Array 1 25708-24418 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQHV01000019.1 Neisseria meningitidis strain M22162 M22162_HUY1102A60_cleaned_ctg_34552, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 25707 36 94.4 30 ........G...A....................... GCGGAACGGGTTGACAGACTGAATTTGAGT 25641 36 97.2 30 ............A....................... ATCACTTTTAAAGGCGGCATCGGCTGGTTT 25575 36 100.0 30 .................................... AGGGGTCGTGAATGGAGTTCTTGCAGTTCG 25509 36 100.0 30 .................................... TAAGCGTTTCTTTTTTGGTCTGCTTCTGCT 25443 36 100.0 30 .................................... AATCAGACCGACTTTACAACGAAGGTTTGA 25377 36 100.0 30 .................................... TGCTACCAGCGACAACAGGCATTACGCCCA 25311 36 100.0 30 .................................... TGAGAAAGATTTAAGAACTAAGTTCCCATC 25245 36 100.0 30 .................................... TCAGCCTCAAATACATCCGCCAAATCGTTG 25179 36 100.0 30 .................................... ACACAATCTCCGCCGTTCCAATCAAATGTG 25113 36 100.0 30 .................................... CTGATGAAGATACAACCGCACTAACTTTAC 25047 36 100.0 30 .................................... CTCTTCATTGAAGAAGTTATAAGCCTTTGT 24981 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 24915 36 100.0 30 .................................... GCCTGCGTACTTGGTACGCTGGTCGCCTCC 24849 36 100.0 30 .................................... TTCATAGATCGATGCATGAGGTTTTCATGG 24783 36 100.0 30 .................................... AGGTCAAAGTGTCAGGCAAATTTAAAGGTG 24717 36 100.0 30 .................................... AAATCCATTTATCGCCCACCCTTTCCGGCC 24651 36 100.0 30 .................................... TGCTGAAATTATGGCAAGTATGGGGCAAAG 24585 36 100.0 30 .................................... TAGCAAACAAGGAATATTCAAAGTCCTTTA 24519 36 100.0 30 .................................... CGTCTGCTTTGGAACTGAAGCAAGGCGACA 24453 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 99.6 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACAAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //