Array 1 307451-309459 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWWU01000028.1 Cronobacter sakazakii strain CE52 scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 307451 28 100.0 32 ............................ AGGAAACGGCGGTTCTGCCGTTTCAATGTGGC 307511 28 100.0 33 ............................ CCGCAAAACTGGAGTGGGCCGCACAGGAGGGGT 307572 28 100.0 32 ............................ TGCCTGACCTGATGAAGGTGCGCGGCTCAATG 307632 28 100.0 32 ............................ GTCTCCGCCAGCGCGCCCCAGCCCTGCGCCGC 307692 28 96.4 32 .....................C...... CACTGATAGAGGCGCAGCTCGCGCATAACCTC 307752 28 100.0 32 ............................ TCTCCAGTGCCATCCTCAGCCCCGGCGCTATC 307812 28 100.0 32 ............................ AAAAACGTTTTGCCAGACCTGGCGGATGAGGC 307872 28 100.0 32 ............................ AAAACAATATGGCGAGCACGGCGGTTGCGGGA 307932 28 100.0 32 ............................ GTTGCCCGCTGGTCAAGAATTTTCAACGACAC 307992 28 100.0 32 ............................ ACCTGTTGCGCGTTCTGCGCGCGGGCCTGCGC 308052 28 100.0 32 ............................ CCGCCGTCGCGCTGTTCTGCGCGGATTTCTCC 308112 28 100.0 32 ............................ TCCGTCCGATCGTTTAACGACTGGAAGGAAAG 308172 28 100.0 32 ............................ AGAGAAAGGTGCGAACGGCGTACCGGACAGGC 308232 28 100.0 32 ............................ CAGCGCTTCGGCGATAATCTTCTCGCCGCGCG 308292 28 100.0 32 ............................ ACCAGCTATCGACCGCGCCCACATCTGCGTCG 308352 28 100.0 32 ............................ GTTACGCCAAAATCAACGGGCGATAACTGCAG 308412 28 100.0 32 ............................ TTTGCCGGGATCGTCGCTCATCAGCATCATCA 308472 28 100.0 32 ............................ AGCTCCTGCTCACACGCCGACAGGTCGTCGTA 308532 28 100.0 32 ............................ ACACTATAGTCACCTAAATTCAGAGACGGTTT 308592 28 100.0 32 ............................ TATGGCTGCGACCGATATTGCAAAAATCGTTG 308652 28 100.0 32 ............................ CGTGCAGAACTGACCTCAACGCGCGCCGCGAC 308712 28 100.0 32 ............................ TGGCTGAATGCGTAGCTGAACGTTGTTCTCTC 308772 28 100.0 32 ............................ ACGTCAGCAACGGTAATTTCGCTATTTTTAAT 308832 28 100.0 32 ............................ TCACCCACACTCCACGGCCCCAGGTGTAGCGA 308892 28 100.0 32 ............................ GTCGGCCCGCTGTAAATCAGGGTCCAGACGCC 308952 28 100.0 32 ............................ AGTTCGCGCACGAAGTCGGCTGTATAAAGCAC 309012 28 100.0 32 ............................ ATCTGTATCAGCCCAGGAACCGTAGTCGTCGT 309072 28 96.4 32 A........................... GGTGCGCTTAGTGCCCTGGACGGCCTCGATAT 309132 28 96.4 32 A........................... AGGATCACTCGATAAACGGCGGCGCAGACGTG 309192 28 96.4 32 A........................... TCCGATGCGGCTAAACAGGCGTATCAGGACAT 309252 28 96.4 32 A........................... AACAGCTCGGCGTCCTGGTAAATTCGTTCCCC 309312 28 100.0 32 ............................ AAACCTCGACCGCGATACTGGCAAGCTCGACA 309372 28 100.0 32 ............................ TGTAGGGGCGTACCCCTCCCGGCCAAAAAAAA 309432 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 34 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACTGCCTGTTTCAGGCGATGTTGTACGAACATCATCGACCAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCGAGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGCCTGGACGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCGTTAAAAGCAAAAATTTGTTTTCAATTCAGGCATTCCGGTAATATTCGCTCCT # Right flank : AACTCCCAGCTACCCGCCGGGGTTGGATACGCCGTCCACTGCACACCCGCAGTAAAAAATTTTAAGCCCGAAATAATGCTTTTATTATCGTTATATAAATAACGCCGCAATATCACGGTAAAATTATCCATAAAATTTATGGTTTCTGCTGTACGAGCTTTGCTGGAAAATTCGCGCCAGATATTAATGCGGTGCTAATTAGCCCATATAACGGCGATGACACGTAAGAACCACATTAACTACAGACATTTGCAGGTTTATTGCCTGTCACAGGGTGTCGTTAGAGTAATCAGTAATTATGTTTGATTGCAGATAATAGCGAAGGCCCTATAAAAGTTGACATTTAGTGTCATTCATTAATAAAGCGCGGGAAATGAAAGGGATGTCACGGCATATTTAAAGGCTTAATAATAGACTCATCTCTTATTTATTTTTCAAAGAAATATAAATACAGGAATCATCTAACGGAATGATGTAATGGATCGGAATGCCGTAACGCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 318169-320177 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWWU01000028.1 Cronobacter sakazakii strain CE52 scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 318169 28 100.0 33 ............................ AGAAACTCGGGGTTGCGCTCTCGGTGAATAACC 318230 28 100.0 32 ............................ TTCCGTGGCGAGGCTTGTTACACCCGGAAACC 318290 28 100.0 32 ............................ TGATGCAGCGCCGTCAGAGCGAGGCGGAACGC 318350 28 100.0 32 ............................ ATGGCTACGACCTGCGCCAGCGCGGACAGTAC 318410 28 100.0 32 ............................ GGAACGGCACTACCCGAGCAAAATGGCGGGAT 318470 28 100.0 32 ............................ GCGTGCTCATCAGACCAGAGCAGGCCACATAT 318530 28 100.0 32 ............................ GTAAGCCGCACCAGCACGGCCTTTTTATCGGA 318590 28 100.0 32 ............................ TGCCCATCCGGCACACCTTCGGCGAAGAAATT 318650 28 100.0 32 ............................ ATATCGTCAAGCCGGTTAATGAGGCGCTTGCC 318710 28 100.0 32 ............................ CTCTGCACCAGTGATGGAATTACCCATGGCAC 318770 28 100.0 32 ............................ TCGATCGCGTAATCGCGCGCGCGGTTGAGTGT 318830 28 100.0 32 ............................ CTCTGCACCAGTGATGGAATTACCCATGGCAC 318890 28 100.0 32 ............................ TCGATCGCGTAATCGCGCGCGCGGTTGAGTGT 318950 28 100.0 32 ............................ GCGGATCACTTCGGTGGTTGGCGCGACGGCGA 319010 28 100.0 32 ............................ GCGTGGGGCTGGCGTTAAGGGGCAATGGCGCG 319070 28 100.0 32 ............................ TGGGTGTGTTTTGACAGGGACGCATTCGAACT 319130 28 100.0 32 ............................ ATCGCGTGTTGATGCTGGCCGCAGCATCTGCA 319190 28 100.0 32 ............................ AGGGCGCTCAGATTGCCGTCATATTCGTTCTT 319250 28 100.0 32 ............................ TGCACGCCGGCGTTTTGTTTAAACGTCGCGTT 319310 28 100.0 32 ............................ GGCATTACGCCGGGTGAGGTTAAGTTCCGCTA 319370 28 100.0 32 ............................ TTTGCTCTATCCTCGTCAGATAAGGAATAAGC 319430 28 100.0 32 ............................ ACGTCGTCAGTTTCAAGCTCACTGCGAAGGAA 319490 28 100.0 32 ............................ CGCTACCGTGTGCTTCATTCACCGCGCGAAGT 319550 28 100.0 32 ............................ TTGTTGTGCAGGCCCGCGAACGCCTCTGTGTT 319610 28 100.0 32 ............................ GCGAACAGCAAACGGCCCGGAAACACCTCATT 319670 28 96.4 32 .......A.................... GTTTTAATGCCGAAGAAGGCACGGCTGACCTT 319730 28 100.0 32 ............................ TCTGGCGTTCGGTTTGCGGCGGTATCGTCCCA 319790 28 100.0 32 ............................ GTTGTGGTGAATGCGCAGGCTGATGCGCTGAT 319850 28 100.0 32 ............................ TCAGAATGGCCCAGCGATGACGGCTACCGAAG 319910 28 100.0 32 ............................ GTACGACCCGCAGATTGCTGAGTACGAGCAAA 319970 28 100.0 32 ............................ AGCGCTGCTATCAGCTCAAGAACGGCAGCGGG 320030 28 100.0 32 ............................ AATGGGGTCATTATCGGTTCCTCCGTGATGCC 320090 28 96.4 31 ......................A..... TCGAACACAGCGACGCCGTTCCCGTCGCCGC 320149 27 92.9 0 ........................-..T | T,G [320169,320172] ========== ====== ====== ====== ============================ ================================= ================== 34 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGGCGCTGGCGGAATTAGAGGCTACGCGCTGGCGGGCGGGTTTGCAGGATTACTGCCAGAGCAGCGCGATATTACCCGTGCCACTGGTTCAGGGCTGGCGCACCGTGACGCGCGTGCAGGTGAAAAGCAACCCCGAACGCCTGCTGCGCCGCTCAGTGCGTAAAGGCTGGCTGACTGAAGAAGAGGCACAGCAGCGGCTTTCTGGTTTACAGGAGCAACAAACCGCTCTGCCCTGGATTCAGGTTAAAAGCCTCTCCAGCGGCCAGCAATACCGGCTGTTTATCCAGCACGGCGCACTTCAGCCCACGCCCGTCAGCGGCACCTTCAGCAGTTACGGGTTAAGCGCCAGCGCCACCATCCCCTGGTTCTGACCCTTTTTAAATACGTCTCGCTAACCTGTTGATTTTTATAATGGGTTAGTGAGGCGTTGAAAAAAGGGTTTTAAGAAGTAAGCAGCGTTTATATTTTTATAAACAATGGGTTAAGAATTTTTGTCTTCA # Right flank : TCACAGCGAATTCCCTCGCCGTCACACTTGACCTTCCTGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCCATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCCGGCAAAACCGCGTTTGCCGGTAAAAATGTCACGACCTGGGGATATAACGGCTCGCTGCTGGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTCAATATCAATATCCGCAATAACCTCGCCGAAGAGACCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGGCCGCAGGGAATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGCGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 180430-183693 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWWU01000030.1 Cronobacter sakazakii strain CE52 scaffold6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 180430 29 100.0 32 ............................. CAATCGAGGAATTAGTGACTAAACAGGCAGCC 180491 29 100.0 32 ............................. ACATCTTCATCCTAGCCGGTAACTATCTGCAA 180552 29 100.0 32 ............................. CCAACTCAAACGCCGAGCCGATTCACGTATCT 180613 29 100.0 32 ............................. CCATTAACATCTATCAGCGCAAACATACCGGA 180674 29 100.0 32 ............................. CCTGCCGTTGCGCGCGGGTGGCGGCGCGATAC 180735 29 100.0 32 ............................. TCGGTTTTTATGCCGTAATAGCGCCACTCTAT 180796 29 100.0 32 ............................. CGCGTAGACGGTGCGGGGAGGTGTTCAGTTAC 180857 29 100.0 32 ............................. CATCTACCACCCGGCGCGGTGGTCGTGATTGT 180918 29 100.0 32 ............................. GAGTCGGTTCCGCGCTTCAACGCAAGGAAAAA 180979 29 100.0 32 ............................. AGCTTTACCGCGCTCAAGGATTTCCCGAATGG 181040 29 100.0 32 ............................. AATCTCGCGTCTGCATTGTCGCGCCAGTTATC 181101 29 100.0 32 ............................. GACTTTGCCACGATACCGAATGCGATCATGTC 181162 29 100.0 32 ............................. TATGACATACTATGAGAGCGCAGCGGGCGAGG 181223 29 100.0 32 ............................. AATCGACACCTTCTTACCGTCCACCAGCGTAT 181284 29 100.0 32 ............................. CCTGGAGTCGGGCGAAGTCGCGTTATATACCG 181345 29 96.6 32 .................T........... CTGCGTTCGTCGTCGAGCTGCAGCACGTTGTT 181406 29 100.0 32 ............................. GTTCGCGCAACTCAGCGAGCGGCGGCAGCCGA 181467 29 100.0 32 ............................. GCAGGCTCAGTGGTCAGAAGCTGAATGGTCGA 181528 29 100.0 32 ............................. CAGCCAGCGCCGGAAATAAACGTTCATATCGA 181589 29 100.0 32 ............................. AAACTGACTCTACAACACCTGGATACCTGGGT 181650 29 100.0 32 ............................. GACGCTTTGACGGAATGACGGACATGTATGAA 181711 29 100.0 32 ............................. TGCTGCAAAAAGAATTACTTGGCACCGATGAT 181772 29 96.6 32 ......................G...... ATCCGCGGGGAGGAAACACTGACGGTACATAC 181833 29 100.0 32 ............................. GCCATGAGAGAGACGGCATAGACCTGAATCAG 181894 29 100.0 32 ............................. GCTGACGTTCTGCAGCCATGCGCCTACGTGAT 181955 29 100.0 32 ............................. TCTAAAGGCGCAATCTTCTTCTAAGGAGTTCA 182016 29 100.0 32 ............................. ATCCAGCGTGAGTAATATATAGCTATGTTATT 182077 29 96.6 32 ............................T GAAACGGCGGTTACCCTGCCGGGAACGTGGCG 182138 29 100.0 32 ............................. CAGTCTCTGGCAACCTCCCAGCATTCGCTACT 182199 29 100.0 32 ............................. CGGTCCATTTTCTTACCAAAGCCGTATGTTTT 182260 29 100.0 32 ............................. GCGGCGGCTGGTGGACTTTGTTCGATAGGTGC 182321 29 100.0 32 ............................. CTGGTCAGCGTAAACGCCGCAAATACGACAAA 182382 29 100.0 32 ............................. GCAACTTTTAGCGCCGCATTCTCCGCCGCTAG 182443 29 100.0 32 ............................. TAGGGAATCAGCGCCAGCATTTTGCGCTTGTC 182504 29 100.0 32 ............................. AAGTGATAACAGTGCTATTGCCGTTTTTTGAA 182565 29 100.0 32 ............................. GCTAGTCAGGTCGTTGCCAGCTTCATGCCCTC 182626 29 100.0 32 ............................. AGCGAGACGGTCGCAGCGTGTAATCTACAGTC 182687 29 100.0 32 ............................. ACAACTGGCAACTGGTGGATATCGAGACCACT 182748 29 100.0 32 ............................. TGCGTGCCACGGGTAAGGAATACGCCAGCTTT 182809 29 100.0 32 ............................. GCAGATCCAGGTAACGTTGCGCTGGCGCTGGT 182870 29 100.0 32 ............................. AATGCGATCATCGATATCGGGCAGGCTGTCAT 182931 29 100.0 32 ............................. GTGTGAGACTTTTGCGCCGCCTAACTTGATCG 182992 29 100.0 32 ............................. CAGGAGATCGCCAAATCAACGCCCAGCCAGAC 183053 29 100.0 32 ............................. CCGCGGCGGTATTCCCTGCAGGCCTGGTTATT 183114 29 100.0 32 ............................. GCCATCGGACGCTTCTGCCAATCTTAACAGGA 183175 29 100.0 32 ............................. GCGCGACGTATCGCACCGTTGCGCAGGATACC 183236 29 100.0 32 ............................. GTTATCATCTGAATGCCTAAAATTGAGGAATT 183297 29 96.6 32 .C........................... GCGGTTGCACTCCACCGCGAAACCCTCGAACC 183358 29 100.0 32 ............................. TTTTCGAAATTGAGCATATTTAACCTATGATT 183419 29 93.1 32 ........T..A................. ATTTTCGAGCAAAGAGGCAACAGGTCTTCATC 183480 29 96.6 32 ...........A................. ATCGCCAGTATTTTCAACGTGCCGGCGCACAT 183541 29 96.6 33 .C........................... AACGCTCGCAGCAGGTACGCTGCAGCAACCAGC 183603 29 93.1 33 .C..........T................ AACGCTCGCAGCAGGTACGCTGCAGCAACCAGC 183665 29 96.6 0 .C........................... | ========== ====== ====== ====== ============================= ================================= ================== 54 29 99.3 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATCGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTGACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACTTTCGTGTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAACTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAATAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAAAGGGTTACTTTTAGT # Right flank : GAACGCTGACCTGGCGAACACGCTGCAAAATCTCCGTGCCCCGCCAGCCGTAATAAACCGCCCAAGCTCTTCGCGCCTGTCAATCACCGCCCCCTTTCCCGCCACAATCTTCAGCAACGTTTATACTTCAAAGCCCTTATTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 209981-211108 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWWU01000030.1 Cronobacter sakazakii strain CE52 scaffold6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 209981 29 93.1 32 .T..........C................ CGAGAGGTAGTAAGCAGCTTCTGTAAGCTCAT 210042 29 93.1 32 .T..........C................ CCCGCACCAGTTCTTACAACCGAGGGACGCCT 210103 29 93.1 32 .T..........C................ GAAACAGCCAATCAATGATGCCTACATCCGGT 210164 29 93.1 32 .T..........C................ CCCCCTCTGGTTTTGAGGAAGAAAATGATGGC 210225 29 93.1 32 .T..........C................ ACCTTCGACACCGGGTTTCAGACTGACCAGCC 210286 29 100.0 32 ............................. ATATCGTCCGCGTTATCGCCGTTTTCTTCGCA 210347 29 100.0 33 ............................. ATATTGACCGCCACGTATGACGCCGAGGCAGAC 210409 29 100.0 32 ............................. CTCGTCATACAGGGCATTTGCAAGACGGGTAT 210470 29 100.0 32 ............................. CATCTTGTTAAAGTCGTCGTGATCGGGCCAGC 210531 29 100.0 32 ............................. AGATCCTGAATGAGACCGAGCAGAACACCATC 210592 29 100.0 32 ............................. ATTTCATTGGTAACTGAGTTGACTGACGAGGA 210653 29 100.0 32 ............................. TGGGAACGCATTCTGAAGGAAGACCCGGCATC 210714 29 100.0 32 ............................. GGCCACATCATCAAACTGGATACCGTGTTTAC 210775 29 100.0 32 ............................. GCCGCATTGCAGGAACCACTTATTTTAAACTG 210836 29 100.0 32 ............................. CGCTGCAATGCATTCTCAGAGCTGATTTTATT 210897 29 100.0 32 ............................. CGTCGTCACTCGTTGGTAGTGCCAGCGCCGCA 210958 29 100.0 32 ............................. CTCAGCGATACGCGCGTCTTTCTCCCTGCAAT 211019 29 93.1 32 ............C.....C.......... GCACCAGCATTAACGCCGAATACATAATTATG 211080 29 96.6 0 .T........................... | ========== ====== ====== ====== ============================= ================================= ================== 19 29 97.6 32 GAGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : ACCGTGCTGGCCGCCGGTGAAATCGAACCACCGCAGCCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAGCGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGTGACGTATCGCGTCGGGTGCGTGAAATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAGTGTGGTGATGGCCTGGGCCACCAATAATGAATCCGGTTTCGATTTTCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : GTTATTGAGTAGAATCGTCTGCCTTGGTGGCTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGATCCACAAAAACTTCCCGCACCTGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCGGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGACCCCCACCCTTTCTGGGTAAGTACTTGATAGATAACGTCTAAAGTACTCAAATCTCTCCCCCTAAGCCTTAGTGATACAAAAATTGTGTACCACCAGTAGGCTGCACTATGTCTCTTATGCTCTCCCGTCATGGGATCTGGTACTACCGGAAAGTTAATATCTTACCCTGTGGTAAACGCCATGAGTT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //