Array 1 82268-81990 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE993167.1 Bacteroides pyogenes F0041 Scaffold862, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 82267 47 100.0 30 ............................................... AAGAACAAGCACTTGTCCTTTCTTACCTGG 82190 47 100.0 30 ............................................... CGTCTGTTTCCCCTACTCGTTGTTGTCCCT 82113 47 100.0 30 ............................................... GGCAAACTGTTAGGGTTGTCGACGCCGGTA 82036 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 4 47 100.0 30 GCTGTACTCAATGGCTCAAAGATACTAAATTGAAAGTAAATCACAGC # Left flank : GCATCGTTATATAAATGTTTTTCTGGAGCACTGCGTCGTATAAGCTATCCGGAGCGTTGATGGATCGTTTTAGTGAATATCGGGTTATGTGGGTTCTTGTTCTTTTTGATCTACCAACGGAAACTAAGAAAGACAAAAAGGCATATGCAGATTTTAGGAAGAATTTGCAGAAAGACGGTTTTACTATGTTTCAATTCTCAATTTATATACGACATTGTGCCAGTAGTGAGAACGCAGCTGTACATATAAAAAGAGTTAAATCTTTCTTGCCTGAATATGGACAGGTTGGGATTATGTGTATAACAGATAAGCAGTTTGGAGACATTGAACTTTTTTATGGAAAGAAAATTCAAACCACTAATGCACCAGGTCAACAATTAGAATTATTTTAAAATAAAAAATCCCGTACTAACACGGGATTTTTTATTGTTAATGAGTAGGTTTTTCTTATTCTAATAGTCTTGTTAATTTGTTGATTATTAGTTCTCTACTCTGATTCA # Right flank : TGTGGGAATAGGTTTTTATTGCCGAACGTAGCTGTACTCAATGGCTCAAAGATACTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGATACTAAATTGAAAGTAAATCACAGCCAAAAGGTCAGAACTTAGAATCAAGCGGAGCTGTACTCAATGGCTCAAAGATACTAAATTGAAAGTAAATCACAGCATTTTGGAAAGGCTGGTCACAAGTAAGAAGCTGTACTCAATGGCTCAAAGATACTAAATTGAAAGTAAATCACAGCACAAGGTTGGTCTTATGTCTGGAAAGAGATAGCTGTACTCAATGGCTCAAAGATACTAAATTGAAAGTAAATCACAGCCGTCGGCGGCAAAGTAATACTATAACTATGCTGTACTCAATGGCTCAAAGATACTAANNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTACTCAATGGCTCAAAGATACTAAATTGAAAGTAAATCACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.70,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 2970-2745 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE993111.1 Bacteroides pyogenes F0041 Scaffold43, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 2969 30 100.0 34 .............................. TTCTCATTCATTGTCATCATGGCTCCGATCGCAC 2905 30 100.0 35 .............................. CTCGATATTGCTGATTTTCTTATTAGCAGCCCCGT 2840 30 93.3 36 ...............C.......T...... TCAGATTCATTATAAACTCTAACTGATTGTACGTCC 2774 30 80.0 0 .........C.G...C.......T..G.C. | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 93.3 35 GTTTGACAGGAACTTTGCTTGGTGTTAATG # Left flank : TTGTTTATCTGTGAGAGGCCTGCTCTGTCGGGTTTCAAACATCCCGCCATTTCATCATCACCTCCCAGTCGTCGGGCTGGCGATTGCCTTTTTCGTTGGCGGGAACAGTGCCTACCACCACATTGCGACGCTCTGCCAGCGCTTTGCGCATCTGCCGCACCAGCACGGGCATAAGCAGGGTGATCTGAACGGTTTCCGCCATCAGGCGAATGATACGGATGTATTGACTGATGTACAGGTCGTCTCCTTTCTTCGCCGCACTCACGGTAGCTTTGCGGATATGAAGCTCGCCTGCCAGATAGTTATACGTAATCAGGCGGTCGGCGTTCATGAAAGCCACCACCAGTTTCGAAATCGAATCGTAGCGAAAAAGTTTCATTGTTTATGTGTGTTTGTTCGAAATATATGTGTAAAAATACGACAAGTTTTCGAAACTTACAAGCACGTCGGATGATTTTTTATGCAATTCATACTTATTTTTCAATACAAGCTTCGATCGG # Right flank : GAATTCACCCTTTTTCTGCACAAAAACCTCCCCGAAAAAGCCCCTCCCATAATAAAAAAATAAATAAAAACAGTTCCACACGCCGGAACTGTTTTTAAAAACCGCCGACTTATATTTGCCGCCGGAAAACGGGAAACGCCCTGCCCGCAGGCAAATGCGGGGAAGGGCGGACTCCCGTGAGGAATAAATTATTTAACCTTATTATTTAAAAAATCATCGTATTATGAAAACTATTGATGAGATTTTCGTTTCCGTATACGGAAGCGTGTATTCCCGCGAACCGCGGACGAGCTCTTTCCAGCAAGTGATGAGCGACTGTATCCAACCCGTACATGCTTCGGCTGTGGAAACCATCCGGAGGTATCACGCCGAAGGCGACAACGAAGCGGCGCAACGGCTCAAGCGCGCCCTGCCCTGCTTCACGCCCGCCGGCACGTTCGAGGGGGCGCATGCCGTCCGAAACTTCCGCAAGCCCAGCCACATCGTGGGACTCGACTACG # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGACAGGAACTTTGCTTGGTGTTAATG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 246526-246890 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE993153.1 Bacteroides pyogenes F0041 Scaffold769, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 246526 36 100.0 30 .................................... TAAGAAAAAACATGAAAACAAGGAAAAGAC 246592 36 100.0 29 .................................... TACTCATTACTATACTACTTTATCATTCA 246657 36 100.0 30 .................................... CATACATTGCTATCACATTCTTCTGCCCCA 246723 36 100.0 30 .................................... ACGCTGATCCATAGACTGAACATAAACAAG 246789 36 100.0 30 .................................... TTGAAAGAGGAGTAGGAAGCTCCCCAAACT 246855 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 30 GTTGTGGATGCCACTAGTTTGAGTGGTATAGACAAC # Left flank : CGTATCTAAGTTGATGCGTTATTGTTACGATGGGCGGGTAAAGGGATTGATGCCTTATTTTGCTAACCATGAAGCAACACAAGAGCAAGTGGAGATGGAATTGCGTCATTACGAAGATCATCGCAGGCGTGTATTTAATTGGGTCTTTGCTTTGGAAAAATCCGTATTGAAGAATGAAAAGTTGAGAAGGTTCTATGAAGAATCTCAGGGAGGATGTGAGCATCGCAGATGCATAGATGCGTTGAGAAAGGCATCACTCGTTTCGGAAGAAGAATATGAGTTTCTTGTCCATATTCGTAATAAGTCTGCTCATAATCAATTCCCTGACTTGGAAATTGGGAAGCTGCCCCCGAACGTTACATCTGGTTTTTGCGAATGTATATGGAGTAAATATAAAGCAATAATTTGTCGAATCATTCCTTTTATAGATCCCGAAAGAAGATTTTTTGGGAAACTTTTGGAGCAGAAATAATTAACCAGTAATAGGTTAGGAAAGTTTT # Right flank : CTAGGGTTCTTATTATGGAAATTCACAATAAGTTGTGGATGCCACTAGTTTGAGTGGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCACTAGTTTGAGTGGTATAGACAACCATTCTTCAAGTGTTCGAGGGTAAGCAGGTGTTGTGGATGCCACTAGTTTGAGTGGTATAGACAACGGGTGAAGTGTACTCGTTTCATCTTATTTTGTTGTGGATGCCACTAGTTTGAGTGGTATAGACAACAAGAATAGCATTTTTAATATTTTCTCCAAAGTTGTGGATGCCACTAGTTTGAGTGGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGCCACTAGTTTGAGTGGTATAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGATGCCACTAGTTTGAGTGGTATAGACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.00,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //