Array 1 5523609-5524356 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP041773.1 Pseudomonas aeruginosa strain 519119 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 5523609 28 100.0 32 ............................ AGGGTCAGGTCGTCGGCGTGGGTCGGCACCCA 5523669 28 100.0 32 ............................ TGGATGATTGGCCAGACCGACAAGGGGAGCAA 5523729 28 100.0 32 ............................ AGTGCCGGGCGGCTCCGGTTCAAGCAGACGGC 5523789 28 100.0 32 ............................ TTCTCCGGGCGCGCCCTGGTGCCATCGTTACC 5523849 28 100.0 32 ............................ ATGTGTGATTTCACCTCGCCATCACGTGTGAT 5523909 28 100.0 32 ............................ TGGGTCAAGACCCACATGCCCGAACACAGGGG 5523969 28 100.0 32 ............................ GAGTGCCAGCGTCGGATAAGCGCCTGGATCAA 5524029 28 100.0 32 ............................ TCCCGCGGATACATGATCTGGTGGTGTCGCTC 5524089 28 100.0 32 ............................ AAGAGGCTCACATCGCTCATAGCGTCCTGGGC 5524149 28 100.0 32 ............................ AGAAGGCCGGGGTCCGTGTGTGGCGCATTGAC 5524209 28 100.0 32 ............................ TTACCTTTAAAAGGCTTTAAAAGGCCTTTTAG 5524269 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 5524329 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 13 28 97.5 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAGCCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATTGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGACGGGGTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 5534831-5532882 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP041773.1 Pseudomonas aeruginosa strain 519119 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5534830 28 100.0 32 ............................ ATCGACGCCGCCCTGGGCCGCCTGGTCGAGCC 5534770 28 100.0 32 ............................ AGCGTGAACGCCGGGATGTGCAGCATGTTTGT 5534710 28 100.0 32 ............................ TTCAAGAATTCGGATCACATCCCGGCGCTTTT 5534650 28 100.0 32 ............................ TGGCGGGCCATCTGGGACGGCCGGGTCTACAA 5534590 28 100.0 32 ............................ TCGATGGAAGCAGGAAGTCCAACGCAGCCGGT 5534530 28 100.0 33 ............................ TTCGGAATAAAGACGGCGCGCATCGAGCACTAC 5534469 28 100.0 32 ............................ GGTGATGGCTATGCCACACACGTGGATTTCAG 5534409 28 100.0 32 ............................ AGGTACAGGTACTGCTCATCCGCTGCGTACAG 5534349 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 5534289 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 5534229 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 5534169 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 5534109 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 5534049 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 5533989 28 100.0 32 ............................ ATCACGTGTGATTTTCGATGAACGTGATTTTT 5533929 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 5533869 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 5533809 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 5533749 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 5533689 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 5533629 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 5533569 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 5533509 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 5533449 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 5533389 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 5533329 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 5533269 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 5533209 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 5533149 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 5533089 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 5533029 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 5532969 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 5532909 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================= ================== 33 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //