Array 1 124891-123997 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QLZC01000003.1 Streptococcus agalactiae strain 3966RFQB contig000003, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    124890	    36	 100.0	    30	....................................	GGACAATAATGGAAATTATTACTTAGTTGA	
    124824	    36	 100.0	    30	....................................	GCTGCTTTAATCGGTACTGACTATAACTGG	
    124758	    36	 100.0	    30	....................................	GACCTAGGTTACTTGTTGTCAATTAGACCA	
    124692	    36	 100.0	    30	....................................	CTATCGTCCACGTGGCCGGATGGAGTATAA	
    124626	    36	 100.0	    30	....................................	GGAGAATACACTCTCAATGAGCACCTGTGG	
    124560	    36	 100.0	    30	....................................	TATCTAGCTTGTTATCTTTTAAATACTTTA	
    124494	    36	 100.0	    30	....................................	TGGTGGTATTTATAATGTACGAGCAAATCG	
    124428	    36	 100.0	    30	....................................	TGAGTCTCCCCTGTAAAACTCTTATTTGCC	
    124362	    36	 100.0	    30	....................................	TTTATAAAAATATCAGTTTCATGGCTGTTT	
    124296	    36	 100.0	    30	....................................	CTTGATATGATTTAGTCATGTACTGTTCTA	
    124230	    36	 100.0	    30	....................................	ACGCACCCATCGGTATACTATGCAATAAGG	
    124164	    36	 100.0	    30	....................................	TTTACAGGATTTCCTAGAAGAACGACTTTA	
    124098	    36	 100.0	    30	....................................	TGGTTATACATTTACTAATCCATCAGCATT	
    124032	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        14	    36	 100.0	    30	GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	                              	       

# Left flank :   CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG
# Right flank :  AAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:58.33%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-0.20,-4.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,4.87   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
//