Array 1 1927-2748 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABUFK010000023.1 Escherichia coli strain HUM-545 NODE_23_length_61945_cov_28.196451, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1927 29 100.0 32 ............................. TTAATACGGCGGTTGGCACTCGAATTAAAAAA 1988 29 100.0 32 ............................. TCGGGGATCGTAGAGTTTTTTACCCCAAACCT 2049 29 100.0 32 ............................. CGTATAAAATCTATGCGTTTTTTACGCCATTA 2110 29 100.0 32 ............................. CACCAGGGCAAAATATGGACAGCATCGGCGAA 2171 29 100.0 32 ............................. GAGCTGCGGAAATACGCGCGGGGGGCGAAAAA 2232 29 100.0 32 ............................. AATGGCCGGGTGGTGATGGGTTCCCGTTCACT 2293 29 100.0 32 ............................. CTTATAACCGGCGGCAAAAATCGTCGCGTTGG 2354 29 100.0 32 ............................. AGATTGGTTTTCCAGTCTTTGGCGGTTGGCAA 2415 29 93.1 32 .T..........C................ CTGTGCCGGTAGCCCCCTCCCTGTTCAGCCTC 2476 29 93.1 32 .T..........C................ TGTTTTAGAGATGTGTATTCAAAATCAGATAG 2537 29 100.0 32 ............................. AAATTGATCCCAGGGTGATTATCGTGGGGATC 2598 29 93.1 32 .T..........C................ ATTTCTTTAATTATTTAGCTGATGCTTTTAAA 2659 29 93.1 32 .T..........C................ GGTAAAAACACGGTCTGAACCGACATTCATGT 2720 29 96.6 0 .T........................... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 97.8 32 GAGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTGTATGTAGGTGTTGTATCCGCAAGAATCCGTGAAATGATCTGGGAACAAATATCTGGACTGGCGGAAGAAGGCAATGTGGTGATGGCATGGGCTACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACTCCGGTAGATTTGGATGGTTTAAGGTTGGTCTCTTTTTTACCTGTTTAAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 20674-18629 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABUFK010000021.1 Escherichia coli strain HUM-545 NODE_21_length_63838_cov_29.326955, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 20673 29 100.0 32 ............................. CGTAGATCTAAATCTTCTTTTATTTCATAACC 20612 29 100.0 33 ............................. TGACGAGTCGAAACCGGTTATCTGTAATTGCAC 20550 29 100.0 32 ............................. CGACGTTTTCCAATATCACCCAACAATCAATT 20489 29 100.0 32 ............................. CGCCGAGGCTCACTGCGCTGTAATCACAAATG 20428 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 20367 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 20306 29 100.0 32 ............................. ACAATCAGGGAACGATTGTTGACACTGTAAAA 20245 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 20184 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 20123 29 100.0 32 ............................. CATTTTTGCGTGACGAGCTGCGCCGCGTTCTG 20062 29 100.0 32 ............................. CGCCACCAGCGATAGAGCCGCAAACAGAGCCG 20001 29 100.0 33 ............................. GATATGGCAATGAGTAAATATACATATTTAAAC 19939 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 19878 29 100.0 32 ............................. CGAGCGCCGTTGGCTACTGGCGTAGCCGTGGA 19817 29 100.0 32 ............................. CGCCCCTTTTTCAGATCCAATGCTGCAGGCGT 19756 29 100.0 32 ............................. GCGTCTCGAGCGCCGGACGATTCAAAACCAGC 19695 29 96.6 32 ............................C AGGTCCTCGTCAGATACAGTAGTCACAACACC 19634 29 100.0 32 ............................. CACTGACAGTGAAGCTGAATTACAGGCAGAGG 19573 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 19512 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 19451 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 19390 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 19329 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 19268 29 100.0 32 ............................. TGGCAGGCCGGTAATATGAAAACGACAGAGCA 19207 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 19146 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 19084 29 100.0 32 ............................. CAGTTGAAGCGCTTTAAAAAATTCTGGACGGC 19023 29 100.0 32 ............................. AGATCGACATGAGCCGCCGCGCGACGAATAAC 18962 29 100.0 32 ............................. TACCGATAATCGGTACAAGATAGTATTTACAT 18901 29 100.0 32 ............................. GACTATCGCGGGCTGCTGAAATCAACCGGCGA 18840 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 18779 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 18718 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 18657 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 34 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //