Array 1 76971-76704 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRKW01000004.1 Cronobacter sakazakii strain cro780B3-2 contig4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 76970 28 100.0 32 ............................ TTAGATTGCGTGCGCTCGGCCCACTGAATCAT 76910 28 100.0 32 ............................ GCCAGATGACGGCGTCCAGGTGAACAAATCCT 76850 28 100.0 32 ............................ CGTGGGTGTGGGTAATCGAATTCCGTCGCATG 76790 28 100.0 32 ............................ ATCCACGCGGACTGAGAGCCGACTGCATTGCT 76730 27 89.3 0 .....................CG-.... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 97.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACTGCCTGTTTCAGGCGATGTTGTACGAACATTATCGATAAGAAAGCAGCAGAAAAATCCCTCTATACGATGCGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGCCTGGATGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCATTAAAAGCAACAATTTGTTTTTAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : ATCACAGCGAATTCCCTCGCCGTCACACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCGTTTGCCGCAGAGCAACCCGCGCTGCCCATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTTACGGTTCAGGCGGGTAAAACCGCGTTTGCCGGTAAAAATGTCACGACCTGGGGATATAACGGCTCGCTGCTGGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTCAATATCAATATCCGCAATAACCTCGCCGAAGAGACCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGGCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGCG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 795443-793584 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRKW01000002.1 Cronobacter sakazakii strain cro780B3-2 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 795442 29 100.0 32 ............................. GCGACGAGGCGGGCGCAGGCGCTGAGCCTGGA 795381 29 100.0 32 ............................. CTGCTCTGGCAGAATCCATCTTGGCATTATGT 795320 29 100.0 32 ............................. CGTTCATTTCATTGATGGTCATGCTTGCATGA 795259 29 100.0 32 ............................. GGGATTGAATCGTCGAACTGTTCTGCGCCGGA 795198 29 100.0 32 ............................. TTTGCGGCGCTAACGGCTGGTAAAGGCTCGCC 795137 29 100.0 32 ............................. CCATTTCATTTTCTGCGCCACACCTTGATTTT 795076 29 100.0 32 ............................. GAAAAGGAAAAGATAAAACCGCTACGAATAAT 795015 29 100.0 32 ............................. GCATATGGGATGAAATCGAAGATGCGCAAAAG 794954 29 100.0 32 ............................. CCAGCAGGAATTAATTATTAATTCCCGTCGCA 794893 29 100.0 32 ............................. CGTGCATTTGAATGCTGGACAGCTCGCTTATC 794832 29 100.0 32 ............................. AACGTTACCTGCCACGCGGCCGCGTAAATCCT 794771 29 100.0 32 ............................. GTTCAACAATAAAACGCGGATCACCAGAGTTA 794710 29 100.0 32 ............................. AGCTGGACGCCGCTACTAAGCGCGTGGAAGAG 794649 29 96.6 32 ............................A GGTGGCATACAGCTCGCATTCACCCCCTAAAA 794588 29 100.0 32 ............................. CGCCTGCCGACAAGCCGCAGCCCGGCGCGGAA 794527 29 96.6 32 .......A..................... GTTGAGATCACCATTGACCACACAAACGCGCC 794466 29 100.0 32 ............................. AGACCGTCGAAAACGTTCGTTTGAAGATCTGC 794405 29 100.0 32 ............................. CTATCGTTCCGGCCAGTAAAGTTCCGGCAGAT 794344 29 100.0 32 ............................. TCCCGGCTGAGTGCGTCGATACTGGCTGCTGC 794283 29 100.0 32 ............................. TGAACGTGTGGGTTTCGCGAAAGAACATATTT 794222 29 100.0 32 ............................. TGACGATAACCGGCTATCAAAAACCGCCACGC 794161 29 100.0 32 ............................. GATACAGTTTTGCGTTTCTGGTTTAGCCAGAT 794100 29 100.0 32 ............................. GCGTGACGCGGGTTACATCACACATGCCAGAC 794039 29 100.0 32 ............................. ATGCTGGCGACGGCTGGTCTGAATCCGTTGAA 793978 29 100.0 32 ............................. TTTACTTGCGATGCGCCAATGTGCCGTAAGTG 793917 29 100.0 32 ............................. GATTTCATGGTGAAAAAAATATATTTATTGCT 793856 29 100.0 32 ............................. GGCTCGCTTAGCGCAGCTGTTGGATGGGCCGC 793795 29 100.0 32 ............................. ATTTCACTCGTGGTTCCGGTCTTCAACGAAGA 793734 29 100.0 32 ............................. AACGGGCCCTGGAAGAACTTCTGGGAAGAGAT 793673 29 100.0 32 ............................. CACGGACTCAACGCCGTTCTGCGCTATCTGCT 793612 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.8 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : GATGTCCTCTCGGCTGGTGGTATTTCGCCTCCAGCGCCTCCTGCAGATGCTCAACCGCCCGCGATACCGCAAGCTGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTCGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCGTGGGCCACGAATAATGAATCCGGCTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTGGACGGCCTGCGCCTTGTCTCTTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGAATGTTGTTGCGCGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : TTGTTGAGTAGAATCGCCTGCCTTGGTGGGTGCGCTTCGCTTACCCACCCTACATCTATTGATTGCAAGGCCAGGTGGGTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGCGCCAGCGCTTATCCGACACACAAACTTTTCCCGCGCCTGCTCGCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCAGGCCCTCCACCGCGATAACCTACTTCTACTGCGCTGATTTTAAGCATCCACTTCTGCGTTTTCCCGTTCTTCCCACAGCTATTTATTTCCGCGTTGCAAACCGCTTTATTTTATTCTGTCGTTTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 822549-821322 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRKW01000002.1 Cronobacter sakazakii strain cro780B3-2 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 822548 29 96.6 32 .C........................... CTAAAGCCTTTGCAACAAAAGCGAAATCATTT 822487 29 96.6 32 .C........................... GCCGCGTTTTTCGCTTTCCGCCCCCACTCGTC 822426 29 96.6 32 .C........................... GAAAAAAATATAACGAAATCGCCACCAACATG 822365 29 96.6 32 .C........................... TTCCGTTTGGATCAGACGTTGTAACGACAAGG 822304 29 96.6 32 .C........................... TGCCTGATTGATTTCAGCGTTGCGGGCCTCAA 822243 29 96.6 32 .C........................... GAAGGTTTATATGTCGGCCCGTTTATCCTTCC 822182 29 100.0 32 ............................. GTGAAGCTGGTTTCACCGTCCCTGGGGTCGTG 822121 29 100.0 32 ............................. TTCGCCAGGATCACGCCCCGCCACTACCACAA 822060 29 100.0 32 ............................. CGCAGCGCGCCGGACGATTACCGCTCGGCCAC 821999 29 100.0 32 ............................. ACGCGCCAGTTTTGTTCGCACTGCCTGCGCTG 821938 29 100.0 32 ............................. GCGGACAATCAGCGTTCCGGCATCGAATGCGG 821877 29 100.0 32 ............................. CGCAATACGGTCGGCTGAATATCCTGTTTAAT 821816 29 100.0 32 ............................. GCCGCGCCGTATTAACGTACCTGCAATGATTC 821755 29 100.0 32 ............................. TAGGCGTTTCAATTGGCATTTTTCTCACCCTC 821694 29 100.0 32 ............................. CCGCCGCAGCCGCCGCACAATCAGCTGCTGCC 821633 29 100.0 32 ............................. GGAGGATGTGGATCTGAAGGCGGGTACGGTAA 821572 29 100.0 33 ............................. CCGCAGAGAAGCGCAATGCGGAGATTGAGAGGC 821510 29 100.0 9 ............................. CGCGAGCGG Deletion [821473] 821472 29 79.3 32 GGA.AAA...................... CGCGAGCTTTTCCGCCCACATCGCGTTAAGTG 821411 29 100.0 32 ............................. CAGGCCGCGCGCCTGGCGCAGATGGAGCGCCA 821350 29 96.6 0 ......................C...... | ========== ====== ====== ====== ============================= ================================= ================== 21 29 97.9 31 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGTCGGCCTGCCGTGCTTGGCGATCTGCTGACTGTGACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGATCTTAAGCCAGGTCATTACGCTGGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAATGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATACCAATCAGTACAGAGGGTTACCGTTAGT # Right flank : AACGCTGAACTGGCGAACACGCTGCAAAATCTCCGTTCCCCGCCAGCCGTAATAAACCGCTCAGGCTCTTCGCGCCTGTCACTCGCCGCCCCCTTTCCCGCCACATTCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTTTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCACGCCGGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : CCGTTCCCCGCGCGAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1010953-1011104 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRKW01000002.1 Cronobacter sakazakii strain cro780B3-2 contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ==================================== ================== 1010953 27 100.0 35 ........................... ACCAGACCTAATGACAAGAATCGACAACTTCAGCT 1011015 27 100.0 36 ........................... GTCAGTCCCGACGACAAAAAGCTGCAACGTCAGCCA 1011078 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ==================================== ================== 3 27 100.0 36 TGTAGGGTGGGTAAGCGGAGCGCACCC # Left flank : GAAATCATCTGCCTGATTCGCTCGCTTATCGATAGCGGTAAAGATTACGTGGTGAGCATGCTGGAATCGCTCGGCGCGCTGGCAGGCGCGAAAACCGTGGCCAAAGGCAGCTACCCTGGCTGGCAGCCGGACGCCAGCTCGCCGGTGATGGCGCTGGTGCGTGAAACCTATCAGCGTCTGTTTAACAAGACGCCGAATATCCAGGTGATCCACGCGGGTCTGGAGTGCGGGCTGTTCAAGAAACCGTACCCGCAGATGGATATGGTCTCCATCGGGCCGACCATTACCGGGCCGCATTCGCCGGATGAGCAGGTGCATATTGAAAGCGTGGGCCACTACTGGACGCTGCTGACCGAGCTGCTGAAAGCGATCCCGGCGAAGTAAGCGTTTGATGTAAAAGGAAGGCGGCCACGGGGCCGCCTTTTTTGTTTTGGCAGGGCGGGTTTAAAAGGCGGGTGCGCTACGCTTACCCGCCCTACGCTTCCCGACGGCTATCATCA # Right flank : CACCGGGCCCGAGGAAAAGCCCCTACAACCCCAGCACCAGCTGCCGCTCGATTTGCGGGTCAAGCAACGTCACGTGCAGCCCCACCAGCCGCACGCCGCGCCCGCTGCGGCGCTCTTCCCAGGTTTTACGCGCCGTGGCGAGCAAATCCTCTTTATTGAGCTTCGGCCAGACATGCTCCTGCGTGGTGAGCTGGAAATCGTTAAATTTGAGCTTCACGCCCTGGCGGGCGATGCGTAGATCCGGCTGAACGGCGGCGAGGCGGCGCTCAAGCTCCGGGTAGAGCCGCTCCACTATCGCCTCACACTCCGCCCATTCGTGGATATCCTCTGCCAGCGTGCGCTCAACGCCGACCGATTTACGCTGCCTGTCGCTGCTGATTTCACGGTCGTCTATCCCCTGGCTGCGCTCCCACAACACGCGTCCGAACTTGCCAAAGCGTTTGAGCAGCGCGGCGAGATCGCTTTTTTGCACATCCTCGCAGGTACGCAGGCCGAGGCTC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTAGGGTGGGTAAGCGGAGCGCACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //