Array 1 140-2122 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNUS010000025.1 Lactobacillus delbrueckii subsp. lactis strain FAM 22091 FAM22091-i2-1_scf25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================== ================== 140 28 100.0 33 ............................ TGGTTAAAAAATACGTAGCTAAAGAAATCGGTG 201 28 100.0 33 ............................ TGTACTGGGCTTCTTACCGCCTTAGCGTGGAGA 262 28 100.0 33 ............................ TCGAGACAGTAAAAAACAGGAGGTAAAAAATGG 323 28 100.0 33 ............................ TTAGAGGATGTCGATCGGTATGGTCAAGATGAG 384 28 100.0 33 ............................ TAAGCAGTTGTATCTCTTCACTAGGGAAGCAAC 445 28 100.0 33 ............................ ATGAAGACGCAATCGAAGGTGCTTTGACCTTTG 506 28 100.0 33 ............................ ACTGCATCCATAAAGGCTAGGATCGCCTTGGTA 567 28 100.0 36 ............................ CGTACCTCAGCTACAAACCACTCCGGCGCCGGCCAA 631 28 100.0 33 ............................ TCGATCGTTTTGTTGAGTTTCTACCTATTATAT 692 28 100.0 33 ............................ TACCTCTTTCACTCTTTACGCTTCTTCCCAGTG 753 28 100.0 33 ............................ TCTATAGCATAGTCCCAGCCGGGAAAAAGTTCC 814 28 100.0 33 ............................ CTCATCTGCAGTCAAGGTGCCTACAACGACATA 875 28 100.0 33 ............................ CTCATCTGCAGTCAAGGTGCCTACAACGACATA 936 28 100.0 33 ............................ TTTCCACGCTAAGGCGGTAAGAAGCCCAATACA 997 28 100.0 33 ............................ TTAAGCGAGTTCGGATTAGTGAAAATGATCGAT 1058 28 100.0 33 ............................ CCACCTCTTTACTCACGCGTATCACTTCGCCCG 1119 28 100.0 33 ............................ TAATTGCGGTGGGTTAGCAAGTGAGCACTGCCG 1180 28 100.0 33 ............................ TTTCGCAACCAGTTCAAAGGTATATCTTGAAAG 1241 28 100.0 33 ............................ TGAAGTAGGCTGCATGGGCCATTCTCGTCAGCG 1302 28 100.0 33 ............................ TAAGCAGCTCAAAAAACCACTAGATTTAATCTA 1363 28 100.0 33 ............................ CACTGCTTCTTCCTTGGTCAAAGAGTGGAAAGA 1424 28 100.0 33 ............................ TCGGCCCCGTCATGATCAAAGTAGTCAACGTGA 1485 28 100.0 33 ............................ TTTTGTAGCTATCGACTTGAAGACCTTGACGGA 1546 28 100.0 33 ............................ CTCTTTTTGTGTAGTATGTAAAAGTGTAACACG 1607 28 100.0 33 ............................ TAGTATCGACGGTTGGACTACGGACGACGAAAA 1668 28 100.0 33 ............................ TCCCGGACTGCTTCATCCTCAGACGTCCATAAA 1729 28 100.0 33 ............................ TGATATTTTACCGCTAGCCCTTGATCATGTCAA 1790 28 100.0 33 ............................ CTTTTTTTGAAAAATCTATAGCGCCTTGCAAAT 1851 28 100.0 33 ............................ CGATGTTCGAAAGCTATTGTAGTGATCTGCTTG 1912 28 100.0 33 ............................ CGACTGAGCTATATGATGAGTACAGCTCAGACT 1973 28 100.0 33 ............................ TGGTCTTGATCAAGAAAGTCAAGCTGCCACAAA 2034 28 100.0 33 ............................ TAGCTCGTCTTGAACAGCATTTAGTAAATCGCG 2095 28 85.7 0 ............T.T.......CA.... | ========== ====== ====== ====== ============================ ==================================== ================== 33 28 99.6 33 GTATTCCCCACGCAAGTGGGGGTGATCC # Left flank : ATCAAGACCGAGAGACGTAAAGGGTATGGGTATCCAGATGATGAATACTTCTTCCTGCGGTTAATGGAACTATCGCGGAAAGCTTCCTAAGTCTCTCAGTCATTTACACAAGTTTTTATACTGAACCAAAAAATAACTGG # Right flank : CGTTCTTTATGTTATTGTGCTTTTCGTACTGTGTATTTTCCATACATATGCCGCGATGATCATAAGTTTCAGTTAAAGCACAAGCAAATTTCAAGGATCTTTGGTAGAGTAGAGGTAATAGGGAAGGAGTGAGGAACAAGCGTGAGCATTTACGGAAAGTATGCCGACTATCTTCCACAGATCCTGGATTCTGTTTTGCAGCAAATCCAAGGCATCGGTCAGGAGTATAGTGCAAAACACGGGCAAAAGCTATATGGGCACCTGGAAGGTCGCGTCAAAGGAGAAGAAAGCATGACGCAAAAGTGCGAGAGAAAAGGTATGCCGCTGACGCCAGAGTCTGCATTGATCGAAAATCGAGATGCGATCGGCCTCAGAATCGTCTGCAACTTTATTGACGATATCTACACTTGCATTGACTTGTTGAAGAAGCAGGACAACTTCAAGATCATTAATGAAAAAGACTACATTACCGATGCCAAGCCAAACGGCTACCGGTCATA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCAAGTGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCAAGTGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.30,-10.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1894-157 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNUS010000129.1 Lactobacillus delbrueckii subsp. lactis strain FAM 22091 FAM22091-i2-1_scf129, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1893 28 100.0 33 ............................ AGCGCGGGTCTGCGCCTGTCGAATCCCAAAACA 1832 28 100.0 33 ............................ TGAGTTGGCGATCGCATCAAAAACAACTGCGGT 1771 28 100.0 33 ............................ CTGAAATACAGCTGAGTGCCTTTGATGATGGTG 1710 28 100.0 33 ............................ TGCCGGTGCTGTCGGCTTCCAGGTTTGGTCTGG 1649 28 100.0 33 ............................ CTTTCCGTAAGTCTGTCGTACTGCGTGCGTTCT 1588 28 100.0 33 ............................ TAATCGAAGAACTAATAACAAAGGAGAGATAAA 1527 28 100.0 33 ............................ TTGAGCCAGTTGCCCGCTAGTAATAACGGCTTG 1466 28 100.0 33 ............................ TCAGATAGCTTCCGACTGGCAATTGAGCCAGTT 1405 28 100.0 33 ............................ TGGGCCACGAGTCGATCGATATCACAATGGAAA 1344 28 100.0 33 ............................ CGTAGATACAAGCCTTTTTTGAAGATTTTTTCG 1283 28 100.0 33 ............................ TGCTCCGAAAATATTTTTGACACTTTCACTGTG 1222 28 100.0 33 ............................ TCAGCCACCGCTTTGCTGGTCAGATCCTTTCCG 1161 28 100.0 33 ............................ CAGGTGGCCGGATGTTGAAAAATGTTAAAATTT 1100 28 100.0 33 ............................ TCGCCATGTTGAAGAGCAGGAAGGGCAGCGCTC 1039 28 100.0 33 ............................ TGAAGTAGGCTGCATGGGCCATTCTCGTCAGCG 978 28 100.0 33 ............................ TTTTTGATCGTAGGCGACATGGCTTCTTCCGAG 917 28 100.0 34 ............................ TGCTAGGCCTTTTCTACTTACCGTACCTCAGCTA 855 28 100.0 33 ............................ TGGGGTAAAAGGGTAGCTATACGGTTTCACGTG 794 28 100.0 33 ............................ TAAGACTTTGGCACGCCAAACACAGCTCTAATC 733 28 100.0 33 ............................ TATGGGTTGCAGTCGCGCTTTAAACTGGCTGAA 672 28 100.0 33 ............................ AATATTTTTTATTCGTCAAATTCTTTGACCAGA 611 28 100.0 33 ............................ TTCTAACACGGTTCGCTTCAAAGGCAAGACATT 550 28 100.0 33 ............................ TGAAGCTTATGATCTTGTCAAAGAATTTGACGA 489 28 100.0 33 ............................ TGCTTTGCTTTGCATGTCTTGCTTGCATGTCTT 428 28 100.0 33 ............................ AAAACGATATCTCTTTGATGCTCGCGTATATTA 367 28 100.0 33 ............................ TTACAAATGTAAGCGCTTCCAAAAAATACAGAG 306 28 100.0 33 ............................ TAGGTAAAAGGGTAGCTATACGGTTTCACGTGA 245 28 100.0 33 ............................ TGGTTAGATGATAAAGTCTATGAAACCGGGTTA 184 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 29 28 100.0 33 GTATTCCCCACGCAAGTGGGGGTGATCC # Left flank : CGATTACTACAACAACGTAAGAATCAAGACAGGACGAAAAAACATGACCCCGATTGAATATCGGAATCATGTTTTAACAACCTTAACGGCGTAATACTAAATTGTCCCAATTTTGGGGGTCACATCACTATAAGCTACAGACTGTATTATCAAACTACGGGATCGAAAACAAGGTGCCGCATAATGCTGTGTCTGACGCAAGGGCTACGAAGGAGCTGGCGATGAAACTAATCAAAAATCGCATTTTGGTGATTTGAGAATGGCGTCGCTAAAGGGATCCATTAC # Right flank : CTGGATTTGAAAGAAATTTTGAAAAAAATAGGTTCAGTATAAATTCTTGTGTAAATAGAAAATAGGCAACAAAAAAAGAAGGGTTGTCCCTTACAATGTTAATAACGACAAAAACACAGGAGCCCTTCTTACTATGCTTTACACAGAACTGTCAGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCAAGTGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCAAGTGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //