Array 1 159215-161135 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTAQ01000002.1 Pectobacterium odoriferum strain S6 Scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 159215 29 100.0 32 ............................. CACTGGCGGCATCACCGGTCAGCTTCCATCTG 159276 29 100.0 32 ............................. ATGGGCGATCTTTTTTGTGTGGAGCGTGTAAA 159337 29 100.0 32 ............................. CGTTGACAGTATTTAAAAATAGTATCGGACAA 159398 29 100.0 32 ............................. ATAGTCCTCCGTTCGGAACCATCCCTCGTTAA 159459 29 96.6 32 ............................A GCCGAGCGGCTTTTAAACGCGCTCGGCTTACT 159520 29 100.0 32 ............................. CTCTTCCTAAAATGCCGGACATTAATCCCATC 159581 29 100.0 32 ............................. CGCTGCGCTACAGCGTGCCGATGTGGTATCCC 159642 29 100.0 32 ............................. CGTAATCACTTTGCTATCCATTATCATTAGCC 159703 29 100.0 32 ............................. AACGCCGCCCCGTTAACGATGGGTTCATCCTG 159764 29 100.0 32 ............................. AATGCGTTCATAGTCGGGATTGGGGCGATTAT 159825 29 100.0 32 ............................. AATTCTTCCAGCGCATCCAGGCGTTCAGTAAT 159886 29 100.0 32 ............................. CGGCCGTTGTGCTGCGAAACATGCAGCGTTAT 159947 29 100.0 32 ............................. ATGTTGCGCCAGTTGCCGAAGTTGTTGCATGT 160008 29 100.0 32 ............................. CTGTAGCGCCGTACCCGCGCCAGTTGCACGCA 160069 29 100.0 32 ............................. TTCAATGTCCAACCGTTACAAACGCGGCGGAT 160130 29 100.0 32 ............................. CGTTGAACTACTTTTTCCACGCCTTCGTCTAT 160191 29 100.0 32 ............................. TATTCAGCGTCAACGGGCACTGCTTCAATGTC 160252 29 100.0 32 ............................. ATCGGCTTCTGATTGCGAGCTGTAATGAATGT 160313 29 100.0 32 ............................. CATGATTTTTCCACAAAAAAATGAGTGCTGCT 160374 29 100.0 32 ............................. CAATAGTCCGACTGTTTTTTATTTATTAGTAC 160435 29 100.0 32 ............................. CGGAAAATCTGGCGCTCACAAAATGGGATTTA 160496 29 100.0 32 ............................. GCTGCATCACCAGTCATCAATATCTATGCTGA 160557 29 100.0 32 ............................. CTATAAAATGGGCTGTTGCTAGGCTTGCAAAG 160618 29 100.0 32 ............................. CGCCCGCCCCAACTGCCGCCCAGCGATTCCCA 160679 29 100.0 32 ............................. CGCCGTCATCTTGTTCATGTGGCGATTCTGGA 160740 29 100.0 32 ............................. ACGAACGTCCCGGCTCATTTGTCCAAGCATAT 160801 29 100.0 32 ............................. CCTGATTAACTAATTGCTGGGCGCTGCTTAAA 160862 29 100.0 32 ............................. ATTTCCGACAATACCAGCGGCCTGCTGGATGA 160923 29 100.0 33 ............................. ATACGCTATCTGCTGCTTAGGTGCCGTCTTCCA 160985 29 100.0 32 ............................. TATGTTGAAGACGCCGGACACAGGTTCCTAAA 161046 29 100.0 32 ............................. CCCCCTACGATTACCAAAATAATTATGCGTTG 161107 29 93.1 0 .........................C.T. | ========== ====== ====== ====== ============================= ================================= ================== 32 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGAAGTCTTGTCTGCGGGGGGCATTACGCCGCCGCTACCGCCGGACGATGCACAGCCGCCAGCAATCCCAGAACCGAAACCGTTTGGTGACAGCGGCCACCGGGGGCAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGTTTGCGCGGCAGGCTGGCGGTGTGGCTATTGGAAGTCCGCGCGGGAGTGTATGTCGGTGATACCTCACAGCGGGTGAGAGAAATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTGATGGCGTGGGCGACGAATACGGAATCCGGTTTTGAGTTCCAAACTTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : GGGCTTATACCCCTTGTTGCATGTTGGTCTAAATATCCCCCGCACGGGGCCAAATCCCGCTTTTGGCTGGCGCGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCATTTTTTGTGCTCACCGTAATGGTGACGCGCTATGCCAATGATTTTTGTCTTCCGTACGTTACTGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGCCGTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCTACCGAGCATGCAGAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCAGGCGGGAAGCGGTGCCGTTCCTGCTGGTCAGACGACGCGGTATGATTTCACCCGCATTAGCCCTGCCGAACTGTATGAAACGGTTGAAGGCCTTGTCAGCAGTGGTCGGCTGGGACGTGAAGAAGGGTCCGCGCTGCTGGGTTTTGTCTCATCGCCGAGAGCCGAAGGAGGAAGCATTCCGCCTTCCAATGTGTTCCAGCCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 18861-19433 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTAQ01000011.1 Pectobacterium odoriferum strain S6 Scaffold11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 18861 28 96.4 32 T........................... TGTCACAGAGGCGACAATCCCACTACCACCAA TA,G [18864,18867] 18924 28 100.0 33 ............................ TACTAATTAATCAATCAGGAGTTACCCATGCAG 18985 28 100.0 32 ............................ CAGTGCGAAAGACGTTGCGCATTCGCTATAAC 19045 28 100.0 33 ............................ ATGCGGATAGTATGACGGGATTATTTTTACGGA 19106 28 100.0 32 ............................ TGTCCGCGAGTAAGGCGCAGGCGCACGTCTTT 19166 28 100.0 32 ............................ GCGGCGTTGTCGAGTGAGCAGAGCGCAGGGTC 19226 28 100.0 32 ............................ ATCATGGGTGTGGATTGGAATCGGGCTTCGAC 19286 28 100.0 32 ............................ CAGCCGCGCCAGTTCGTTGAACAGCGCCCGAA 19346 28 100.0 32 ............................ GTTAATTAGAACTCGCAATGCCAGCGATTCAA 19406 28 75.0 0 ...........C.C......T.C.TCC. | ========== ====== ====== ====== ============================ ================================= ================== 10 28 97.1 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : ACGGACGCCTGAACATCGGCACCTGGCAGGGCATCTACCTGTGCGAACACCGCAACCACGGCGGCAGCCGCTCGCTGGTTGTCACGCTCAACGGGGAATAGCTCCCCGAAATGCGTCGCGCCAGCGACGCATCCCGATAAGCCTCGAACTGTCTGTACGGCAGTGAATCCTGAACCCGCAAGCCAGCCTTACGCTGTGCCTGTCTAAGCTGCCTATGCGGCAGTGAACCGCCGTGCCTGGTTGCGCATCGTTCCCTTGTTTTTCTAAGCTGCCTATACGGCAGTGAACGATTTTAGCCGCTAAAAAAGCCAGCCTAAGCTTTTCTAAGCTGCCTATACGGCAGTGAACGGGAGACAGGTTGTTTTTCGATGTGTCGGTTATTTCTAAGCTGCCTATACGGCAGTGAACATAAACCCAAAATCTAGTCACCATATGGTCAATTTCTAAGCTGCCTATGCGGCAGTGAACACCCTCAACAAAGCGCGAGCGGTTATTCGCAA # Right flank : ACGACCTTAAGCGCTGTTGTCTGGCTATTATCGAGGTAGTACTGCGCCAGCGCTCACCCCCCTTAAATAACGAATATTGATGGCCTTCTTTCGTAACGTTTTTAAGTAATGAGTTTCTTTTAGAGGGAATGAAAAATTGTGGGGTCGGCATTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTGTCCTTATAGGGGAATAGCACGTTGACTTAAGTCAAATTCAAGGGAGTGAGTGACTGTGAAATACGATCCCGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAACAGCATGCAGATATTAATTATCAGAAATTACATGCTCAACTAAATGAAATAAATAACGATAATATTCATGCCATATTGACTGCACAGGAAGCAACGTATTTTTTAAAGACGTTATGCACACCCAATCCTAATGACTCTTGGAAAACAGCAATATTTGGCTGTACCGATCCCATCTCGTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 26868-26300 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTAQ01000011.1 Pectobacterium odoriferum strain S6 Scaffold11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 26867 28 100.0 32 ............................ ACTCGTCCCCTCGGCGCGGGATATCGCATCAA 26807 28 100.0 32 ............................ ACAGGAAATCATGCAGCAGCTTCAAAGCAATC 26747 28 100.0 32 ............................ AAGGCACGCGAAAAGTCGCAGGGACACATTGA 26687 28 100.0 32 ............................ GTTATGACGAGCAGGGCAATCAAGTCGGCTTC 26627 28 100.0 32 ............................ TTGCTGAACCTTAAACCACCACCTTAAACCAC 26567 28 100.0 32 ............................ AGCATATTGCCCTCCTGTGGCGTTATACAAGT 26507 28 100.0 32 ............................ AGTGTCAACTTTTTCTTACCGCGATCCATTAG 26447 28 100.0 32 ............................ TGTGGAACGCTTTGGCGCTGGCACTCATAGTG 26387 28 96.4 32 ...........C................ TTTAACTTTTCTTGCGCACAAACTCGTGCTGG 26327 28 82.1 0 AC...........C......T.A..... | ========== ====== ====== ====== ============================ ================================ ================== 10 28 97.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : ATCCTGGCGTTCTGTCATAAAGTCAGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGTTTGACCGGACGCAGTATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACGCCTTCAAAGTCCATATCACGTGGCAAACGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGATGCACCTCCTCCTTAATACAGAATTCAGCCAGCTACTTACCGTTTATTATTGCTGGCTAAAACATCAGCTAAGTATAGATATTAATCACTCGACTGTATATCCATAGCATATGCAGATACTTGGCATAGGCCTATCGTCGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTTACGCATCGCCGTAACTCATTGATTTTTAATTTCGATTATCTATGCTGATAAAAAAGGGTTTTTCAGGAAAAATGGTTTATTTCCTTTTAAAATTAGGTAACTACCGTAAAATATGAACG # Right flank : ATAAAACGCGCCGAAAATCAGTAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCTCACTGCCTGACACTGTTTAGGGAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACACTGCTACAGACTAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTAGAACAGGCGCAGCTGATTCTCGGCTATCATGCCCGCCTGTCGCCGAACGCGGTCGGGCTGGAATGTCTGGGGTTGATTGAAGTGCGGTTGATCAATCACACCAGCGAATACGTTGAACGCTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTGGCAGATCTGCCCGGACTCAGCACCCTGATTAGCCAGATTCTGTCGCAGAACAAGAGCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //