Array 1 163272-161608 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXJN01000001.1 Salmonella enterica subsp. enterica serovar Heidelberg strain BCW_2024 NODE_1_length_380425_cov_3.94371, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 163271 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 163210 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 163149 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 163088 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 163021 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 162960 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 162899 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 162838 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 162777 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 162716 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 162655 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 162594 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 162533 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 162472 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 162411 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 162350 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 162289 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 162228 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 162167 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 162064 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 162003 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 161942 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 161881 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 161820 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 161759 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 161698 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 161637 29 96.6 0 A............................ | A [161610] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 180533-179529 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXJN01000001.1 Salmonella enterica subsp. enterica serovar Heidelberg strain BCW_2024 NODE_1_length_380425_cov_3.94371, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 180532 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 180471 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 180410 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 180349 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 180288 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 180227 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 180166 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 180105 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 180044 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 179983 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 179922 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 179861 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 179800 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 179739 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 179678 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 179617 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 179556 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //