Array 1 64936-63870 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNYW01000002.1 Escherichia coli strain MOD1-EC6079 MOD1-EC6079_2_length_326030_cov_23.2807, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 64935 29 100.0 32 ............................. CGGGGTCATAACTGGTTTTAGCCTGCACTGCA 64874 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 64813 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 64752 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 64691 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 64630 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 64569 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 64508 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 64447 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 64386 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 64325 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 64264 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 64203 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 64142 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 64081 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 64020 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 63959 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 63898 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCTTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 91762-90635 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNYW01000002.1 Escherichia coli strain MOD1-EC6079 MOD1-EC6079_2_length_326030_cov_23.2807, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 91761 29 96.6 32 ............................T TCATCTTCTTCCTCCCAGCGCTGCCGCTCCGC 91700 29 100.0 32 ............................. TTGAACGATTTTGACCTGCGCCGTTTTGAGTC 91639 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 91578 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 91517 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 91456 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 91395 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 91334 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 91273 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 91212 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 91151 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 91090 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 91029 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 90968 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 90907 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 90846 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 90785 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 90724 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 90663 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCTAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //