Array 1 24691-23926 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPSD01000014.1 Sulfolobus acidocaldarius strain NG05B_C06_07 NG05B_C06_07_scaffold10_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ================================================================================== ================== 24690 25 100.0 82 ......................... NGCATTAAAGTTCCCCATAAAACACCTAAAATTTAAATACAAGGAAAGGGAAAAATAAGACAAGGGATATAAAAACAAACCA 24583 25 100.0 39 ......................... CTCTGTTCACAGAAATATTTGTCAAGCTCAATCTTAAAG 24519 25 100.0 42 ......................... AGTTTTGGGAACACTTCTCTTCCCTTTATCTGTTAGTTCATA 24452 25 100.0 39 ......................... CTCAAATCGTTTGCGTACTGTTTAAAGCTTTTTAAACTC 24388 25 100.0 37 ......................... AGCACCCTATTTTCAGGTGCTGGCTGACTAGAACTTT 24326 25 100.0 38 ......................... GGGTATAAATAAAGTATGCCAGCCTGTGCTAATGACAG 24263 25 100.0 36 ......................... AGTTTATTATGTCATTGGACAGCAAGTCATACGAGA 24202 25 100.0 41 ......................... TTTTCTCCTTTTTTCATAATACTTCTTTCCATATTTCCGCA 24136 25 100.0 37 ......................... GCTCTGCTAACATTAGCCTCTTCTCCTGCTAGAGCTA 24074 25 100.0 38 ......................... ATCTTGTCGCTTATGTGAACGTCTAGGGAGTCGATAAT 24011 25 100.0 36 ......................... CCAAACCAAGTTAGGTTTTATGTTGAAGGGGACTCT 23950 25 96.0 0 ..............A.......... | ========== ====== ====== ====== ========================= ================================================================================== ================== 12 25 99.7 42 GATGAATCCCAAAAGGGATTGAAAG # Left flank : TCTGTGTGTCGTGGTTAACTCTAGGTATTGAGTAATATTCTAGTTGATTTTCTGTATTTTTGACGGAATAAAAAATTTTTAATATATAGGGCTAAAATTTTAACGTAAACAAGGGGATTTAAAAAGCTGTTTATATGTTTTTTCTATATCCTTATTTTAAAAAATTTTCTAAGTACACCATTTAAGAATGAAAATAAGTTAAGGTGACCATACTAAGAGAAAACCTTAAACTGGGAAAGTAACTACTCTTTTCTTCGATCTTTTCATGAAGTTTATAAATGTTGTTTTTCGAGTCTCAATGCGACCCATCCCAACTTAGTTACAACCCCTCAACATTTATAAATACACAACCATCTTTCAACTCTAGTTAAGCACCATGCGACCAAAAAACCTAAACACAATTACTAGGACTTAAGGTCGCATTAAAGTTCCCCATAAAACACCTAAAATTTAAATACAAGGAAAGGGAAAAATAAGACAAGGGATATAAAAACAAACCA # Right flank : ACGGCAATTATGGTTATATCATAATGATAATGCTAAGTCGAGCGTATTAGACTAGTTATATCTAAGGGATGCGCTTTACTCACAGGTAGTATAGGAGTAGTGTAGACTTGGAGGAGGAATAACGCCATTTATTAGCTCTACCTCCACAATAGTTTAATGCAGCAATAATGTCGTCTCTGGACAATCAATATAGATCTAGAATTGCTAGGAAGGGGTGCGTTTTCGTAAGCTATACTTCTCCTCACACGCACGTTAGTGTCTGTACTGAATTACAAGAAGATCTTCTACTTTAACGGCACAACACAGAGCTCTAAGCGATAAAAAAATTAATAATGAAATAAATATAAAATTAAGTATGAAAGATGGGAAAAAGATAGCATTCGTTAAGGACCACGGGGCTCACCTGAGGGTCAACAAGGGAATGATAGAGTGCTCAGTTAAAGATGAGGTCAAGTGGTCTGTGTCTCCTTCAGAGTTGTCCTCGATCGTCGTGATCTCAA # Questionable array : NO Score: 8.91 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.33, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGAATCCCAAAAGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: R [matched GATTAATCCCAAAAGGAATTGAAAG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 52340-52061 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPSD01000013.1 Sulfolobus acidocaldarius strain NG05B_C06_07 NG05B_C06_07_scaffold9_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ======================================== ================== 52339 26 96.2 36 .........................C ATATCATCATCTCTCATCATCTGCCTGCAACGTATC 52277 26 100.0 35 .......................... CACATTCATCCCTATAGACATTTATTGAAAACGAG 52216 26 100.0 40 .......................... TTGCTTTAACATAGATCGGTGAAAGCATCTCAAAAGGTAG 52150 26 100.0 38 .......................... AAGTATATATCATTTGAATGAATGTTGAGAGCCACATT 52086 26 73.1 0 T..A.G.........AA......G.C | ========== ====== ====== ====== ========================== ======================================== ================== 5 26 93.9 38 GAAGAATCCCATAAGGGATTGAAAGT # Left flank : TGCCGATTCCCCTCTTGTTTTGGTACATCGAGGGAAATTTTCATGTAGGAGAGATTAAGTTTCCTTCTAAATACTTTTCAGTAATAGAGGTTGTTTAATTTTAGATAAAAGAAGGGAATTTATAAATTTATTTATAAACACTACTATGAACGTCTTTTGAAAAATTATACTATGAGCAAAGAAAATTATGAAAAACTTTTCAAGGTGACCTTACGATTTAAGTAGTTAATACTAGGTGTAATCTTACCATAATTTTCGATTTCGTCATAAGGTTTATAAACGTCATTTTTCGAGTCTCAATGCAACCTATCCCAACTTAGTCACAACCCCTTAACATTTATAAATGCACAACCATCTTTCAACTCTAGTTAAGCACTATGCGACCAAAAGACCTAAACATAATTACTAGGATTCAAGGTCGCATGATTAAGTTAGGGGCTTAAGCAAAAGTTTATTAACAAGAACGTCAAATTTAGGATAAGGGAATAATAAATACATCA # Right flank : CGTATTCATTTTTATATAGAACTTTAATTATTGAGTAGAAGAGGTCAGTAATGAACATTTTAACTATTTACTTTCCCATTTCTCTACGGAGAAGTTCATTAAGAACTTTGATGATAAGAAAAGGACTCTATTATAATGAAGTAAAAAGTGTTTAAGTCAAGCAAGTGAAGCATAGGTACTAAGAGAGTCCTTTAAAATTTTATAGGGTATATCCCCATGAAGTATCTACTTATCATATTCGATAACGTAATCGAGAGGCGTGTTAAGGGCGTATAAGTTATGCAGGATTGAAATACGCTCAATTCTTGCATCATGTATAGGCTATAACAGAGAGCTGGTCATGAAGAGTTTTAAGAGAAACTCTTTCTTTAGATAGAGAATCACTTTAGGAGCCCTCATACCCTTTTATCTAGTTGAGACATAGGAAGAAACTAGTGAAGATAAGTGTAGATATTTTTCTAAGTCAAGTAACCTCGCAAGATGCCGTGATCTTTAGGTTT # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGAATCCCATAAGGGATTGAAAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.54%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 1 2781-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPSD01000012.1 Sulfolobus acidocaldarius strain NG05B_C06_07 NG05B_C06_07_scaffold9_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================= ================== 2780 24 100.0 36 ........................ TAAATTAGATATACGTACATGGGATTCACTAAGAAA 2720 24 100.0 36 ........................ CGATTGTTGTGATTGTTGTTCTTGCTTTTTAGCGTC 2660 24 100.0 37 ........................ CAACATAAGGACCTGGAGTGATCACGGGGAGCCCAGT 2599 24 100.0 36 ........................ GGGAGGGAGTTACAGTAATAATATCTACGGAACGGT 2539 24 100.0 36 ........................ CTTTCAATTGATGCTGGTGATGCTTGAGCTAAAATG 2479 24 100.0 35 ........................ TAGTACTATCTTTATATTCCTATATTTTCCTCCTA 2420 24 100.0 35 ........................ TAGTACTATCTTTATATTCCTATATTTTCCTCCTA 2361 24 100.0 37 ........................ AAGGCTTCCTCTTCTTGCTGGGTAAGCCTGGGGAGTA 2300 24 100.0 39 ........................ TTTTAGGGCTACTATGGTGATAGCTACTGAAAATAAAAA 2237 24 100.0 37 ........................ AAGGAATTAAAGAAGTTAGGACTTCAGGACAATGTAG 2176 24 100.0 35 ........................ GCTTTAAGGTCGAAATCAGAGATAATGAGCATAAT 2117 24 100.0 35 ........................ AAAAATGTGCTCATCTATGTTTCACCCTGTTGCAC 2058 24 100.0 36 ........................ AGAGTTTGTTCTTAATTGGCCAGCAGACTAATTTTA 1998 24 100.0 36 ........................ CTTCCAGTCTTCATTTCTGGCTCACCCCCAGTCAGC 1938 24 100.0 38 ........................ ATACTTAATCCCTGCAATCGCAGGTTCAATGGTTCAAG 1876 24 100.0 35 ........................ AGCACGTAACGAAGCTCTATAACTACTACGTAAAG 1817 24 100.0 35 ........................ GTTGACGAGGGCTGGCTCTTTGTGAACTACCCTAT 1758 24 95.8 35 ............C........... TGAAAAACCCTATATTTCACGAGACAAATGAAGAG 1699 24 100.0 34 ........................ GAATTGTGCTGATGCCGAATTATCAGGATCCCAT 1641 24 95.8 35 ............C........... AAGTCGCAATAGCTAATTCGACTAAACTAATCGCT 1582 24 100.0 35 ........................ GCCATCGAGATTATAGCACCCATCAGAATAATTAC 1523 24 95.8 37 ................A....... GAGAAACCCCTCTAACCTTTTTAAGAAGTCCTTTACA 1462 24 95.8 37 ................A....... TCAATTCTTCGTAATGCTCGGGTTTTATGATTATTTT 1401 24 100.0 34 ........................ AGTAACTATATACTTCCTAACGGAACAACTGTAA 1343 24 100.0 35 ........................ ACCAGTCTTATCTACATATTTTCAAAAGTAATAGT 1284 24 100.0 36 ........................ AGATGAGCATGGCGTAGTATCCATAAGTGCTGATGT 1224 24 100.0 35 ........................ ACAACGAAAAAGAAAAAGCATTGAAAATAATTGAG 1165 24 100.0 34 ........................ ATTTATATACATACACTCCATTTTCCTTAAATTT 1107 24 100.0 33 ........................ TGCTGTTCATCAGGCTCAGTATAGTACCTGCAT 1050 24 100.0 35 ........................ GTGTGTCTTACCACTCATAAAGCTCTCCCACATAC 991 24 100.0 39 ........................ ATTGATACGATTCTTGCTGAGGCGAGAAAGTATTCTCTT 928 24 100.0 35 ........................ ATAATTTCAATCCTGAAAAACAGCTGTTCTACTTC 869 24 100.0 37 ........................ CTCTACTATTGCTGATACTGATTTGCCTTCATCCCTC 808 24 100.0 35 ........................ ACTATCTTCTTCTGAGTAGTAGTGGTCGTAACGTT 749 24 100.0 36 ........................ TTTTTGACAGCATTCGATAGAGGTTAAAGGTTTTTT 689 24 100.0 36 ........................ TGGTTGTTTGGTGAAAACCTCTAGGGGGACACATTC 629 24 100.0 34 ........................ AAAAGCTTTAGCTTTTTCAACTATCTAAGACATA 571 24 100.0 35 ........................ TTCAATTTGTTTTCCTGAAAAAATTAGTTGTAAAG 512 24 95.8 36 T....................... ATCGTCACCACCCACGAGGGCTTTTACGAATACGAG 452 24 100.0 38 ........................ ACATACTAATAGTCTTACTCAGCATGAGGTTGATGAAC 390 24 100.0 36 ........................ TTCTTGCTTGCTATAGCGTTAAGCAAGTAGAAGTGC 330 24 100.0 37 ........................ TTGGATATAGAATTGTCTCATAAAGACATTGAGACTG 269 24 100.0 34 ........................ TCCATAAAAGGCTTTGGACAAAAACTCTTTGGTG 211 24 100.0 37 ........................ GACTTCATATAAAGATTTGAGTTGCTGTTGCTCATAT 150 24 100.0 39 ........................ TTTAAGCCAAATTTCTTCTCAATGTCCTTTGGAATTAAT 87 24 100.0 39 ........................ AAGGAAATTGATGGAAGTTGCAGCAGAATTAGAGGCTGA 24 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ======================================= ================== 47 24 99.6 36 GTTTTAGTTTCTTGTCGTTATTAC # Left flank : TCTAGACATATGATTGGAGAGGATGAATTGAGGATCTATGTATTCTAAGTTTGAATGATTCCCATGACAGTCTCGTCGGATACAATTGCAATTAAGGTTGCAACAGACATCACAGCATCTGGTGTGATACTGACTTCCTCCTCGCTCTAAAGAGTGAGGGTTACCTAGGGCAGTTCACAGGTCTGTAGTTTATCACCTTCACTTTTATCACTTCATAGCTAGTGGGCTCAGAAGCCCGCTCCGCTCCACTCTTTCAGTGGTAGACCACTGGCTGAGCCTTCAGCCACTCAACCCCTATCCCTTTGGTGGAGTTGCCCTAACTCCACGCTCCTCGAGACTCAGGGATATGTACCAGGAAAGAGGGACACACACTGACTGACCCATGCTCTTACGGGCTTCCTCTTAATAACAACTTTTCTCTCGTAAGTAGAAACCTTTACCTCGCCATAAACGGCAAGGCTTTGTCATTCTCTCATCATTCTATTTTAAATAGTTACAGT # Right flank : C # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTTCTTGTCGTTATTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 39123-30955 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPSD01000011.1 Sulfolobus acidocaldarius strain NG05B_C06_07 NG05B_C06_07_scaffold1_last, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================== ================== 39122 24 100.0 35 ........................ AGCTCTTTCGCACTGTTATTTTACAATTTACACGT 39063 24 100.0 34 ........................ GCTTGTTGATTTGGGCCCATGCGAGGAGGATTAA 39005 24 100.0 38 ........................ TGATATTGTATCGTTGTAGTTAGTATTGTCCAGAAGAA 38943 24 100.0 37 ........................ AAGAACTCCCGGGAGCCCTGGTGGTATGCCCGAAATT 38882 24 100.0 38 ........................ ATCGTAAGAGAAGTGGGCTAGCGCTACCCTCCTCCACT 38820 24 100.0 38 ........................ AGAAAATATCTCAAGGAGGGCGAGGAAGTATGCGAAAG 38758 24 100.0 32 ........................ TGGATGCTGAGTTAACTCCCCAGTTTACCGTA 38702 24 100.0 39 ........................ TTTTAGCCTGACCATTTCCCTCGTTAAAAAATAAGGAAA 38639 24 100.0 34 ........................ TTTCACGCTCCATGACCTCAGTGAATATCTCATT 38581 24 100.0 37 ........................ TCATAGGGGCTATATTCAACAATACGTTGCTCCAGTT 38520 24 100.0 42 ........................ GAGAAGAAGCAAAGCATACCGCTCTACAAGGTTCCTTCAGTT 38454 24 100.0 36 ........................ TATGTCGATCTGTCCGGTGTGCTGGTGGGCGAGCAT 38394 24 100.0 39 ........................ AAATAGTGGTTTCCAAGACTGTGCAAATGCTTTTTTATA 38331 24 100.0 35 ........................ TTTTAGCTGTTTCTCCATTCCGTCCCACCAACTAT 38272 24 100.0 36 ........................ TAAAATATTTTAATGTTCCGGAGATAGATTATAACT 38212 24 100.0 35 ........................ TGATATTTGGAGTGGTCGTGATTTTAATGGGAGCT 38153 24 100.0 35 ........................ ATTAACTACATCGCTAACAGCTTGGTACAGCCTGT 38094 24 100.0 36 ........................ AACAAAAAAATGAAGTTTTGGGTTATGACTTTCTAC 38034 24 100.0 37 ........................ TAGAGGCACAATTACAGAATTTAGTAATTGATCAAAG 37973 24 100.0 37 ........................ TGAATTCTGCCTTTTTATATAACGCATTACTGTGATC 37912 24 100.0 35 ........................ TTTGAGACGCTGAAAGACGTAGCGAAAGACTCTGC 37853 24 100.0 34 ........................ ATTAAAATGCTGTAGAAACACTTGACCAAATATA 37795 24 100.0 38 ........................ TAAAGGGATCCTGACCTAAGGACTATCGGGCTTACTTT 37733 24 100.0 35 ........................ ACTATCTCAGCTATCGTCACTATCGACATCTTCAC 37674 24 100.0 34 ........................ CATTTTATTTATATAGCCTCGTTGTATAGCTTCT 37616 24 100.0 35 ........................ ACTGCTAAAGAGCGCAGGTATTGCGCAAGACTACA 37557 24 100.0 36 ........................ ATAATATACGACGCTCTGGTTAGGTAAAGGTACTCT 37497 24 100.0 35 ........................ AAAATTTCATTCTAAAGAGATAACAGATTTGGGCT 37438 24 100.0 35 ........................ AGTGAATGCTTGTCCTGAGCCTAGTCTGTTTAACG 37379 24 100.0 35 ........................ ACATTTGCTGGAGTTCAGAAAATATCAGTAACCAA 37320 24 100.0 36 ........................ AAAGTTGTTTCAGCCCCATCTTCAATAAGTGAAGGT 37260 24 100.0 36 ........................ AACATAAAAAACACTGCTAGTTTCTATCTGATTAAT 37200 24 100.0 36 ........................ ATAGATAAAATAAATAGTTAATGTTTCATAAAATCT 37140 24 100.0 36 ........................ AACAACGTGATGATACTGACATTTGCGGGCTATTGT 37080 24 100.0 34 ........................ GCTGTTCATATAACTGTAATAAATTAAGAAACTT 37022 24 100.0 34 ........................ AACTCTTGAATTGTTAAGTCTTTAATGAATGCAT 36964 24 100.0 34 ........................ AATGTACACCGTAGCCATTTTTTTGCACTTCTTT 36906 24 100.0 35 ........................ AAGAACAGCGATGTTTACAAGTCAGCACAAGACGT 36847 24 100.0 35 ........................ CATTTTCTTGGTTTTATCTATTTACCGTTTTAAAC 36788 24 100.0 37 ........................ CTAGATTGTTAGCACCGTGCATTAGCAATAATGCGTT 36727 24 100.0 34 ........................ GATTGCTGATGACGATGGAATAGTTACCACAAGC 36669 24 100.0 35 ........................ TTTTATTTTCACCGACAAAACGAAAAAAATTGAAT 36610 24 100.0 35 ........................ TTAAAGAGGCAACAAAGCGAAAAATTCTATATGCC 36551 24 100.0 35 ........................ TTGTTGTGCTAACTGGTTTATCGCATCCCCTATTC 36492 24 100.0 35 ........................ TTATGTTATTTGTACAAACTTCTTAGTTGCCAATT 36433 24 100.0 36 ........................ TTCTTGTAGTTTCGGGAAGACATTCTCACTGGTGTA 36373 24 100.0 39 ........................ TAGTAGTAGTTAATACTGCTGACTGAATTTTTCTTAGTT 36310 24 100.0 35 ........................ TTTATTTCAAAAAGTTACACTATAAAGATGAATTA 36251 24 100.0 34 ........................ TTGGGTAAGATCTAGACCTTATGTTCCTCTTTCT 36193 24 100.0 33 ........................ TTGGGATATATTGCACAGACAAACTTTGTCTCC 36136 24 100.0 40 ........................ ATGTTAGGAATATTGTTAAAAATCCGCCTATAATTCCGAT 36072 24 100.0 34 ........................ ATTTTTTATGCCATACCAACCCATTTTAATCAAA 36014 24 100.0 34 ........................ CAGTATATGCGTGTTGATGATTTTCTGAAGACTT 35956 24 100.0 34 ........................ ATAGCAAAGTACGAATAATCTATATTCCTGACCT 35898 24 100.0 34 ........................ ATATCTCATGGTTATGTTTCTTCAGATCCAGGCT 35840 24 100.0 35 ........................ GCGGCAGCTACTGGGTCTAACGCCTTCCACTCGAT 35781 24 100.0 35 ........................ ACATAAGCCAGCTAAAGAAGACGTATCTGACTGAG 35722 24 100.0 37 ........................ ATTATAAGTAAGGGCTGACTTGTTGAGTAAGACTGGT 35661 24 100.0 37 ........................ ATGATTATGAAATTTGTACAGCAAATGTTGATGAGAA 35600 24 100.0 36 ........................ AATGTCTTTTTTTATATAAATTTTTCGAGTCCTAAT 35540 24 100.0 35 ........................ AGGGAAAAGATCCTCTTCCTAGCTCCTTTCTCTTG 35481 24 100.0 36 ........................ CCTGTACAACGAAAACGGGACATTGTGGGCAATACA 35421 24 100.0 36 ........................ CTCGACCTCTTCTACTACTTCTGGTGGTGCACCCAT 35361 24 100.0 41 ........................ TTAATTAAAGCGGCAAGCTCTCTAGCCAGGCTAGATCCCTT 35296 24 100.0 36 ........................ AAAACAATGTTTTAGTTTTACAGACATTATAAAATT 35236 24 100.0 36 ........................ ACTTCAAGAATGGAATACATTTGTTAAAAATTTGCT 35176 24 100.0 34 ........................ GCCCAAGCTCAGGCTGGAAACAGTGGAAATCCGC 35118 24 100.0 35 ........................ ATATAACAAAGCGCATTGCTGATACGTTACACAGA 35059 24 100.0 34 ........................ TCCATGCCCTCGCCCCCGCCTTTTCTTTTTCTTT 35001 24 100.0 35 ........................ TTCCACATTGATGAGGTAAGCCTCTGAAAAGGTTT 34942 24 100.0 36 ........................ TGTGACCAAATTGAGGCAGAAGTATCCGCAGGGGAA 34882 24 100.0 36 ........................ ACCCCTGACTTTGTCCTTAAAGATAATGAGTTCTTT 34822 24 100.0 38 ........................ AGAAAATGAGTAGTGAAGTTAAGACAAAAAATAAGTCA 34760 24 100.0 38 ........................ TTCACTGTCAAATTTGTCTAGCAGTTCTTTTGCGACTT 34698 24 100.0 35 ........................ ATTATACCACGCCAAAGAGATGGCGTGAGGCGATA 34639 24 100.0 34 ........................ TATTTGAAGGCTTCCCTTAGGGCGTTCTTTAGCG 34581 24 100.0 35 ........................ GTTAAATTCGGCGCCCCAGTAGAAGTCTTTCTCGC 34522 24 100.0 38 ........................ CTATGTGTTGATGAGAGCACAGCTGGGCATGGAGCGTA 34460 24 100.0 35 ........................ AGATGTAGAGAAAACGATCGATTTAAGGCATGCGA 34401 24 100.0 35 ........................ AATAAATCAATCCTTTTTTTAAGGTCTTTCCAAGA 34342 24 100.0 40 ........................ TCAACACAAGGAAACACTTACAATTGGTATGAGTATGAAG 34278 24 100.0 34 ........................ CACTAGACACTGCAGGGACAGATATCAAAAACTT 34220 24 100.0 37 ........................ GTGCCCCTGTCTCCTGCAGTTTTAACGCTAAATATCT 34159 24 100.0 36 ........................ ACCTATCACTTTCCTTGCGAATTCAACCAGTGTTAA 34099 24 100.0 37 ........................ CACCAGCTGTGATGACATAGTCTTTGTCCAGTAATGG 34038 24 100.0 34 ........................ TTCTTCATAAGGATGTATCTGTACCAGTTCACCA 33980 24 100.0 36 ........................ GTCTTTACAGAACTTGGGGCGAAGTAGTATCCCGCA 33920 24 100.0 37 ........................ GATGAACTCGCCTGTGTTACTTGATGTGTATAAGGAA 33859 24 100.0 36 ........................ AACTCTGAGACTGAGGTTCTTTTTGTCTCACTAGAT 33799 24 100.0 35 ........................ ATAGGCTAGAAGCTGCAAAGAGGCTGGGCTGGAAA 33740 24 100.0 34 ........................ TACTGCAAGATCTACATTATAGTTCAATGATTTT 33682 24 100.0 37 ........................ ACGAGTCTCTTTATCAATATAGTGATGTTATCTACAT 33621 24 100.0 36 ........................ TTTTTTGCTTTTAGCTTTTCGTATTCTATTAATGAT 33561 24 100.0 37 ........................ AGTGGCTTAATGTACCTTTTGGTACTGACTATCCAAT 33500 24 100.0 34 ........................ GCTGATAGATAAAGATAAAATAAAAATAGACTTT 33442 24 100.0 37 ........................ GTCTACTTTAAGTGAACTTTATTGTAATCGTATCAAA 33381 24 100.0 33 ........................ TAAGCGTCTAAATAAGTTACCGACAATTGTTAT 33324 24 100.0 35 ........................ ATTGTTGAGAGATGCTACTTATGAAGAAAATGGAA 33265 24 100.0 38 ........................ CTTCATAACTCAACAAAACAAATAAGGTATGCCACTCT 33203 24 100.0 37 ........................ CTTAGCGTAAGAGAGCGTATATTATGCAGCGTATATT 33142 24 100.0 37 ........................ AATTTTCAGAGTCACTTACTTGGAAATTTTGTCTCTC 33081 24 100.0 36 ........................ CAAAAACTGCCGTTTAATGCGCCACTTCTAGAACAA 33021 24 100.0 35 ........................ TTTTGAGAATAGAGTCTATGAAATCTCCTTTTATT 32962 24 100.0 36 ........................ AGGTTCACTCACCCTCGCCTCGCAAGATATTCCAAA 32902 24 100.0 39 ........................ ACAATTCTTTCTTTTTTTATAGCTGTTGTACACATTCCT 32839 24 100.0 35 ........................ TAGTAATATCTAGCGACTTCCATAATTGCTGATGC 32780 24 100.0 35 ........................ ATTATAAAATTGATGTATTATACATTTGCAGAAAT 32721 24 100.0 39 ........................ CGCTATTCTCAAGTACTCTGCGATCTCGCCCTCTGAAAG 32658 24 100.0 38 ........................ TTCATATCGCTCTTTTGAATACTTCATCAATTCTTGTT 32596 24 100.0 34 ........................ TTTTATATTCTGTTGTTCATTTTTTATATCATTT 32538 24 100.0 35 ........................ ATATTATTAGGAATGACAGCCGGAGCTACTACTGT 32479 24 100.0 35 ........................ TTGTACAAAAAAGCTGAATTTAAGCAAGTCGGAAT 32420 24 100.0 36 ........................ ATTTAGTTTGAATATTATGAGTAATTGAGAGTTGGT 32360 24 100.0 37 ........................ TTGCTACAGGAAATGGAGAAGGTGAATATCAGGGAGG 32299 24 100.0 38 ........................ TTTTATCTTCAAAGAGTTGAAAAAGAGAGGGTTAGATA 32237 24 100.0 37 ........................ CTTTCTTCTTCATCTTTATCGATCAAAATTAGCCTTA 32176 24 95.8 37 .C...................... TTTATTATCAAGAGCATTAAGTAATTTTGGAAGACCG 32115 24 100.0 37 ........................ TAATAACTCTCCTACCTTTTCTATTTTTAGCATTTGG 32054 24 100.0 37 ........................ TATTTCGTAATCTTCTATAAGTTTTGAGTTGAATGGC 31993 24 100.0 34 ........................ GTATAGTACTGGTGTATTACTTCCAGATATCCCT 31935 24 100.0 35 ........................ CACTCTCTTCAATCCGATTATATCAATTTACTACA 31876 24 100.0 37 ........................ GATTACTGCAGTGATGATGAAATATCGTGCTAATGAT 31815 24 100.0 36 ........................ GTTGTAGTCATTCCAGTAATGACTAAGATATTGTGT 31755 24 100.0 37 ........................ TGTAATACAATATTACGCTAGCAATACAACAAACATA 31694 24 100.0 35 ........................ ACACTCGCCGACTCTCTCTCATTTATTGCGAGATA 31635 24 100.0 35 ........................ GTGTTGTTCGAGACTTCTACTGCCATTAATATTAG 31576 24 100.0 36 ........................ GATTACTTTATGCTTTATTCAAATATAGAATAAAAA 31516 24 100.0 35 ........................ GTTGGGTATTTAAGCTTACGCATTATATTTTTGAG 31457 24 100.0 37 ........................ GATTACTGCAGTGATGATGAAATATCGTGCTAATGAT 31396 24 100.0 34 ........................ TAATATAGCGACCACAGAACTCTTGCTATATTTC 31338 24 100.0 35 ........................ CTCTCAAGAAATTCCAAAAGTTTATCAAACTCCTC 31279 24 100.0 37 ........................ TTTCTACATTATGTACTACCGATAAAACATGTGATCA 31218 24 100.0 37 ........................ TTCTCTTGGTTCAAAACCACTTAAATCTTCGTTATTT 31157 24 100.0 36 ........................ TTTTCATCAACATCTTGACTCCGGTATTCGACATCA 31097 24 100.0 35 ........................ AGTGGTCAGGGCTAGATATCTGCCCACTACCAACT 31038 24 100.0 36 ........................ TATCAAGAAAAATAGGGCTAGCCCAATTCCAATGAT 30978 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ========================================== ================== 137 24 100.0 36 GTAATAACGACAAGAAACTAAAAC # Left flank : TGTCTTTACATTCATATGTGGAATTATTTTTGAACAATTTAATATGTTGTAGGGCTTGGGATCTCATGAACAGTTACAGTAGGTGAGCCTCTACACTTACTTCATTGAAGTTTGTCCACTGCGTTAAAAAGTGTAATATATAAAAATTTTTAAGTTACAAATATACCTTTAAAAATTTTTAATTTTATTACATGCCTAGATAATTAAAAGTAAGAGCTTCATTGAGTCTAGTAGTAAACTGTCTAAAATTCATAGAATTTTATTATACACTTATTAGTCTACCAGGAGAACATCGAAGAAATTCATGGATAAACATAAAAAAAGAAATGGAAGTGGTATTATGTTATTTCCTTCCGTATCCTTACGTAAAATGGTTTTAGGGTTACCCTGTGTAGCCTAAAACTCCCTTCCGTACCTAAGGGCACAAAATTGACAATGAAGGAGAGAAAATATTTATAAACCAGGAAATAAGAATGTAAAATTGATGGAGGCAAGGATCA # Right flank : TCCATGTAAAATATCATGACACATATATTAATTTTGAAGCAAAATTTTACGTCCCAAATGTTATCGCTTATGTAGGGTTATAACGTGTCCCTTGTGTGGTTATGAGAATCAGTACTCATACAAAGTTGATTACCATATTGATCCAATCTCGGCGGAGGGGGAGTCTGCAACGTTAAATGTTCCCTCCTTCAACTCTGCTGTAACAAATAAGGAAAAAGTTTTTATTCTCTCAATATTTTGATTTAGTTTATGAGGATAATTGACGAGACTAATTGACATAGTGAAGAGTAATCCGAAGATTCTCCTGTATTTGCTGCTTCCAGCGTATGTACCCATTTTTCTCACCGTTATAGCCATTATTGAAGCGTTGACGGCAGTCCCTCATTTAAGTGAAGTAACGCCTTTACTAATTATCACACCTATAATAACTGTGTTCTTCGTTCCCGCAATAGCATTCTCGTTGTACCCAAATCTACCTCTGGAGGTGGTAAGAACTGGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAATAACGACAAGAAACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 51490-53673 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPSD01000011.1 Sulfolobus acidocaldarius strain NG05B_C06_07 NG05B_C06_07_scaffold1_last, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================= ================== 51490 24 100.0 38 ........................ CTCTAAGAGGATCTTTGCCAGGGCATAGTAATAAGCTG 51552 24 100.0 35 ........................ GAGTTCAAATAGAATAATGGAACTGAAGATACATT 51611 24 100.0 36 ........................ GAAGCAGAAATTCGATGAGGCATTAAACGCATTAAA 51671 24 100.0 38 ........................ AACAGCATTAATATTCCGAGGAGGATTGCTAAACCGTT 51733 24 100.0 36 ........................ ATCTTCTCTGTCCTCTACTACTTTCTGCTCTTCTTT 51793 24 100.0 36 ........................ TGAAAAGTTCATAAAAAAGTACCCTAACGTAGAACA 51853 24 100.0 34 ........................ AATTTTATGATATCGCTTTTGTTCAAGGAAACAT 51911 24 100.0 39 ........................ AATTCTAAGTGCACAAGAAGGACTAGAAGAGGCAGGCCT 51974 24 100.0 34 ........................ TAATGCCCAGTAACATAGATGCCTCCTTGATTAT 52032 24 100.0 35 ........................ AATTTGGATTGACGTCACCTCAAGATCTATTACCT 52091 24 100.0 36 ........................ ATATTTAAGCCTTACTCTTTACATTAAAAGTAACAA 52151 24 100.0 8 ........................ TCGACGNT Deletion [52183] 52183 24 100.0 36 ........................ ATATTTAAGCCTTACTCTTTACATTAAAAGTAACAA 52243 24 100.0 35 ........................ TCGACGTTAGTCTTAGATTTTTATCATTTTTAGGT 52302 24 100.0 34 ........................ TTGTGCTCTTTAATGTCAAACAGTGTGATCTATT 52360 24 100.0 35 ........................ ACAGTGCATGAAGTAGCATCATATGTCGTAAGTGA 52419 24 100.0 36 ........................ TCTCTGGGTTAAGTGCAAAGAGCACTGGGATTACAA 52479 24 100.0 34 ........................ CAACAAGGCTGAGAAGATAGCAAAGAAGCTAGTA 52537 24 100.0 38 ........................ TACAATAATTTCAGATTTCCAGTAAATGATACAAATTC 52599 24 100.0 36 ........................ TTGTCATTAAACTGACAACTTTGTCTCTGACCCAAA 52659 24 100.0 34 ........................ AGTAGCGGTATACAAAAATGTATTTGTTGTGATA 52717 24 100.0 34 ........................ TGGCTCACAGGCATTAATACCTGCAAAGCCTAGG 52775 24 100.0 39 ........................ AAAAGTTTGCCAATTTAGGTGCTGTGCAGGAAGCATTTA 52838 24 100.0 34 ........................ GAATAATTGTAGATCAGCCATCAACTTCCACACG 52896 24 100.0 36 ........................ AGAAAATGAGTAGTGAGATAAAGACAAAAAATAAGT 52956 24 100.0 39 ........................ AATTTCTATATAATCCAAGAGACACAGAGAGGTTTCTAC 53019 24 100.0 37 ........................ TACATTACTTTTAGAAATATAGTATGAGCGTAACATA 53080 24 100.0 9 ........................ CAGTACACN Deletion [53113] 53113 24 100.0 37 ........................ TACATTACTTTTAGAAATATAGTATGAGCGTAACATA 53174 24 100.0 33 ........................ CAGTACACAAAGTGGATAGGAAAAGTCAACAAT 53231 24 100.0 36 ........................ ATCGTATATTATATTGGGGCAGAAAAAATGAATGAT 53291 24 100.0 34 ........................ CAGGTTCAATTTCAGTAAATAATGGCATTACAAT 53349 24 100.0 38 ........................ AACATCAGACTTTTGCACTTTTATTAGAAGGCTTTGGA 53411 24 100.0 34 ........................ GATACATTGCATATATTGGCAATCAGCAATACAA 53469 24 100.0 36 ........................ ACTATATATTGTTTGGAGCTTATCATAAACTTCATC 53529 24 100.0 34 ........................ CTGAATAGAGAGATGATAGAAGAAACGGTAAGTA 53587 24 100.0 39 ........................ TCAGCCTCTAATTCTGCTGCAACTTCCATCAATTTCCTT 53650 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ======================================= ================== 38 24 100.0 34 GTAATAACGACAAGAAACTAAAAC # Left flank : ATCACTTAGAGTATAAAACTTCCTCCTCACGTTCACTAAAGAGTTCAAGAACGGCGACACTAGGACCACATCGTTTCTCTTTCCGTGGACGAGAACTGGTATATTTAGACTGGAAAGGAACAAGATCACCTCTGATGTTAGCCTAACATTATTACCGACAATGACCACTAACTCTAGGTCCAGACTAGACACAGTTAAGTTCTTTCCAACGGACCATGTCATCTGAAGATCTGAGCCTTTCCTCATAATTGTAGCGTTTTTAATCACTAGAATGGACATAATAGAAATTTTTCTCTCAAAAATAATAAACTTTTATCATAATTAATAAATTTTGGGTATTATGTTATTTCCTTCCGTATCCTTACGTAAAATGGTTTTAGGGTTACCCTGTGTAGCCTAAAACTCCCTTCCGCACCCCAGGGAACAAAATTGACAATGAAGGAGAGAAAATATTTATAAACCAGGAAATAAGAATGTAAAATTGATGAAGCCAACGATCA # Right flank : AT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAATAACGACAAGAAACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //