Array 1 1-162 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSZA01000037.1 Phormidium willei BDU 130791 contig00037, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================== ================== 1 14 50.0 46 --------------.............. AAAGAGCTTCTATGGGGGGAGATACGCCGTTTTCTTGCCCGAAATC 61 28 100.0 46 ............................ GAGTTCTACGAAGATGGAACAGTGGGATATAACCCAGCCCGAAATT 135 28 96.4 0 ...........................A | ========== ====== ====== ====== ============================ ============================================== ================== 3 28 82.1 46 CACCAAAATCCCTTTTAGGGATTGAAAC # Left flank : | # Right flank : AACCCGCCTATCAAAAAGCAATTACCCTGGATTTTCCCCCAACTCCCGACAATACTCCAAATAATCATCGATCGCCCCCCGAAAATCCCGTTCCAGTTCCTCAAAACTAGCCCCGTGATAAGCCACCACATCCCTAAGATTGAACACACAGCCAGACAACATACCGCTGTCAGCATCAACCTCAACCTTGCCCGTATAACCCTTATAACTCAACATCACCTCGAGATCTCCTTCTCGCATCAAACCAAAAGCCAAAAACCCGGTTTCCAAAAACCGGGTCTCTAACTCAATTAAAGCATCAACCCCTACACCGTCGCCAACTCCGCCGGGAGACGTTTGAACGCCAGGCGCTCATTTTCCACATCCACAAACACCGTATCGCCGTCGTTGAACTCCCCGCGTAAAATCCCCTTAGCGATTTGGGTTTCGAGTTCCCGTTGAATCGCCCGTTTGAGGGGACGAGCGCCATAGACAGGATCATACCCCACATCCGCCAACAA # Questionable array : NO Score: 7.77 # Score Detail : 1:0, 2:3, 3:3, 4:0.10, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CACCAAAATCCCTTTTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA // Array 1 1199-141 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSZA01000057.1 Phormidium willei BDU 130791 contig00057, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 1198 35 100.0 39 ................................... AAAAACTCTCTGTCCCAACCGCAACGTTTAGCCCAATGG 1124 35 100.0 42 ................................... ATTTCGTCCAGATCTCCTTGAATTAGTGCTCGGATCGAAGGG 1047 35 100.0 39 ................................... GGGATTTGTCCGTCTTCGTACGAGAAGACAGGCTCTGGA 973 35 100.0 36 ................................... AGTAAGAGAGATGTCAGAAATTTCCGCAAGACACGT 902 35 100.0 38 ................................... TTGGTCACTCAAGACTAGGTAGCTCACAAAAAAGATGT 829 35 100.0 37 ................................... ATTGGAGGGTGCCTCCCTCCGTGGGAAGGTAGATGAG 757 35 100.0 37 ................................... TCGATAACATCCCCTTCGCAGAGCACGATATTGAAAT 685 35 100.0 38 ................................... CATTGATTTTCCGCCTCTTCGGGGCTGAGGAAATAGGA 612 35 100.0 40 ................................... TGGTCGATCTTAGATCCTATCAAGAATGATAGGCAAAATG 537 35 100.0 40 ................................... GTTTCTCCCCCCTCGAAGTAGGAGAAATTAGTCCCGAAGA 462 35 100.0 39 ................................... TCTCGATGTGCACTGCGTAGAAGTCACCACCTTCTCCGT 388 35 100.0 35 ................................... CCGAACTTGGGCATTGTGCTCTCCAATTACTGAGG 318 35 100.0 38 ................................... TCGTAACACTCCGCCCCAAAATACTCCTGGGAGAAGAA 245 35 97.1 35 ..................T................ AGGCGAACTAATAAGAATAGAAGACGCAACGACAA 175 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================== ================== 15 35 99.8 38 CTCACCGCTTCTTCGGAAGCGGAATTAATGGAAAC # Left flank : GAGCTTGACCAATCGGGAGGGGAACCAGCACTCTCAATAGCAGAAACCACTCAAACCATCGAGAGCCGGTGAAAAAGAACTCCCCACTCTACAATGCCCTGAATCAGTGGATCGGTCAAGCTGGCTGCTGGCGTTATTTGACCCACCTAACTACCTGCCTGTGGATGCTAGTGGCTTGGATACAGACGCGAAGTGTTAATCTTCACTCAATGGCGGCGACACATCGCTGGTCGAGGCAACTATGCCCAAGGGATGGCTTTCGCTGTGACATTAGCTAGGCTTATGGTTTATTCTCAATCGATAATCGTCCACGGGGGTCAGGCGATGGCTGAAACCCCTATTCTGTCGTGGAGTGCCACATATTTCTTGCTACATCTGGGGTTACGGGGGGTGAGATGGCCAGTTATTGGGGCTACTTCTCAATTGTGCGAGGTCTGTCTTGACCCCCCCGGATCGGTGGGGTTACAATCGGGGCGTGGAGCGGGTTCTATGAGCCTGCC # Right flank : CTAGAGTGCGATTCGTTCGCTGGCTAATACATAACCAGCGGGGAGAAACCAACCTAAAACGTTGGCTCCTAACTGACTCTTTGATGCAAGTGAAAGTCTTGCCCTGTAGGAGACATAGTGACTCCTAACCTGGCCACACCG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCACCGCTTCTTCGGAAGCGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 299-37 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSZA01000054.1 Phormidium willei BDU 130791 contig00054, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 298 37 100.0 36 ..................................... ATTGTTACTTTTGGAGATTTCCCAATTATGGCTATC 225 37 100.0 38 ..................................... CTGGTCAATAGTTATTAACAGTAATAAGCCTGAGAATA 150 37 100.0 40 ..................................... AAGCTTTAGACTTCACCTCGGCTGGCAATAACTCTGCTTC 73 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 4 37 100.0 38 GTTTCCGTCCCCTTGCGGGGAAAAGATAGGAAAAGAC # Left flank : GTAACATCAATGTCTGTAGGGGAACCCACCCCTAACCCCTCCCAGGAGGGGATGGCTGTTCGCCCTCCCCGGTGTTAACGCATAGCAAGTATTTTGCAAAATAGTATCACCATCAACTTGGTTGGTTGACTTTAGTCTAATAAATCTAACAGAAACATTGTCGCTTCGTCCTTAGTATTAAACAATGTATCTGACAGTAGATATGGCTGAAAAAATTCACCACGTTGGGGGTTTAAAGCCACCCAGCAGATATCTCTACCGAACATACTTCCTGTACCAAAAACATTTTCGTATTCGGACTGGGCAATTTCTCCTAAAACTATCCAAGCAGGGTTTTCTGGATTTCTATACAAGACCACTTCACGATATTTCCCATTGCTGACATATAAAATTTCCATGACAAATTATTTATCTCTTTCAAAGGATTTTGGCTCCAATAATTTATAATCTTCTGTTTTAGTTGTAATGCGATTCTTCATTGTGTTTATTTGAGGTGAAAT # Right flank : CGGGAGACGGCCCTATGACGCTTTCCACTCGTATTGC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTCCCCTTGCGGGGAAAAGATAGGAAAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 1 20004-20694 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSZA01000080.1 Phormidium willei BDU 130791 contig00080, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 20004 35 100.0 39 ................................... TTGCATCTTGAAACACGGTAGGATACGAGCCTTGAACAG 20078 35 100.0 37 ................................... TCTTTGATCCGACCATAAAGGCGGCGCAGAAAGCCGC 20150 35 100.0 37 ................................... GATGAGTTTGCGGTATTCCTTAACATCACTCCCAGAG 20222 35 100.0 38 ................................... GAGGAGGCGGTCGGTCCTTCTTGGTTGAAGGAAGCAGA 20295 35 100.0 42 ................................... CGTCCGCTCTCGATACACCAGCCAGTCCAATGGGTGATTTTG 20372 35 100.0 34 ................................... TCAGGGTCGGTTTCTAGACCGAATGCGTTTTGAG 20441 35 100.0 38 ................................... ATGGTAACACCAGCCGTATTCGCGGGCGGTGCAGAGAG 20514 35 100.0 38 ................................... GTTTGAAGCCATCCCAATGTTTAGACCAACAGCCGCAC 20587 35 100.0 38 ................................... AATTTGTTCCAACTCTCCTGTATATTGAGAGCCTTCTT 20660 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================== ================== 10 35 100.0 38 CTAATCGTTTCTTCGGAAACGGAATGAATGGAAAC # Left flank : TTGCTGCATTTGGCGTTACTGGATTTTTTGTTGGAGGAGTTTGAGACGCTACCGCCGTCATTGCGCGATCGCATTTGTCCAGAACTCTCAGATCGTCAAGGTCAGCGTGACCTGTTTTGAGTTGAGTTCTGTTTCTATTCTGGTTCCTAGATTCACCGTTGGGTGAGTCGTCGCTTCTTCGGAAGCGGAATGAATGGAAACTCCATTGTCACAAGATCGTTCTGATACCGATCTGCTGTCCCCGGTTCGACTTGCAACCGGGGATTTTTATAATTAAAACTGATGGTTTACTCGCAAGTAATAAGCATCCACGGGGGTCAGGCGATCGCTGAAACCCCTATTCTGTCGTTGAGTGCCACGTATTTCCCACCACGTCTGGAGTTGAGTGAGTCTCGATGGCAGCTTGTTGCATCTAATTCTCAGTTACGAGGGCTTGGACTTGACCCCCCCGGATCGACGGGGTTAGAATCGAGTCAGGGAGCGGGTTCTACGAGCCTGCC # Right flank : GATGTCCGGAACCTCTTGAATCTCGAGGAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTAATCGTTTCTTCGGAAACGGAATGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.50,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [35.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 18288-17510 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSZA01000088.1 Phormidium willei BDU 130791 contig00088, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 18287 35 100.0 40 ................................... CGAAAACTGCAACCGTCCCCCATTTGTGGGGATGTAACGA 18212 35 100.0 35 ................................... AATGGAAAGCAGAACGAATTTGAGGCTTGAAGAAA 18142 35 100.0 39 ................................... TCCTTCTCGGCATCACGGAAATTGACTAAATCTTCCAAA 18068 35 100.0 39 ................................... AAACGGAAGCAGAACGAATTTGAGGCTTGAAGAAAAGCC 17994 35 100.0 38 ................................... CCTCTTTTCTTTACCGAACTCGGATGAAACCACAACAA 17921 35 100.0 39 ................................... TGGCTTGGAGGAGGTATTGGTTGTTCTCACTCAACTGCT 17847 35 100.0 39 ................................... TTTGTAAGTCCGGAAAACGGACATCGAAATAGGAAACGA 17773 35 100.0 43 ................................... ATGACTCGGGTTGGCTGGGTTGCGGTACCGAACGAGGATGCGC 17695 35 100.0 41 ................................... CATTCCGTTGATAATAACGGAAATCGATAGAGTAATCAAAG 17619 35 100.0 40 ................................... ATCAACCTTCTCTAATTATTCAGCTAAAAACTAGTTGCCG 17544 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =========================================== ================== 11 35 100.0 39 CTAATCGTTTCTTCGGAAACGGAATGAATGGAAAC # Left flank : | # Right flank : GCCCAATTTGGTGAAACCAAATTGGGCGTTTCCTATCTGAATAGCTTCTATAATTTTGAGGACTTCCGAGGCTTCCTAACCCAGGCTAAACCCTTACAAACCCCGCTCTCGGAGAATACGTGCCTTCACCAAATCGGGCGTTTCCGAAAAATCCAGCAACGCATCCAATAACTCCGAAGACACCCCACGTTCCTTAGCAACTGCCACCACCAACGCCACCTGATTTGCAACAGCAAGCGGTGACTCAGAATTCAAACAGTCCTCAAGCACTAACCGTCTCAAAAAATCCGGGTCGTATTTTCCCAACTGCACCAACAATCCCGTCATCACCGTGCGATCGATTTTCCGCTTAATATCCACCACCTGAAACAAACGCCGCGTCCGCACCTGCAACGGCAATATCCACTGCGACTGCTCCTGCATCGTCAAACGATTGAGCGCGAAAAACGCAGGGCGTGCCACCTGGGTCGCCAGGTTGGGGTCTTCCACCAGGCGATCGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTAATCGTTTCTTCGGAAACGGAATGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 459-39 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSZA01000095.1 Phormidium willei BDU 130791 contig00095, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================= ======================================= ================== 458 39 100.0 35 ....................................... TCTACGTCTCTATCTCGAGAGACTGCCGAGGAGTT 384 39 97.4 36 C...................................... GGGATAATCATAGTGACCATAGGATCACTGGGTTTA 309 39 100.0 37 ....................................... CAGGAAACCACTCCGACCCGGGTGGTGCAGTACGGCC 233 39 100.0 39 ....................................... GATTACGCCCGCCGTGGGCACCAGATTTCCCTGGAAGCC 155 39 100.0 39 ....................................... AAAACTTAATCTTCTGGGTCTCGCTGGCTTAGCTCTAGT 77 39 94.9 0 GG..................................... | ========== ====== ====== ====== ======================================= ======================================= ================== 6 39 98.7 37 TTGTTTCCGTCCCCTTGCGGGGAAAAGATAGGAAAAGAC # Left flank : TTTAGTTCAAAATATATGTCTTCTATTAGACGTTTAACGTCCCAATTCGCTTCATGAAAATTATCCCATGTTCTTAAATGTATGATATTTATTAAAGCACAGTTGTAAAATACTCTTTTGCTGCTTTTCCATTTTATAATTACATAAGGGATTGTTATACCACCCTGAACTGTAGTATACGTAAATTGCTTATAACCAACCACTTGTAATGGACTCTCAAATAAAGCCAGCGAAGAGTTTTTAGTTCCATCTATTTTGTCTTTTAAAGCATCCAGTAATTCGTTATCCATACTTTTCACTATTTTCGCCCCCTTGCTTAGAACCAATAGTCCGGACACTTTTAGATGCAAGGGCTGAAACCTCCATTCTTTCGTTGAATTAACGATCTCGATATGGGGCTGAAACCCTAATTCCCTCGTTGTCCGTCAAAAACTGTCCGGAGTGTTGTAGAACAGATAGGAAAATAATCTCTATATTATAACTCTTTTAAAGTCGAGTTT # Right flank : CTTCCTTTTTATAAAAAGCTCCATCACAGTTATCAGGTA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGTTTCCGTCCCCTTGCGGGGAAAAGATAGGAAAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.28%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.90,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA //