Array 1 21174-21602 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEDAQ010000019.1 Staphylococcus felis strain HARRANVET NODE_19_length_48590_cov_219.396554, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 21174 36 91.7 29 ...........GC............A.......... ATAAGCATGTGACTAAGAAAAGAGGAATA 21239 36 97.2 29 ...........G........................ AAGAAATGACGTTACCAGAGTTGATTGAG 21304 36 100.0 29 .................................... GAAAAGCATAACCTTAAATGCGAAAACTG 21369 36 100.0 30 .................................... TGTGGGCGTGGAGGACACGCAGCACACGTT 21435 36 100.0 30 .................................... TCGAGAAATGGGAAGAAAAGGAACGAGCTA 21501 36 100.0 30 .................................... AGTAATAAAAACAAAACCAGTGTCTATGAA 21567 36 97.2 0 ..............G..................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 98.0 30 GTTTTAGAACTATGATTATTTAGAAGGAAGTAAAAC # Left flank : AAGTGAAATTAACAAAAGGAAATTATTCATCGATTTACTTAAAGACGATGATAAAGAAAATGTATTACTTATATTGTACCCAGAAGCATTTTTGGGGCTCAAAGATATTCAAAGATTTCTACAATTGATTAAAAGTTATCAACTCACAACCATTATAATTACAAATCATCCATCTATTATCATTGAGGAAGAAAATGTTTATTTATGCAAAAGCAATAAAGAGTGTCACTCAATCAAAGATATAAGGGAAGATCTAGAAATTCTTATGCCACAAGAAACAATTAATGACAAAACGGTTAGAATGATTGCTTATCATGAATTCATAGGTACAGATTTAAAAGAACTAGCACGATATTTTGAGTTTATTAATGATTACAATTAAGATATAATTGAATTTACTATGATAAATTAAAAACAACAAGCTTTATTCAATGTTTAACTTCTTAACTAAAAAGCTAAAACCTCAAAATGGTAAAAACTATAGTGTGTATTTTTGAATT # Right flank : CAATCTGGAAAAATAAGAATCAACTCCTTTGTTTTAGAACTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTATTTAGAAGGAAGTAAAACATATACAATATAGGCGGGAATATACCTACGGTTTTAGAACTATGGTTATTTAGAAGGAAGTAAAACATATACAATATAGGCGGGAATATACCTACGGTTTTAGAACTATGGTTATTTAGAAAGAAGTAAAACTACGTGGTACTGATGATGGTATCTGGAGAGTTTTAGAACTATGATTATTTAGAAAGAAGTAAAACTTTATTTTTTTGGATTAAATTTCATAGGCTGTTTTAGAGCTATGATTATTTAGAAGGAAGTAAAACATTTCGACTTTTTGGCATGATGCGCATAAGGTTTTAGAACTATGATTATTTAGAAAGAAGTAAAACATGAT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAACTATGATTATTTAGAAGGAAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 21798-22622 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEDAQ010000019.1 Staphylococcus felis strain HARRANVET NODE_19_length_48590_cov_219.396554, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 21798 36 94.4 30 ..............G..........G.......... ATATACAATATAGGCGGGAATATACCTACG 21864 36 97.2 29 ..............G..................... TACGTGGTACTGATGATGGTATCTGGAGA 21929 36 100.0 30 .................................... TTTATTTTTTTGGATTAAATTTCATAGGCT 21995 36 94.4 30 ........G................G.......... ATTTCGACTTTTTGGCATGATGCGCATAAG 22061 36 100.0 30 .................................... ATGATGTACGTACCATGTACATTGTCCCCA 22127 36 91.7 30 .............AT..........T.......... ACGCACTTTTTGCAGCATTCAACGCGCTTC 22193 36 97.2 30 ............C....................... CAAATTAACGACAAATACGATTCCGAGTTC 22259 36 97.2 29 ............C....................... GACGCGCGCATTTCAGTATCTTCGTACAC 22324 36 97.2 29 .........................G.......... GAAATAGCGAAAAAAGATTTAACGGCAAT 22389 36 97.2 30 ..............G..................... ATTTCGACTTTTTGGCATGATGCGCATAAG 22455 36 100.0 30 .................................... GCCTTTGACGTTTTCCAGTAATACATAAGA 22521 36 100.0 30 .................................... ACCTGAAATGATTGCAGTCACGCGTCGAAT 22587 36 91.7 0 .........................T......T.C. | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 96.8 30 GTTTTAGAACTATGATTATTTAGAAAGAAGTAAAAC # Left flank : ATTGAGGTTTTAGAACTATGATTATTTAGAAGGAAGTAAAACGAAAAGCATAACCTTAAATGCGAAAACTGGTTTTAGAACTATGATTATTTAGAAGGAAGTAAAACTGTGGGCGTGGAGGACACGCAGCACACGTTGTTTTAGAACTATGATTATTTAGAAGGAAGTAAAACTCGAGAAATGGGAAGAAAAGGAACGAGCTAGTTTTAGAACTATGATTATTTAGAAGGAAGTAAAACAGTAATAAAAACAAAACCAGTGTCTATGAAGTTTTAGAACTATGGTTATTTAGAAGGAAGTAAAACAATCTGGAAAAATAAGAATCAACTCCTTTGTTTTAGAACTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTATTTAGAAGGAAGTAAAACATATACAATATAGGCGGGAATATACCTACG # Right flank : CATTTTTTCTGAATTTTTAGATATAATGATGATACTGGAATGACCAATTGATAATCAATAATCGAGAAATCTTAATGATACATGTCTTTTCTTTTCATTGATATAATGAAATGATATAGTCAATATTTTTTAGAGAAGATTGTTTTATTTTATTAAGAAAGGGGAAGTTCGATGAAGTCTATTATTGCAAAACACGCTTTTAAATTGTCAGATGGGAATTTATTTGAAAAAGTGACACGTGAAAAACCAATAGTGAATGCTCATGAAGTAGGAATAGCTGTTCATGCATCAGGTGTGAATCCGATTGATACAAAGACGCGTCAAACACCAGTTCAGACTGAAGCACGTGTATTAGGATATGAAGGGGCAGGTGTTGTTGAAGCAGTAGGTGAAGATGTGACACGTTTTAAAGTAGGGGATCGTGTGATGTTTGTCGGTGCACCTAAATGGGAAGGGTCGAATCAAACTTATCAAGTATTAGATGAAGCGTATATGACGCA # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAACTATGATTATTTAGAAAGAAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [5-5] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //