Array 1 143310-143740 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSQL01000009.1 Parabacteroides sp. 20_3 strain TF12-11 TF12-11.Scaf9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 143310 36 94.4 30 .......T.G.......................... CATGGACGTGTTCCCGTTCAACGCGGATGT 143376 36 100.0 30 .................................... TAAACTTGATAGCCCGGTCAATATGTACGT 143442 36 100.0 30 .................................... CATAATCATAAGGAAGTAGATGAATGTATT 143508 36 100.0 28 .................................... CGTATGCGTACTGTCTCCTTCCACGAGA 143572 36 100.0 30 .................................... TTAGGATATCAGCTAGATTTCATCGAAAAT 143638 36 100.0 30 .................................... TGCACCAAAAGCCGGTAAGGTGCGATAGTA 143704 35 80.6 0 ................-...C.........A.TGTT | A,A [143729,143732] ========== ====== ====== ====== ==================================== ============================== ================== 7 36 96.4 30 GTTGTTTCTACCTTTCAAACTAAAGGCTAATACAAC # Left flank : CAAGCGTAGTAGCATCTTCAATAGCAATATCTTCAATAGATTCTTTTAGTATTGAAAATCTCCAAACAGGAACAGATGCATAATTTTCTCTTCGATAGAATAAGAACTCAGTATCAGTATTTCTAAAAGCTAAAGGTTCAACCTCTTTATCCTCTGATGGATGTCCACCTACATATTTTCCACAAGCATGGAAATCCTCTATTTTTAACCCTCTTTTTGCTAATTTGCCAACGGTTTCCTCTCTTTGACTTTCAGCGAGTTTTATCGAAATATAGAAAACAGGAATACCCACAATTACAGAAATAATCAGAGGTGTATAATCTGTATTCCCATATTCATCTGTTGTACAGGAATATAAAAAAAACAAAATTCCAAATAGTAGTATTTTCTTCATATCGTGTGAATTTAAATGTTAACAATGCTGCAAGTAAGTAAAGTTTATTTGAAATACAAAGGTTTTTCTTGATTATTTAAGTTGATAAGAGTATATATCTTAAAAT # Right flank : TTTTATGCTGATGAGTCATTCGAAAGGTCTTCTAATTTTATATTTTCTATCTTCATTTTAAATTCTGCTATAATCTTTTTTGCATAGACGAAATCGTCAGAAATCTCTTTGATACATTCAGCTTCGTATTTATCATGTAAGAACATATTCCGAGTTTTAATGAGAAAAGAACTATCTATCTTTTGTTTAGTTCGTTTCTCATATTCTGTAATTAGCTCATTAAAATCATAATAATTTCCGGGAGTAGCCTTCTTTAAATCTGGGAACATCGATACCATCGTGATTTCGAAAGAATGAATGATAGGTATGATTTGTATCTGGGCTTCTTCGAAATCTAGGCATTCTCTTTTATAATTTTCATAAGGTTGAATCTTTACGCTAGAAGATATACTATTGTTTCTTTTGACTTTACTTAATACTTTATTCAAAGAGTTGATTCTTGTATCATGATGTATATAAAATAACTTTCCGTAGTCTTTTATCTTGATATCTTCTCCTTG # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTTCTACCTTTCAAACTAAAGGCTAATACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 16034-15756 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSQL01000018.1 Parabacteroides sp. 20_3 strain TF12-11 TF12-11.Scaf18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 16033 47 68.1 29 AAG..T.AG.AT...T...A...........C....CAA.......T CTTGGGGCGAATGGTGACGGTTGGCTTGC A [16018] 15956 47 95.7 30 ...........T...T............................... CACACGCTGGCCGTTCACATAACCCGTGTC 15879 47 97.9 30 ......G........................................ ATAATGGTAAAAAGGTATTGGATAAAATAC 15802 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 4 47 90.4 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGATCCATTGGAAACAGC # Left flank : ACCCGTGGGGGATTCGTCTGGGGCTGTCGTACAAGCAGGTTCAAGAGAATGCGTCGTTTACCGGAGTGCTCACAGCTAAGCACTTCATTTATCAGCTCATCCTGTTTATCATATAGCCATTCGTTTTCCTTGGTCGAGAAATGGCTACAGACCCATAACGCTTGATAACTAACGGCATCATCCGGATCGAATATCAGATCGTATAGCTCTGCTTTCCGTTCTTGGTTCCCTTGTACATAAAATAATATCTCATGGATATCCTCTATATGACAGCGGCTTGATAGTCTCTCTTTTAGGTCCATTCTCAATCTTTGTTGTTGTCTCTTTATCTTTTCTGCCGTAAAGTTATAGTCTTTTTAGCAAAGTTTCCCTAGTTCACTTACTTTTGTGCCCCATTGATAAAAGAATGGATAGATATGCGATATATGAATTTATTAAATGATTTAACAATTGATTGTAAAAATAACGGAGGGTGTTACCGAGTAAAGGATCAGTTGAAG # Right flank : TTAATCTGTATTATATGCTGTATATCAACTAGATGATAGAATGGTTAGAAAATAAAAAAGAAAAGTTTCCAATGTAATAAATCCCGTTTTATGACGGGATTTATTATTTCTAGAAAAGCTCTAATTGTTGGCCGGGTGTATTAGGAGGTTGTACTTTTTTCCCATAGAACAACTCAATATTCCCAAATTGTTTGTCTGTAATGCACATTATTCCTATTTGCCCGTGTTCTGGTAAAAATGATTTTACTCGTTTTATGTGTACTTCTGCATTTTCTTGGCTGGCGCAATGTCGCACATAAATAGAGAACTGAAACATGGTAAAGCCATCACGCTGCAGATTCTTACGGAAATCACTATAAGCTTTCTTTTCTTTTTTTGTTTCCGTAGGTAAGTCAAATAATACCAACACCCACATAATACGATATTCGCTAAATCGATCCATGATTATTACCGTTCTGGATACACGATTCTTCGTTGCTCTCCACTGAAACATTTGTAAA # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGATCCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.58%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-2.90,-3.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //