Array 1 1059821-1060268 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP078017.1 Alcaligenes aquatilis strain 393 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	============================	================================	==================
   1059821	    28	 100.0	    32	............................	AGCGAGATGAGTCGACATCGAAAACGCCAAAG	
   1059881	    28	 100.0	    32	............................	ATACTCGCCGTGGTAGTACCCACAGACACAAC	
   1059941	    28	 100.0	    32	............................	CAGGACTGTTTCTTTCGAGGTTCAGCAATGAC	
   1060001	    28	 100.0	    32	............................	GTAATCATCAAGATGACAGCGCCGCCAAACAA	
   1060061	    28	 100.0	    32	............................	TCAATACGCAGCAGATTCAGACGCGGCTTAGA	
   1060121	    28	 100.0	    32	............................	ACGCCAATCGACCGCCGCACCCCAATGGACAA	
   1060181	    28	  92.9	    31	....................T.C.....	AGTATGGGCTGTGCTTTTTGCTAGGCGTTAA 	G [1060207]
   1060241	    28	  67.9	     0	..G..GC..GTC...A....T.G.....	|                               	
==========	======	======	======	============================	================================	==================
         8	    28	  95.1	    32	GTTTGCTGCCGAGTAGGCAGCTTAGAAA	                                	       

# Left flank :   CACACTTAAATCGGGATGCCGCAGGGCGGCTTGGACATCGCCGTGCCTGTGGACCAGCCACGCCCCACCACAGAAATCCGCATCCCACACCAAAGGTGGCCCCTGGCGAAGGCGGGCATAAGCCGGATAGGGAGACGCAAGATTGAAATCGCCAAACATGACACTGTTTCCTGAAGATCAAAGCCAGCGCAGGCTAGCACTTGAGCCGGGAAGAGGCAGTCAGGAGATTGTGTCTATTAATTCTTTCAGGGTGTTTTGAGCTAATTAATAATTTATTTGCCGTTTATGGCTACTGTTAGCGGTTTTTGTGTGACTGTTTTTTACAATAAACTTGATGAGCGAATTCGAGGTGATGGTCTTTTCTTTGCAGAAACCCTTTTTTCTATGATTTAAAATTTTGTTTAAAATCAGATGCTTATGGGGTGGTGTGAAAAAAGGGTTTTAGTCACAAAAAAAGCCATAAGATAGAGCCTGATTGGCGTTCAGGGATGAATGCTCTA
# Right flank :  AAGCTTCTGGGTTTGTATCGTGCGCAGATAAGGTTTGCTGCGATAGAGGCCGCTGAAAAGGCTTAAATTTCGGATGCCCAGCTAGCTTTTTGTCGTAGGCCATCGCCTATCCAGTGGCAAGGCCAGTGCTGGTAGCGGCCCTGCAGCAATGGCAGGCTAGGACTACCGCCCTAGTCTGCTATTTATTCCAACTAATCACCGGGCATCAGATGCTGCTGGCAGTCCATCAGTACTCAGTTTTTCGGTTTTACGCTGTGGCAACTTCCCATTCAAAATAAAGTACGCCAGCAGACCGATCACCAGTCCCCAGAAGGCCCCGCCGATGCCAAATAGTGTGATGTTGGCGGCTGAGGCCAGGAAGGTGATTAACGCTGCTTCACGCGATTTGACGTCCGCCATGGCGCCGGCCAGGCTGCCACCAATGGTTCCCAGTAGCGCCAAGCCCGCCAGGGTGGTGATGAAGGTTGCGGGGAAGGCCATGAACACGGCGGCCAGCGTCA

# Questionable array : NO	 Score: 6.01
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTGCTGCCGAGTAGGCAGCTTAGAAA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [7,7] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-8.00,-7.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-12] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.55,0   Confidence: HIGH] 

# Array family : I-F [Matched known repeat from this family],   
//