Array 1 47404-46635 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045705.1 Streptomyces rutgersensis strain NBH77 plasmid unnamed1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 47403 37 100.0 35 ..................................... ATGACGGCGGCCAAGCTCAAGCAGCTCGGCCTCGT 47331 37 100.0 37 ..................................... CAGTCCACGGAGTCCTCCTACGGGTGCGTGGATCAGG 47257 37 100.0 35 ..................................... ACAGCCCGCCCCCGCGCTCTCCGGCGCGGGGGCGG 47185 37 100.0 36 ..................................... TCGCTGTCCTGGAGGAGGTGGCGCCGGGGTATGCCG 47112 37 100.0 38 ..................................... ATCAGGACGATGGACCCGCCGGCCGCGACGACGGACAG 47037 37 100.0 36 ..................................... ACGGGGGCCGGCGGCTTCGGGCGCCAGGTGGCGACG 46964 37 100.0 38 ..................................... ACCGTGACTCCCCTGGTGGCCGCCTCGACCCCCGAGGG 46889 37 100.0 36 ..................................... GGTGACGGCGCGGGGGGCATGGAGCGGGTCACGGTG 46816 37 97.3 37 ......................T.............. CCCGAAGGGGAGGACCAGGGTCGATAGCTCCACCAAA 46742 37 97.3 34 ............G........................ GACGCCGCTCTGGGCATCCGCACCCGCCTGCGCG 46671 37 94.6 0 .....................A.............C. | ========== ====== ====== ====== ===================================== ====================================== ================== 11 37 99.0 36 GTGGCGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC # Left flank : CGCCGCCCGAGCCGCCAGCACCGTCCCCGCCTCCTTGTGCGGCACCCCCACCCGGCCACCCGACCCCTCAACCACCCCCAACCGCTCCTGCCAGGCACAGCACCCCTTCCCCACGTCATGCACCAACCCCAGAAACTCCGCCGCCTCCCCAGCCCCGAACACCTCACCGAACCCCCGCGCCAGAGCAGCCGAACCCCGCAGGTGATCCACCAGCAGATGCCGAACACCCCACGGATTCCGGCTGTGCGCGAACAACTCACGACCCGACATCCCAGCTCCCCCAACCGATCGACCACCCACCGAAGGCAGCCACCGTAAAGTGGACCACCGACACCACAGCCCAGACCACCCCGAAGCGACCAGCCAGGCCGCTTCGGAACCTGAAGCACACACACGACACGCCAATCACACCCAAGGAAAATGTCAAATTTGCTCGCAATTGAGCCTCGCTTAACTCGTGGTCGAGAGCACTCAGACAGATAAACCCCTGGTCAACCAGG # Right flank : TCAGACTCTCGCGGAGCGCCCCTGAGAGGTCCGCCGCCTGATCAGCGGGTGTTGAGGACCTGCGCCTCGCGCAGGTCAGCCACCAGTTCGGTGGTGCGGGTTTCGGTGAGGGCGCCGCCATCACCGCCGGCCGCCGTCCAGTCGATGTTCCAGTGGGCGGTCACGTACACCTTGTGTTCGCCGGGCCGTTCGTACCGGTGCCCGCAGTCCGAGGAGGGCACCGTGCCCTGGTCGGCGGTGTACTGGGTTCCTGGCCTGTGGCAGGTCGCCTTGGTGCCTTCGCCCATGTTCCAGACGAGCCGGTCCACCAGGTCCGTGGCGGTCACCGGCACCGACCCGGCCGACGCCAAGGCCGTCACCGGCCGCCGCCAAGTTCGGCGCCAGGGGGCCGGCCACCGCCAGGAGCACGCCGCCGAGGACGGCCCGCCCGCACGCCTCAGCACGTCTGCTCCCCGTGCGGGGTGTACGTGATGCCACCGGCCGTCCTCCCACTACACCGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-18.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 55776-57286 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045705.1 Streptomyces rutgersensis strain NBH77 plasmid unnamed1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 55776 37 100.0 36 ..................................... GCCTCGTGGGCGCTCTCGTCGCCGGCCAACTGGGAG 55849 37 100.0 36 ..................................... GCGAGCTGGCCCGGCGCACCGGCTGGTCGGTCGCGT 55922 37 100.0 36 ..................................... AGTTTCCGCTTGCATTGTTGCTTGCGGTAATTTGAG 55995 37 100.0 37 ..................................... TCCTGTGCCTCGAGGCCGTATCCGTCGAGCTGGCCGG 56069 37 100.0 36 ..................................... CCCTGCGGCGGCACCGGCCGGGTCATCGGCGACGCC 56142 37 100.0 36 ..................................... CAGGTCCTCGACCGGCTTTGGGCGATCGAGCACGAC 56215 37 100.0 36 ..................................... TCAATTTGACGGGCCTCCGAGACCTCGAGGCGGGGG 56288 37 100.0 37 ..................................... CTCACCACCTGGGCGGTCCCCGGGATGTCCGTTTCGC 56362 37 100.0 38 ..................................... CTCTGGGTGATCGGCAAGACCGGCCGTCGTCTCCTGGC 56437 37 100.0 37 ..................................... GTCAGCCCGGGGGTGTCGGGACCTCTCTCCGGCTCTG 56511 37 100.0 37 ..................................... CTGCGCGTGGACCGGTGGGACCGCCTCGCCCCGCCCC 56585 37 100.0 36 ..................................... CGTGCTTGCCTCTGGCGTCGTCTGGCCGGAGGGAAC 56658 37 100.0 38 ..................................... CGCCGGGCGGGCACCGGCCGCGCCGACGCGGCGACGTA 56733 37 100.0 37 ..................................... ATGATGACCAACGGCCGGCCCTCCTCGACGGCCGCCG 56807 37 100.0 37 ..................................... TCCAGCGCATCCCTGACCCTCGACCGGCCGGTGCCCT 56881 37 100.0 35 ..................................... TTGAAGGCGACCACGGCGTAGATGTCGACGGAGAG 56953 37 100.0 37 ..................................... GCCGCCCTCTACGTCGGCCACTCCGTGGGCGACCACT 57027 37 100.0 37 ..................................... CCTCCCGCCAGGCCCAACGGGTCCCAGAGCCACACGG 57101 37 100.0 36 ..................................... CCCTCGGCCGGGGCCAGGCGGTGCGCCGCCCAGCCC 57174 37 100.0 39 ..................................... ACGGTGTACCCCTCGCGCTCCATCTCGAAGGGCAGCAGC 57250 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 21 37 100.0 37 GTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC # Left flank : CACGCATCCTGGCCCGACACCTCCGAGGAGACCTCCCCGGCTACCTGCCCTGGATCGCAGCCTGATGGAACTCCTCCTCACCTACGACGTCGATACCACCACGCCCGAAGGCCGCCGCAGGCTCCGCCGTGTCGCCAAGCTCTGCGAGGGACACGGCATCCGCGTGCAAAAATCCGTCTTCGAGATCATCACGGACGACCAAACCATGCTGCAGCTCACATACGACATCGAAGACCTAATCAATACCGAAACCGACAGTGTACGGATCTACCGACTGCCCCACTCAGGCACAGAAACCGTCCAAACGCTCGGAGCGGCAGCACTTCACCCACATCACAGCGACCTGATCCTGTAGACAACGGCACGCCCGCTTCGGAACCTCAAGCACACACGCGACACGCCCATCGCACCTAAGGAGAATGTCGGATATCTGCGTGAATGGGCATCCTTCAATTGGCTTTCGTGAGCACTCAGACAACCAAACCCCCTGGCCAACCAGG # Right flank : CGTGATCTGGGTCCGGCGGCACAGTGACGCGAGCTGGCAGAAGGGCGCTCGGGCGGGATGCCAGCGCCGCCCGCGTCCGCGGGGGCGATGGAGCTTCCCGCTGACGGCCCACCACAGCCCTCCCGGCGCGAGTGAAGTGCGTCACTCGCGCGGCGGGAAACGCCAGGTAAGGACGCTGCGCGTGATGAGTTGATCACCAAGAGGTACGAAAGTTCGTTCAGCGCTTAACTCTCGGGGGGCCTCAAAGCGGTGTACGGGTGTAACTCGCCCCGCGCCAGGTGCGCAGGGCGCCCCGCTACAGAGGAGAACACCGTGTCCTCGAGGCCACCCAAGGCCCGGTACGCGCCGCAGCCCGGCGCCTATCGGATGTCCATAGCCTCGCCGAATCACGTGGGCTCCCGGACCGACCGTAAGGCTGCCTCCAGCAGGCTTCCGTCGACCTGGGGGGCTTCGTGAACGACGCCCGCATGACGTACACCAGTCGGGACGGGACTGCTTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-19.00,-16.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //