Array 1 39605-36744 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVSU01000040.1 Paraclostridium bifermentans WYM contig40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 39604 29 96.6 37 ............................A ATGTTACTAAGAGATATACCAACTGTAAAATTACCAG 39538 29 96.6 37 ............................A ACACAAACTACACCACCAACGCAAGAAAAAACAACTA 39472 29 96.6 36 ............................A CATAAAAAGAAATAAAGGGCTTGTAACATATTGCTA 39407 29 96.6 37 ............................A TTGGATTATTGGTCAAGGATATTCCCATCTATAACAC 39341 29 96.6 37 ............................A GGGGTGGAATCAGATTAGTGGTTTGGTTTTATGTAAC 39275 29 96.6 37 ............................A CAAGTGTTAGAGATATTAGGCGCATAGAAGGATTTGA 39209 29 96.6 35 ............................A CTGTAGAAAATAAGGCTCCTATATTTTATGGAAAT 39145 29 100.0 37 ............................. CAAGCATTAAATGCTAAAGATGAATTCGTAGTTGATA 39079 29 100.0 38 ............................. ATGGTTGAACAAACTCAAGTTACACAATGGTCAATATG 39012 29 96.6 38 ..................A.......... ACAACAATACCAGGCATTTTAACATGTCTAGAAACTTC 38945 29 100.0 36 ............................. CCATTTCTTTTTCTAAATTTTCTATAGCATTTACAG 38880 29 100.0 37 ............................. GACACATTAGTATCTACATTATTTTTACTAAATTCAT 38814 29 100.0 37 ............................. AAAGGTGAAAAAGGTGATAAGGGTGATACTGGTAAAG 38748 29 100.0 36 ............................. AACGTAAGGTTAGTAAAAGCTCTTTTATTATTTAGG 38683 29 100.0 37 ............................. CAACCAAGATAGAGTGCAAGAGGAAAAAAGGTAAGAA 38617 29 100.0 35 ............................. GCACAAGTAGGGAGATATTCTGCAATAAGTAAAGG 38553 29 100.0 38 ............................. CTGTTTACCAACTAGAGACCAAGTAATTTATTATACTG 38486 29 100.0 37 ............................. AGTTTTAAATAGGAATGTTACAAATCATTTAGAATCA 38420 29 100.0 38 ............................. TTGTTATTTAAAAATGCTTTACGTAATTGTTTGTCCAT 38353 29 100.0 37 ............................. GTGGTTAAACTTACTGAAATTCATAGACAGGCTCAAG 38287 29 100.0 37 ............................. AAGTTAGAATCTATATTCAATGATTTAATCTTAGAAT 38221 29 100.0 38 ............................. TAGCTTTAGTGTCTACATTAAACCTTTTATCAATTATT 38154 29 100.0 37 ............................. TTATCTTTCCCTTTAAACTTTAAATTTTTAATTGTAA 38088 29 100.0 37 ............................. TTAGTAAAAAAGCCTAATAGATTAGAGATGTCAGCAA 38022 29 100.0 37 ............................. AAGGGGTTAGCAGTTTTAATGAACTCGTCTATAAATA 37956 29 100.0 37 ............................. CTGTATCATATAATTGATCCACACTTCCAGTGTATTC 37890 29 100.0 36 ............................. CGGAGTTATACCAAAGAATTTTAGTGAGTTCAAAGA 37825 29 100.0 36 ............................. TGGAAATATTCAATACTGGATTTAATAATTATTCAG 37760 29 100.0 37 ............................. TTTTCAATAGTATCACATGTTGCCAAATCTATACCTC 37694 29 100.0 36 ............................. TTCTAAAGCAACGCATCTTGTAGCTATATCTATAGC 37629 29 100.0 37 ............................. AATGTTTTTAATATTCCTTTAGCATATGCACGACCAA 37563 29 100.0 37 ............................. AAGAATTGTGAATATGTAAAATTTAGAATTTACAAAG 37497 29 100.0 37 ............................. TAATCTAATATTTGTGCTCTTTGTGCTGAAGATAATT 37431 29 100.0 37 ............................. AGAGAGTAGTAATGTTAATTCATGGCCAAAGTTAAAA 37365 29 100.0 35 ............................. GGATGATTATATGTCAGCCTGGTTCTTTATTAATT 37301 29 100.0 37 ............................. AAAGCATTTAAAATGCATAAAAAATTAAAACAGTTAC 37235 29 100.0 37 ............................. TTAAAAATAACTTTTTCAGTTCTAACATTTAAATACT 37169 29 100.0 36 ............................. GCGGTTGAAACTGGATGGCAAACAAAAGTTTACTTC 37104 29 100.0 37 ............................. TAATCTTATTTATGTGAGCGAACACACTGTTTAAATT 37038 29 96.6 37 .....................G....... TAGTGTAAACACATATTTCTGCTATTGTAGCAGGCTT 36972 29 100.0 37 ............................. TCTATTATTATTGTTTTATTGCCTTTTAAGTTCTTAA 36906 29 100.0 37 ............................. AATAGTATCTAATTCAATTAAAAGAGGTCAACAATTA 36840 29 100.0 39 ............................. AAATGATAGCGTATAAAACAGCGCAAGTTGCAGTTACTG 36772 29 93.1 0 A...........................T | ========== ====== ====== ====== ============================= ======================================= ================== 44 29 99.1 37 GTTTTATATTAACTATGTGGTATGTAAAG # Left flank : AGCATTTTATTAAAGATGAAAAATATAAAGTTTTGAAAGCGTGGTGGTAGTATGTTTGTTATCGTTACTTATGATATTGTAGAAGGTAAACCTTTAAATAGAACTAGAAAGATACTTAAAAAGTATTTAACTTGGACTCAGAATTCTGTTTTCGAGGGTGAGATTACAGAAAGTAAATTGCAAAAATGTATGTGTGAGATAGGAAAGGTTGTAAATAAGAGTCAAGACTCTATTTATGTTTATGAAGTTTCAAATTCTAAAAATATAATTAAAAAATCTTATGGAGTACATAAGAACTTTGATGAGATGTTTTTGTAGTTTGCAGTGGGCTAGAGTTGTGATAAAATAAACTGTAATAGTTGGAATATCTTAAGTCAAGGGATTATACAGCAATTTGTACAAATCCTTATAGGAGCCTCACTGCAAAATATCTATGTTTTTGAAGCATATATTTTATAGGATGAAGTTATTGCAAGTCTTTCAGATTGCTAATATTTGGG # Right flank : ATAGCTTATCATTTTTGAGCTTACTTTATTAATTTAATATCAATTATAAATTTAATTAAGTTTTTTAGTAAGTATATATAATTTTTAAAAAGTTTAATTTAGTATATGCTATTAAACTTAATTATAATTAATAATTCCAATTTAAAATATTACATAAGGTAATTATATTTGATATACTTTATGTAATATTTTTTTACGCTTAAGGAGGAAATAGAGTGGGTATAAATATTAGAAAAGAACAGTTGAAAGATAGGGAAGAAATATATAATCTAATAAAGGAATCATTTAAAAGTGCAGAGCACTCTGATGGAAGTGAACAAGATTTGGTAAATAGACTTAGAAACTCAGATAGTTATATACAAGAGTTATCACTTGTAGCAACTTGTGATAAAACTATAGTTGGGCATATTATGTTTACTAAAATATCAATAGAAAACAACGACTTAAAGACAGAATCACTTGCATTAGCTCCACTTTCGGTATTACCTAAATATCAAAGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //