Array 1 75206-74517 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSRN01000024.1 Actinomyces naeslundii strain S65A S65A_contig024, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 75205 37 100.0 33 ..................................... TACAACCATCAAGATTGACAGTACAATTACAGG 75135 37 100.0 36 ..................................... ACCCAAGACTAACGTGAGGGTGCATGCTTTCTTTTT 75062 37 100.0 33 ..................................... ACGACGAGCACGATCTTGGACATGTTTCCTCCT 74992 37 100.0 37 ..................................... GCGAGAAGGTTGAGATAGACCCACTCCGCTACCTTCT 74918 37 100.0 36 ..................................... CGGTTCAGAATCCCCAGGAACTTCTTGGAGCGATTC 74845 37 100.0 34 ..................................... TCATCTGGACTCATCTCAAACCAGCGAACCAGGA 74774 37 94.6 35 .............TC...................... TTGACATTTCCAAACGCCTTGTCCATGCCTTGCTC 74702 37 94.6 38 .............TC...................... TCCATGGACCCGGGTCGCCCGGGTTTATAGACAGACTC 74627 37 97.3 37 ...........................A......... GCGTGAAACGCTGCGAGAGCTTGCTGTAGATCGTCCC 74553 37 94.6 0 .............TC...................... | ========== ====== ====== ====== ===================================== ====================================== ================== 10 37 98.1 36 GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Left flank : ATCGCCATGGCTGTCTTGGCCTTCATCGGGCTGCCGCTGAGCGTGTTCCTGGAGATCTGGTCCAACTGGGAGTCCAGTCAGGGCATTGCGGTCCGGCACCAGCACATCGGCGGCTGGGACGCGGGATGGGGGTGGATTCTTGGCTTCGGTCTTATCGGGTCGGTCCTCATCGGCGGTGGGATCTGGCTGGTCGTCGACAAGCTGGGCAGCCGGGTGGCCCGGCGGGGGAAACGCCCTTGACGCCGAGTCCAGAGCCCGGCTCCATCTCCACCGCAGTAGGTTGTGTCCACAGCCACAGTCCGGAACGTCGACCTTTTGGCTTGACGTCGTTGGAAGTTGGTGGCTGGAGGTGCCCGAGGGTGCGTCGGTGGCGCTTGGCGTCAGGACGCCGAAAGGTGGTTAAATAGGGGAGGTGCCGGCCGGTCCCGCGGGGTGCTCGCGGAGCCGGTGGCGCTCCAGCCCCTGGAAATGGCGCAATGACGCCCCTCCGAGAGGCAGGG # Right flank : CACGGGGTAACCTCCGCCGTTGATGCCATCGTGAGTTGCCAACAGGGGTGGCAGGTTGATGAGCGGTGCCCACAGAACGGACATGAACCTTGTGGAGGCATCGGGTGCCGGGCAAGAACCGCAGAATTTCAACGCCTTCCACCAGCCACATAGGCTGCGGAACCGGCCATGTCCGCTGTGTGGACACGAAGCACTCGCGCACCGCGAGAGAATGGCCCACCCGACCACAAATCCGTTGGCGGCAGGCACCATGCCCGCGTTGATCTCAGGTGGATTCGTGCCAGGCGAGCTCGCAGGACCTCGCAGGACTCCAGGAGACGTCACGCAGCCGAAACGCCTAAACCACAGGCGCCGACCAAGCGGACGCAAGCAAAAGCGGGCGGCACCGAGAAGATCGGCAGCCGCCCACTCGTCGCCCGCTCACGAGTGCCGTCAGCACACCGGGCCGGTCAGTATCCAGGCCCCGCGCCGCCCCCGCTTCAGCCGCGGCGCAGGCGCAG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Alternate repeat : GTCAGAAAGCACCTCGCACCAGAAGGTGCATTAAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,14] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 2 91246-91572 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSRN01000024.1 Actinomyces naeslundii strain S65A S65A_contig024, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 91246 37 100.0 36 ..................................... GCACAATCCTGACGCTCTCGAGGATGCTACGGCCGA 91319 37 100.0 37 ..................................... CCCGTAATGTCGGCGGCGTCAACCTGAAGACCATCGA 91393 37 94.6 34 ...............G..........A.......... GGGGTGATCTATGAGATCAGCATGCTCACATCCA 91464 37 97.3 35 ...............G..................... GGGAGGTATCAGAGCGGCGAGTGGACGACAGTCGT 91536 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 98.4 36 GTCTTAATGCACCTTCTGGTGCTGGGTGCTTTCTGAC # Left flank : GGTGCCCTTGGGGATGCCGAAGCTCAGGAGCGGGTCGGGTTCGTAGGTTCCTGAGCGCAGGGACTCGGAGAGCTCGGTGAGGAAGTCATCGAGATGCTCGGCGAACTCCTTGGTCTTGCGCTGCAGGATGCCGTCGGAGGCGTCCTTGGTGAGGACCATGCGCCAGCCGTCCTCCAGGCCCTCGCGGGAGCTGATGCGCTCGAACAGAGTGCCAGTGGCCGCCTCGGATGACGCAAAGCCCGCCGCGTGCTGGAGCGGGTGAATGTCCTCCCCGAGGTGCTGGCCCGGTTTCGCGCGATCGGAACGACGGCGACGACGGTGTGGGCGGGGTGGAGGTGGTGGTGTCGTTGACAATGGTGGTAATGGCTGAGTTGGACGCATCATTGCGGCCTTTCAAGGGTGGGAACGTGAAGTGGTTCTGAGAGAAGGATATCGAAATAGTGGGGGTGAAGGATGGGGGTTGGTGATCTGTGGTGGCCCGGGCACATAGCCATGTGCAC # Right flank : CCCCCCTGCCTCTGGGAGTGGCGTCGTTGCGCCACTCCCAGAGGCAGGAGCGCCACCGACTCCGCAAGCACCCCGCGGGACCGGACAGCACAACTCCAGTTTAACCACTTTTCGGCGTCCTGACGCCAAGCGCCACCGACGCCCCCTTGGGTGCCTTCAGCTACCAGCTTCCAACGACGTCGAGCCAAAAAGTCGACGTTCCCAAACGTGACTGTTGACACTATCCGCTCCGGTCTCCGGTTCGACAGGACTTCAGGCTCTCCCGGCCGAGGAGTGCAAGGCGACCGACGGGAGACGGTCTCGATGCGCCTTACTGGTGTGTGAGGTGCCTTCTACTGTCAGGATCAAGGGTCATCAGGGCCACGGTGTTGTGTCTTAATGCACCTTCTGGTGCGAGGTGCTTTCTGGCGAGCAGCAGCTCTCACTGCGCGCAGCGACGCGGTTGTCTTAATGCACCTTCTGGCGCTGGGTGCTTCCTGACGGGCGACCTGAGGGGCGCC # Questionable array : NO Score: 2.98 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATGCACCTTCTGGTGCTGGGTGCTTTCTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,14] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //