Array 1 934441-933269 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE383864.1 Paenibacillus pinihumi DSM 23905 = JCM 16419 strain DSM 23905 H583DRAFT_scaffold00001.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 934440 32 100.0 33 ................................ CAGCACGTCCCGCGCCCGCATCGATTTTTTATA 934375 32 100.0 36 ................................ CGTAATCAGCGATGGTAGACGTCTCCTGCATCTGGC 934307 32 100.0 35 ................................ TTTGTCTCTTGATGTAGACCCCAATAGTGGATGGA 934240 32 100.0 36 ................................ TGTACACCGTGTTGGTGTGCTGCTATTACAGCCTGC 934172 32 100.0 36 ................................ ATCTGCGGTAAGGGAAGTTTGTCGTGCCAACTCCTT 934104 32 100.0 36 ................................ CCCTGCTGCCCTCCTTGCAGAATGGAAGGGTCAACG 934036 32 100.0 34 ................................ ATGTTGCAGACCTCCTATTTAATGTCGCTGTGAC 933970 32 100.0 36 ................................ AACTCGCTGAACGAAGTCTCTCCACCTGCGATAATT 933902 32 100.0 33 ................................ TCCTGTAATTTCTTAACGATGTCTCCTAGTTTG 933837 32 100.0 34 ................................ TTTTCCGACATAGCGAATCATGAAGTACCCGAAC 933771 32 100.0 35 ................................ GGCCGGATTCGCACACAGAGCGTTCGTTCCGTAGT 933704 32 100.0 34 ................................ TACTACGCCGCCCTTTTCGGTCACTTCCGACCAC 933638 32 100.0 35 ................................ AGGGCGTGCTGGCTGGAGCCTTTGCTGTGTTTGGG 933571 32 100.0 36 ................................ TCCAACATGGTCACTGCGTCCTGCAGTTTGTCTGAA 933503 32 100.0 37 ................................ ACCGTCAGACATCAATTCGCACTCCAGAGCTGATACA 933434 32 100.0 35 ................................ CACATCATGGGAATTGCAAACAAGAGTGGATGTCC 933367 32 100.0 36 ................................ ATGTGCTTCCAATTGTTATCACCCACAAATAATTAT 933299 31 84.4 0 ....................A.A-..G...C. | ========== ====== ====== ====== ================================ ===================================== ================== 18 32 99.1 35 GTCGCACTCTACGTGAGTGCGTGGATTGAAAC # Left flank : AAGAAATCGATCTTTAAAGGCAAGCACTTCGTTTCTCCAGAACCCTTTATCTCTCCGCCATTAACCTCACTGGAGTGTTTTGCAGTTCAAATATCGGCAAAATTTTGCCGATATTTTTATGTGAACACCTGATATTTAATTGAAGAAATACCTCTACACCGTTGCTGAATCAAATATATTGAGAATCCATTTTATTGGAAATTCATGATTGTATAAATAAATGATTTCACTTATGATTGTAAGTATATCTATAGCAGAAGAATTTCTTTAATTCTACGTGAATTTAGAAGCATGACTTTAGATATTTTTTAGCTTCTTTGGTGCGAATGTGAAGCTCCCATGATTTTCCCGGGTCCTTCGCACCTCGAAATTTGTCGAAAACACAGTGGATTCACTTGTTTGGCAAAATGTCAAGAAAATATTTATATTTTTCAGCATAGTTTTAGCGAAAATATTAGGGTGTTTACACCTAAAATGGGCGAGAACTGCCTTTTTTCGCT # Right flank : CGTTAGTTAAGAGGAATACGGGGTGAGATTGCTGATAGCGGGCACCCTTGGGGTGGGTACTGAGCTCGCAATTCAAGCAATTATGTAGAACTTTTGCACAAAATGAGCTAGCGAAGAGATGAAGGGATTCTGGAGAAACGGAGTGGTTGCCTTTAAAGACCGATTTCTTACCTTGTATTATTAGATAAGAGAAATCGGTCTTTAACAGCAATCGGAAGAACCCTTCATCTCGGAGCGTTCCCCCAGCCCAACCTAATTAGCGCTATTTTAATAAATCCATCAATCCCCCCTTTTTTTTCCACTCTAAATCTTGAATTGTTAAACAATCTGTGTAGTTCTGCCGATATATAAAGTGAATGTAAAAATAGGCCGATTGAACCATTATGAGTTTGTAAGATTATTGGTGCTATGTAAAGCGTTTTCACGGAGGAGTTGCGGCTAATGGAGAGCCCTAACAAAGCTTTTCTCGGCATGAGCCTTAGAAGAGATTTGTTTAATCA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACGTGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 120674-119913 **** Predicted by CRISPRDetect 2.4 *** >NZ_AULX01000020.1 Paenibacillus pinihumi DSM 23905 = JCM 16419 strain DSM 23905 H583DRAFT_scaffold00011.11_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 120673 32 100.0 35 ................................ GATTCATTGCCGCCAGAGGTGCAGCAACAGATTCT 120606 32 100.0 34 ................................ ATCTATATAGACTTGCAACTGTACATTGTAACTT 120540 32 100.0 33 ................................ ATCAAAATCGTCGCCTTGATGAACAGCGCCGCG 120475 32 100.0 34 ................................ CATAATTATACCGATGGGACACAAGTACAAGTCG 120409 32 100.0 35 ................................ ATGAACTGATGATAAGTTACTCCATTGGAATTCAC 120342 32 100.0 35 ................................ ATTTGGAGGATAGGAAGATTGTAAAGGGCGATATT 120275 32 100.0 34 ................................ CATCCTAGTAGATTTCGCTCGCATGTTTTCAACC 120209 32 100.0 35 ................................ TGGATGGCAAAATTGAATGTTGGAAAGTAGGAAAC 120142 32 100.0 35 ................................ ATCAACATTGATTCAACTCTTGGGCGTAATATCCC 120075 32 100.0 34 ................................ CCGCAGCTCTATGGGCGACTTGCTCGCATTACGC 120009 32 100.0 34 ................................ CCTTGCGGAACACGAACGAATGTTCTATGATGAT 119943 31 84.4 0 .....................AC-...T..T. | ========== ====== ====== ====== ================================ =================================== ================== 12 32 98.7 34 GTCGCACTCTATGTGAGTGCGTGGATTGAAAC # Left flank : TCTTCTACCGTATCACTGAGAAAGCGGGGAGAAGGAGATCTTGGTTCAATCGAAATCCAGCAGTTTGTAGAACTTATTAAGGAAGAGATTCGCTTGAGAACATGAGTGAATTCGTGTAGCGAGTTATTTAACAAGAGGGACTGTCGAGTAAGTCCGCCGTTTTCCATAGAGTAAGACATGTTAGCCTTGGTTCCCATGTCTATATTATTAGCCCGGTGTTAGGGTTGACACCTATGTGTCAGCCCTATAAAGTATAAATTAGTAGAATCACTCTAAATTGGAATATCAAACAAATAGATAGTTGAGATGCAATATTTCTGGTGCGAATGTGAAGCTCCCATAAAATCCCCGGGTCCTTCGCACCTCGAAATTTGTCGAAAATGCATAAAAATCATAGATAAGTAAAAAAGTCAATGATTTTTATTTTCTTGAATGTATTGTTTTTGCAAGATTTTCTTGGAATTACTCCCCTTAAGGGGATAATTCCACTCATTTTCGCT # Right flank : GCCTTTTGCCTTTGACTCTTCCCACACCGTGTTCCAGTGAAGCTGTGCTAACCATAGGAGAAAATCTTCCCGGATGAGCTTCAGCTGCTTCTTCAATGCGCTGCAATTGCCCCCATATAATGAGCAGATAACTGCTCGTCCGGGATGGCTTCAAATTTCATCAAGCACGCGAGCTGCATGGTGCTTGGAGATCAACGATTCCAGATCCAAAATCATATGGATCTGTTTGTTCTCGTAAGACTTGAAAGCCGGATAACATTCAACAAAAACGGGGCATCCAGATGTCAGTTCCCACTGACTCTCCAGATAGCCCCTCTTCTTGATGCTTGGCTGATGCTAGACAAGCGCCTGTCTCAAATATCTGCCGGTATGCGAAGCGCTGACTGCGGCGACTGCTTCCGGTGTCCCGGCGGCTACGAGCTCTCCACCATCATGCCCGCCTTCCGGACCGATATCAATCACCCAGTCACATTCACGAATCACATCCAGATTATGCTCTA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 142762-141860 **** Predicted by CRISPRDetect 2.4 *** >NZ_AULX01000020.1 Paenibacillus pinihumi DSM 23905 = JCM 16419 strain DSM 23905 H583DRAFT_scaffold00011.11_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 142761 32 100.0 35 ................................ TGTGTCCTCTTCGCCTCTATTACGCTGAGAATGTC 142694 32 100.0 36 ................................ TGCTGTAAGGTTCTGTTCCACACCTTCAATGCTCAG 142626 32 100.0 36 ................................ CTTTGATGCCCCATTTGCAGAATGGAAGGGTCAACG 142558 32 96.9 34 ...........C.................... ATTTTTTCGGTGCTTTTGCCATTGAATATTGCCC 142492 32 100.0 36 ................................ GGCTTGCCGAGGTTATTGCTCAAGCTTGGGGAAACA 142424 32 100.0 33 ................................ ACCCATCATGCTCTTCAGCGTATTAAGCGCATA 142359 32 96.9 35 ..........T..................... TGCAATCTCGTCCTCCGTCATGATCAACCTTCCCT 142292 32 100.0 34 ................................ ATTGTGAATCAGACTGATTGGTTTGTTAATGAGT 142226 32 100.0 36 ................................ AGGCATTCCGGTCTTACCTCCAAGCAGCCATATTAA 142158 32 100.0 34 ................................ ACAGTATCGTTATGAATTTCGCAGGATTCGCTAT 142092 32 100.0 35 ................................ AGTATTACCAATAGTTTTTTTAATTAAAGCTATAT 142025 32 100.0 33 ................................ TCGCCAATCCATCCGTAATCATATGTGTGTCTC 141960 32 100.0 37 ................................ TGCCAATCTGGCTAATGTGTTTGTATCGGGGGCACGA 141891 32 93.8 0 ...................T...T........ | ========== ====== ====== ====== ================================ ===================================== ================== 14 32 99.1 35 GTCGCACTCTATGTGAGTGCGTGGATTGAAAC # Left flank : AAAGACCGATTTCTCTGATTAATAGGTTATAGGGTAAGAAACCGGTCGTTAAAGGCAACCACTTCGTTTCTCCAGAACCCTTCATCTCTCTGCCAGCGTGATTCGCTGCATCAAAGACTGTTCAGCTTACAAAACCGTATTGGCTATTTTTTTATTAATGACTAGTAAGGGACTGAAAGAAACTTTACCTGGGATGCATTGGAAAAATCGGAATTCATGCAAAAATGAGATTGTATTATAGACTTTCATCACTTATGATTGGAAGTACATCACCAGATAGAGGGATAGAAAAAACCTGCGGAATTCTTTTGAATTCTCTGGTGCGAATGTGAAGCTCCCATGATTTTCCCGGTTCCTTCGCACCTCGAAATTTGTCGAAATCAATAGAAATTAATACTCTCAGTTAAATGTCAATAGCTGCATCATATTTTTTCTGCATCATTTTTCTTGAGATGAAGCATTTTATCACTTAAAATAGATAATTCTGTCCCATTTTCGCT # Right flank : TGTTTTCATTTCCAGATACTGACCTCACTGGGCAATTGAAAAAACCTTCATCCCTTAGCTCCCCATCCCCCTACTTCCATGAGTTAGAACTTGAAATCTTCTCACACTGCAAGTAGAATAGATTTAATCACTGATAATAATTATCAAGTTAACTCATCAATTCAAATTTAATTCTTGAACGCACTTATTACACTACCTCACCAGGTGGTGTTTTTCATATGGCTGCCAGACCGGCAAATGGAAGGATGACTCACAACATGGAGACAGCAAGGGATGGCGGATTTTTGAAGGGGACGCTATATGATATTGAAGCGGCCTGGGTATCGGACACTGCCCCGGATTGGGGAGAAGAAGGGTTGACGCTCACTTGTCATATGCTGCTGCATGCAGCAAAAGGGGAAGGACAACTGATCATAAACGGCGCTCTATCCCGACTGGAACGGGATACTCTGCATATTTATCCTCCTGGCACGGAGTTGAAGCTGACTTTTGATCATGAT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 34728-35026 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE383865.1 Paenibacillus pinihumi DSM 23905 = JCM 16419 strain DSM 23905 H583DRAFT_scaffold00002.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 34728 32 100.0 36 ................................ TTAAACCGCTGAATGATCGGGCGGCTAAAGGGCAAA 34796 32 100.0 34 ................................ TTCTCCGAGTTTGGTGAACTCTTTGCTTTGCTCT 34862 32 96.9 35 ...........T.................... ATGTTCTTTATGGAGCATGAAAGGCAATTCACAGT 34929 32 96.9 34 ...........T.................... TATTAGTAGTTCTTGAATCTGATTATCAGTGATG 34995 32 90.6 0 ................A...A.A......... | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 96.9 35 GTCGCACTCTACGTGAGTGCGTGGATTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGT # Right flank : CAGCCGCTTGTTTTTCCTTACTCATACTGCTTCCCCGTCGCGGTTCTGCAAACTTCCATCGGATTTTGTATGTTTATTTAAACCGTTCATGCCATCGTAACTATTACATGGGCATAACCTTCCCTTCCACTCTGTTCCATTTGCTTAAATAGCAGCCTGATATTTTTCTTAAATCTCACCCAACCCCCTTTCCTTTATTCCAGATGTCTGATAACCTGATAACATAAGATTTAGCACAGAAAACAGAAGCAGAGGTGTCCATCCATGCGGGTGTCTTTATTTATTACTTGTTTGTCAGATCAGATGTTTCCCGAAGTCGGGGAGAGCATTGTCCGCATTCTCCATGATTACGGATGTGAAGTAGATTTTCCGGAAGGGCAGACCTGCTGCGGGCAGATGGCCTTTAACAGCGGCTACCAGGATGAAGCGCGGGAGGTTGCAAAAACACTCATTCGTGCGTTTGAGCACAGTGAATATGTTGTATCGCCATCCGGTTCCTG # Questionable array : NO Score: 8.83 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACGTGAGTGCGTGGATTGAAAC # Alternate repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.60,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1357-1720 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE383866.1 Paenibacillus pinihumi DSM 23905 = JCM 16419 strain DSM 23905 H583DRAFT_scaffold00004.4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1357 32 93.8 33 CA.............................. TGGCAGAAGGGGTATTTTGGAGCGAACCGAAGA 1422 32 100.0 34 ................................ CCTGTTCGACGGATCGTCTGCCAAATCCTCATAC 1488 32 100.0 35 ................................ ATCATCTGCAAAAGCAATATGAACCTGTTCGAGTC 1555 32 100.0 34 ................................ ATGATGACCTCCCTTTTGTAATTCTCCATTAAAA 1621 32 90.6 37 ....T......T............T....... TAATGTTCCAGTATCGAGCTGCCGCCCAACTTCAGTC 1690 31 84.4 0 ...........T......A.-.T....T.... | ========== ====== ====== ====== ================================ ===================================== ================== 6 32 94.8 35 GTCGCACTCTACGTGAGTGCGTGGATTGAAAC # Left flank : TGCACAATCGCTTCCGTTCGTTCATCTTCTTTCGGTTGTTCTTTCGCTTCATAATAAAACGTACTTCTTGCGATTTGCAGGACGTCACACATTGCTGATACCGAGTATTTATCAAGGTTATTCCGAATGATAGCTACTTTCGTCCCATGATCAGCGCGGCTTGCTTTAAAATATCATTCTCCATCTGCAGACGCTGAACTTGTTTACGTAGGGCGATCAGCTCGTTCTCTTCGGTTGATCGATTGTCCTTTTCCTTGAAGGAGCTCGTTGTCTTCGCTTGCTTGATCCAACGGTCTAGAGCCGAGGCTGTGAGGTCATATTCCTCCACAATCGCTGCCCTAGACTTCCCGTTCTCATAGAGCTGCACCATTTGTTTTTTGAATGCTGTGGTAAAGGTACGTCGTTGTTGTTTTGGCATTGTAGAGATCCGCTCCTTCGCATGATAGGTCTATTCTACAAGCCCTCATTTTTATTGTCCAACTAAGTGTAGCCGATCCATC # Right flank : CACCTCTTGTCTTAACCTTATTTAAATGTAAGTACTAAATGGTACATTACTTCTTATATCAAACAAAACAACTGCTTACTTACCTTACAATGAAAAAAGAAAGCAGGGATTCCAATTAAAAAATTTATTATGTGGATTTCAGCAGTTTTCGTACTATTCATCATTTTCTCATTGTGGGGTTACAGTAAAGTATTAGTCCAAAAAGATGATTTACCTACTCCGGCAAAGTCAGAAACAACAATCACTAAGCCGAACAATAGCTAGAGCAAAAGAAGTGGGCAATCCAGAAATAACATCTGGATTGCCCACTTCTTTTATTCTAAAGTTCTATATAAGTTGAGCAAAAGAAACAAAAGAATGCGGACATAGTGTGAAATGGTTCTGGAGAAGCGAATCGCCCGCCTTTGTTGCCGGATTTCCTCCTTACTGGGCTTCATTCCGGAAACCCAGCAACAACAGCGAACGAAAGAACATTATACACGGCAGCCTTACTCCACAGT # Questionable array : NO Score: 9.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACGTGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.60,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 32048-32275 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE383866.1 Paenibacillus pinihumi DSM 23905 = JCM 16419 strain DSM 23905 H583DRAFT_scaffold00004.4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 32048 32 100.0 34 ................................ AAAAAGACTTCGGTCATTGTCGATGGTCATTATG 32114 32 100.0 33 ................................ GGGAAGGCGTATTTCCCCCACTACTTTAACCGG 32179 32 96.9 34 ............G................... ACCATCAATAGCAAGTCACCGTCATCTAACTCGC 32245 31 81.2 0 .............C........-....TT.CG | ========== ====== ====== ====== ================================ ================================== ================== 4 32 94.5 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAC # Left flank : ATTCGACATCAAGTTACATATTCCTACCAATAAAATATAATATATGTAAATTTTTTGTCGTTTGGATAGCGTTCTATATGAGATCATAGTTCATATCTGTTTACGGGTATTAAAAGTAAGTGAGCATTTACTTATGGAAAAAGATTTTCGAAGGAGCGTAAGAAAGAGAAACGATGTACTATTTTATAGGACTGAGACAGTATGTTATTTTAAAATAAACCAAAAAAATGAATAAACAGCAGTTGACACCACTTTGCTTAGACATATAAAGTAAAGATTAGAATAGAATAAAAAAGTTAAGCATACGTATGCTTGAATTGGTGCGAATGTGAAGCTCCCATGATTTTCCCGGTTCCTTCGCACCTCGAAACTTGTCGAAAACAACGAAAAATCATAAATTATAAGAAAAGTCAATGTTTTTAGGGTTGTTAAAAGCAATGTTTTTAGAAGGGATTTCTGGAATTCTTCCTTTTAAAGGGTTAATTCTGCTCATTTTCGCT # Right flank : GGGAATCTACTCTATTCATTTCAATTCAAAATCCCATTTAGCGATTAGTCCAATTTCCTGAAAGGAGTGATGTATTTTGCATACAACAATTAAAATGAAATTTCACATCAGACTATCGGAGAGGTCATTGAAGAACTAAACAGGGGATTCGGCTTACTGGCGGATTCCCTGAAATTTGAGGAGGAATCCTAATTTGATCACATTAAGAGAAATTAACAAACATAACTGGGAGACATGTATTCAGCTTCAGGTAGAGCCTGGGCAGGAAGCCTACATTGCTTCTAATCTATATTCAATTGCGCAAGCGCAATTTCTGGACGGGTTTGTGACGAAGGGAATCTACAAAGAGGATCAAATGATCGGCTTTGCAATGTATGGTCTCGATGCCGATGATGGGAATTACTGGGTTTATAGATTTATGATTGATCGGCGTTTCCAAAAACAAGGCTTCGGCCAGTTAGCTATGCAACAGGTTATTGAAGATATCCGCAGCAAAGCAG # Questionable array : NO Score: 8.58 # Score Detail : 1:0, 2:3, 3:3, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //