Array 1 361655-363269 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYNW01000001.1 Salmonella enterica strain BCW_4923 NODE_1_length_590786_cov_3.58135, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 361655 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 361716 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 361777 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 361838 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 361899 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 361960 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 362021 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 362082 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 362143 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 362204 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 362265 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 362326 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 362387 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 362448 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 362509 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 362570 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 362631 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 362692 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 362754 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 362815 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 362876 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 362937 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 362998 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 363059 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 363120 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 363181 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 363242 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 379402-380878 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYNW01000001.1 Salmonella enterica strain BCW_4923 NODE_1_length_590786_cov_3.58135, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 379402 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 379463 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 379525 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 379586 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 379647 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 379708 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 379769 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 379830 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 379891 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 379952 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 380013 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 380074 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 380135 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 380197 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 380300 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 380361 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 380422 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 380483 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 380544 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 380605 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 380666 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 380727 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 380788 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 380849 29 96.6 0 A............................ | A [380875] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //