Array 1 194747-194267 **** Predicted by CRISPRDetect 2.4 *** >NZ_NDYS01000002.1 Campylobacter concisus strain Lasto220.96 Contig002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 194746 37 100.0 39 ..................................... TAGTATCTTGGACTTCAATCTCCAAGACATCGCAAAGTT 194670 37 100.0 38 ..................................... GTGTCGTAAATTTTATCTAAAATACTACTTACCGTTAT 194595 37 97.3 39 ...................................C. CCAGTAAGCACTTTAAAACTATCTTTTGTAGGCATTTTA 194519 37 100.0 34 ..................................... GCTAGACGTAAGTCTTTTGACTCATAGGTTTTAC 194448 37 97.3 38 .....................C............... TTTTCACTTTGAGTTCTATGCTTCCAAGTGAATTCGCA 194373 37 100.0 34 ..................................... AATGCAATTCCAGATGGCAAACCTCGCCAATACT 194302 36 89.2 0 .....................C........C.-...T | ========== ====== ====== ====== ===================================== ======================================= ================== 7 37 97.7 37 ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : CTCGCGAAATAGGTTCGCAAATCTAGTTTTTTTTAAAATATCTCTCATACATTTGCGAACTTTTAGTTATGCCTAAGTTTAGGATAGCCTATTTTAGGACCTTGCGAAACTTATATACCGCTTAAAGTTCGCAAACCTATAAAATTTGAAATTTTTAAAAGAGATTTGCGAACTTTTTAGGATGACAAATGCCTAAATTTATGGGTTCTTTCACTTATCATTGTTAATTTTATGGAGTTAGTATTTTTAAATACCTATACATTTGCGAACTTTTTTGAGATTTTCACGAATTTTAGGTATCTTTAAAGCCAGTTTCTTAAATAATTTTACTAATTTTTCCTTTGCAAAAATAGTCTTTTAGGC # Right flank : TCCATAATACATATATAAATTTAGGCCATTTCGCTTACATAAAAATTGTAGATCTTTTTGCTTTCATTTTTTGTGACGTATCTTGTCTATGTTTTATTTTAAGTTGCTGCATATTTACAAAAGGAAGAGTAATGAAAATAACAGCAAGAGATGTGATAATAGTGGTATCTATAAAAAGAAACATCAATCTACAAGCAAGAATTGTAAAGTCAAAAAAGATCTATATAAGAAAGCAAAAGCGTTCAAATTGTCCTAAGCTCAAATAGTCTATTACCAAGAAACACTAGGATGCCTACTCAAATATGATCCAGCACATCTATCCGTTTAAAGTGTTTTAAGTGGATTAGCCAAAATAGTATCTAGCAAAGATAGAGACTAGTCGTCAGCACTTTTTATCGTAAAAAGTATTTTTCGCAATTATTTTTTTACACCAGTGATATTATCATTTATAATAACTTTTGAGCAGAAATATTTTAATGTGAGCTTAGTATTTTTAAAAA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:0, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 5284-4732 **** Predicted by CRISPRDetect 2.4 *** >NZ_NDYS01000003.1 Campylobacter concisus strain Lasto220.96 Contig003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 5283 37 100.0 36 ..................................... GAGATGTCTTTAATCTCTACTTCACATAACTCACAA 5210 37 100.0 36 ..................................... GCTACCTTAAAGTTTCTCGCAATCTCAGTGATTGCA 5137 37 100.0 36 ..................................... TAGGGATCTTGATGTAGCAGTGTTCGATGTTCATTT 5064 37 100.0 35 ..................................... AAATTCGGCAACAAGAATTTATCGCCACTTCGTCC 4992 37 100.0 36 ..................................... TTTGTAATACCTGCTTTTGTTTCGGTTGCAAGTATT 4919 37 97.3 38 ......................T.............. AGCTGGTCTTTATTCATACGATTACCTCCTTGTATGCT 4844 37 100.0 36 ..................................... CTCCACGTGCAATTACCATCTTTGTCAAGCCTTGAC 4771 37 97.3 0 ....................................A | AA,C [4737,4740] ========== ====== ====== ====== ===================================== ====================================== ================== 8 37 99.3 36 ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : CGAGCTCAATGAAGCCAAGCTCAAAAAACTGATAAAGTCCGCCAAAGCTTTGCTAAATGTCAAAACAGATAGCCTCAGATTTTACAGACTATGCGAAAACTGCGTGGGAAAAAGCTTTGAGCTATGCGATAAAAAAGGTATCTTTGAGATGCAAGAGCTCTTTGTCTAGCTTATGTCGTTCTTAAATTTCTTTTGTATTTTTGATTTGCGAACTTTTTTAGCTGAAATTTGACCCTTTTTGGCTAAAATCTCGCGAAATAGGTTCGCAAATCTAGTTTTTTTTAAAATATCTCTCATACATTTGCGAACTTTTTTAAGATGACAAATGCCTAAATTTATGGGTTCTTTCACTTATCATTGTTAATTTTATGGAGTTAGTATTTTAAATACCCATACATTTGCGAACTTTTTTGAGATTTTCGCGAATTTTAGGTATCTTTAAAGCCGGTTTCTTAAATAATTTTGCTAATTTTTTCTTTGCAAAAATAGTCTTTTAGGCT # Right flank : TGGTAAAGCGTAGGCGCTTTATGTTGTAAAAAAACGTGTAGTGCTTATATGCTTGTTGAATAAATTTAGATAAGAAGATGTGAGATGATAGGTTTTTGTGATTTGTGTAGATAAGTAAAAGTTACTTCGAATAAGCCATGAATTTTATTTCATGGCTGCATGGGCCAACTATTTGGAAGTTGGCTTCATGCGAAATGTGCCCTTAGTGGTTTGGACTTTGGTATAGCCGCCAAAGCTTTGACCGACTTTTTGATGAGCACGAGCAGATGAGTAGGATCTGCTTGAGCATGATTTTGAAGAAGATGAACGTGAATAGCATTTTGCCATTTTGACCCCTTTGTGTTGAATTATTTTGTTTTGTTGAGTGAATTATAAGACAACATGTGGACATATTGTGTATAATTAATAAAAAACTTTAGAGTATAAAGGATAAAGTAATGGATGCTCAAACTAGGATACTGTGGCTACTTAAAAAGCTAAACCGCGGCGAGATAATCGAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA //