Array 1 5297-2489 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRIE01000034.1 Prevotella copri strain AM22-2 AM22-2.Scaf34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 5296 37 100.0 38 ..................................... ACTTTAATCTTTGTAGCTCTAGTATGATAAGTCACACC 5221 37 100.0 37 ..................................... CTGACAGTACAGTTACTGTCTGCGCTGCCTGACCTGT 5147 37 100.0 35 ..................................... ATTTTATAATAAGTTTGTAACTAATATAAGAAACT 5075 37 100.0 37 ..................................... CAACTGAACTGCGCTCATAGCACTGTGCTTTACAGTA 5001 37 100.0 34 ..................................... TAGCTGGTGCACCTGGAGCCTGTTGAGCTGGAGG 4930 37 100.0 37 ..................................... TTTTATAATAAGTTTGGAATTAATAAAACAAACTAGT 4856 37 100.0 37 ..................................... TTTACGCGCATAACACGATGAGCACCAGCAGAATACT 4782 37 100.0 34 ..................................... GAACTACATTGATAGTTGCACCATTTGCTGCACT 4711 37 100.0 36 ..................................... GAGCATTGCTTTCAACATTAACACGAACTTGAGCGA 4638 37 100.0 35 ..................................... ATCCATATTAACGTAAACTCTTGCGAGTTGTAGTC 4566 37 100.0 38 ..................................... AGCACTACGCTCAGTCTGCTCAATATCAACTTTAGCAC 4491 37 100.0 39 ..................................... AAAACTAACTTGAAGTCTGTAGGAAGGCTGTCAGGATAA 4415 37 100.0 37 ..................................... AGACTTAGTATAAAGCCTTGTCTCGTACTTGCACATA 4341 37 100.0 36 ..................................... TAATAAGTGTTTAAATTAATAAAACTAGCATAAGCT 4268 37 100.0 37 ..................................... TTCTGAACTGTCAAATTAAGATTCATTGATTTCATAA 4194 37 100.0 35 ..................................... TTCTTAATGATGCCAAGCAGAACACGAGTGTACAA 4122 37 100.0 34 ..................................... ACAGTATAGTCCTTTGTTTTATCGAACTTCTCAT 4051 37 100.0 37 ..................................... TTTCTCTGCTTTTTTGTTTTTACCTGTATGGTAATTT 3977 37 100.0 37 ..................................... TATGTGTTCCGTCATTGATAGCTTTTTCCTTGCCGTC 3903 37 100.0 36 ..................................... CAATGTGCACAAGATTGTTCAAATGGGTAATACCAT 3830 37 100.0 35 ..................................... CAGTCATCTGGGTTTTCAAGAGTAAGCTTTACACA 3758 37 100.0 35 ..................................... TTCTTGCACCATCAACACCATCAATTAACACGTTA 3686 37 100.0 37 ..................................... CAGGCAAAGAAGCACATTGTGGCACCACTCTTATGTG 3612 37 100.0 34 ..................................... GAACTACATTGATAGTTGCACCATTTGCTGCACT 3541 37 100.0 35 ..................................... AATTAGCCACTCTAGCAAGACCTCAACCAACACGC 3469 37 100.0 34 ..................................... CTATTCCAAAGAAGAACAGCATTGATACAATACA 3398 37 100.0 37 ..................................... TATGGAGCTCGTCGTTGGGTGTGGAGAACGCAACAAA 3324 37 100.0 36 ..................................... AAATTCACCCTTTGAGTTAAAGGTGGCAATGTCGTC 3251 37 100.0 37 ..................................... TTATCTGGGAATGCCACCAACAAGTTGTCGATGGACA 3177 37 100.0 37 ..................................... ATCAACACCATCTATGAGTACATTAGCCATCACAGCC 3103 37 94.6 36 .....A.........................A..... TTGACATCGCCATTTTTACCAACTGAAATTGCTGAC 3030 37 89.2 37 ....TA......TG....................... TCAATGACCATGAATTCATAGTCATTACCGTTGAATG 2956 37 91.9 34 .....A......TG....................... AGCCCTTCGATGGTGATACCTGATGCTGACAGCA 2885 37 83.8 36 .....A......TG....T.....C.......G.... CTATTGTTGCCTTGCTCATGCATGATGAGCATATGG 2812 37 81.1 35 ....AA......TG....T.....C.......G.... CCTATTACGAAACCATTTCCACTTTCTTGACGTTC 2740 37 94.6 35 .....A..................C............ TCATCAGGAGCGTAGCTAATTACTCTTGTACCATT 2668 37 83.8 36 .....A.G....TG..........C.........A.. AGACGCATGTTCTCACTACCATTTGCAGCCTTTACC 2595 37 91.9 35 ....TA............................T.. AACACATCACCCTTCTTCCAAGCGAACTTAGACCA 2523 35 78.4 0 .....C.......G..G.T...--.........T..T | ========== ====== ====== ====== ===================================== ======================================= ================== 39 37 97.2 36 GTACGTGACCATCTTCCACTACAATAAGGATTAAGAC # Left flank : TCTCCATATGTTTATGGTTTTGATTTACGGGTGCAAAGATAAATCGGGATTTTGAATTTGTATTTCACTGGGTCAATTTTCTCGGATTTTGTTGGTTAGAGGTTGATTTTTACACCTTTTATATGGGATATGGATTATTCGTTCATCACTTTTCTTGTTGTCGTTAGAATCTTTAATGGAGGGGAGTAATGGATATGTAGGATTCATGGTTAATGGTAGGAGATAGCCTTCTTTTTCTGAAGTTTGTTAGTGCTGAATGGTGGGGTGGTGGGTGGTCTTGTCGTTTGCCTTTAGGTTTCTGTCTCCCTATTTGGTTAACAGAGTTAAATTTTGGGGATAAAAATGGCTAAATATTTAAGAATAATTGGCTTGCATATCTCGAAAAAAAGTCGTACCTTTGCACTCGCTAAGAAATAGTTAATTTTCGGTTAAGGAAAGTGAATATTTGTTTAGTGAAGTTCTTTAACTTATTGATAATCAGTAAAGTCTTATAAGGTCGA # Right flank : TATTTGTTTGTGAGTTGTTCATAGATTATTTTGTTTCATAGGTAGGGTTAATCGTTGCATGAAAAAATCCCATATCAAGGTTGGTGCCCTTGGTATGGGATTGATATTAATATTCTTAAGCAGGAGCTTCTTTTTTCTTACTTCTGGTAGGAATCATAGAGTTCCTTGGTCTTGTCTTCACCCAGGAAACCGGACAGCTTTTTCCAGATTCCACTCTTGTCAAATGGCTTGGCAAGTTCCTTCACTTCCTTCTTGGATGGATCCTGTAGCAAGCGGGTTGAGGTATTGTAGAGGGCGTTGCTGTCGGATTCGTTGAGCTGTGATGCCTTGAAGTCTTTCAGCCATTTTTCCACCTTCTGGAAGCATACCTTGAAGTCCTTGATACTATAGTTTACGCCATCTCCTGCGAGTTTATCAAGGGTGGTGCCAAGACCAGCAGCATGTTCCTTTTCTTTAGCTTCCTGGGCAGCCTGTGCTGCTTGTTGCTTTTTCTCTTCTTC # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACGTGACCATCTTCCACTACAATAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [40-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 11806-10602 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRIE01000034.1 Prevotella copri strain AM22-2 AM22-2.Scaf34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 11805 37 100.0 34 ..................................... AATGGGAGCAAGGCTTATTCAGCCCTGCAATCCC 11734 37 100.0 36 ..................................... GTTCAACTTATTTATTTCACAATTATCCTCTTTGTG 11661 37 100.0 35 ..................................... AGACTGACCTCTTACTTTGAGGAACTCAGCAACTG 11589 37 100.0 36 ..................................... GCAGTAACTGGGTCAGTAGCCATCATCATAAACGCA 11516 37 100.0 37 ..................................... AAGTTTTACACACTTACTCTCAGATACTACGTCACTA 11442 37 100.0 36 ..................................... ATAGCGTTCACAAAGTGAACAAACTGACTCATTGTG 11369 37 100.0 37 ..................................... TCACAAATATTCATTGCTAAATAATTATTCATAATAA 11295 37 100.0 35 ..................................... TTACGGAGTTTAGTTCTACGACACTTATCAGCAGA 11223 37 100.0 37 ..................................... ATTGATGGCATTACATGGATTAAGGCACCATTTGCTG 11149 37 100.0 35 ..................................... ACTTGTAACCGGCTAAGCTAGGTTTAATCAAGTTA 11077 37 100.0 35 ..................................... AACTATAATGTTTGGAGTTGTATTCCCAATATATT 11005 37 100.0 37 ..................................... CTCATGCATGATAAGCATGTGATTGCCATCCTGCATT 10931 37 100.0 37 ..................................... AACAGTCTCAATGAAATTGTTGTTTGAACTCTGTGAA 10857 37 100.0 35 ..................................... CTTTATTGCGTGCTTTAATAGTTTTTTCAAGAACA 10785 37 100.0 37 ..................................... ACTTTCTTGAGTTCAGCACTCACTGTTTCAAAACTTT 10711 37 100.0 36 ..................................... AAATAAACGATACTTTGACATAATTATATATAATTA 10638 37 89.2 0 .......G.........................TTC. | ========== ====== ====== ====== ===================================== ===================================== ================== 17 37 99.4 36 GTACTAGACTATTGTCCATTACAACAAGGATTAAGAC # Left flank : CACTCACTCAATTTTCCCTTTTGCTACTTTCTTTTGCTTTATATTGTTTTGTAATGAATGGATTCAATGATGTCGCTAACAACTTAACCATAGCGGCTTTGGTTTTTCTGGGTGCAAAGGTAGGGGAACATAGTGAAATGATATTTCACTGGCTCATTTTCCTCAATTTTAGTTAGTTGTGGGTGCTTGCTATACCTTATTATATATGTGGTGAGATAGTTTTTGGTAGATAGATTTGTTGATTTATGGTTTTACGGTTGTGTTGTTTATTCTTATGTCGTAGAGTGCTTTTGGGATACCTTTGTGCTTATTGTTAATAGAATAAAATTCTGATGCATAAAATACCAAAAAAATTAAGAATAATTGGCTTGCATATCTCAAAAAAAAGTAGTACCTTTGCACCCACTAAGGAAATAGTTAATTTCCTGTTAATGAAAATAAATATTTGTTTAGCTTAGTTCTTTAACTTATTGATAATCAGTGTTGTCTTATTAGGTCGA # Right flank : TGCCGTATAGTTCCTATGTTTCTTGATGTTGCTGTTTTTTCTACTAAATACATTGATGAATTGATATAACCCATAAATAGAAATGCAGACAGTAACAAAAGATTAACGCTTCAATGTGTTGGAATTTCAAAGGAAGTTGTATCTTTCAGGCGTAAAATGTAAGATAGCGCTAGAGGACAAAGCTACGTTTCTACTTTGTTCACCAACGTTTTCAATGTTAGTTGGATATTTACAATAATTGAGATTGTGTAGCAGTGCCTTGATTAATGGGGGAAGTTTTAGGTATGCTAACTTTTGAGCAGTCTCTCCTTAAGGAATACCTAAATGTGGTATTCCCTAGGAGTAGACCTTATCAGTTCTTAGATAGTTAAGGATAGGACGAAAATGCTTTATTTGACATTTTTTTATTTGAAAAATCATGGAGTCTTTTGCCGATGATGCAGTCTCAGTTTTGTTTTCCTACCTTTAGCGGATGTGATACATTGTGTGGATTTTCTATT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACTAGACTATTGTCCATTACAACAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.30,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //