Array 1 92204-92963 **** Predicted by CRISPRDetect 2.4 *** >NZ_QIVO01000007.1 Klebsiella pneumoniae strain WUSM_KP_86 NODE_7_length_281118_cov_28.7126, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 92204 28 100.0 33 ............................ TATGCGCGGGAAGCTTTATCCCGATCTTATCCC 92265 28 100.0 33 ............................ CACCTAACGACGTGTCATACCAGCACTCCCCTA 92326 28 100.0 33 ............................ TCAAAAATCCCCGCAATGCAGTGAGGAGATCGG 92387 28 100.0 33 ............................ TTCCTTCACACCCATAAAAGGCGTAACTGAAAT 92448 28 100.0 33 ............................ TTTTATTTTGACGTTCCTCAAGTACCCGCACCA 92509 28 100.0 33 ............................ CGATATTTACCGGGATTTCAGCCAGCACGCTCG 92570 28 100.0 33 ............................ CGAGCTCATCGCCTCCCTGGAGACGGCGGGCGA 92631 28 100.0 33 ............................ TATAGTATGACGATTGATTCCACTCATCAATTT 92692 28 100.0 33 ............................ CAAGACACCTGCAAACGGTATATCTTTGGAGTG 92753 28 100.0 33 ............................ CTGTTTCATTCGCTCCGATGGCTCGATCTCCGC 92814 28 100.0 33 ............................ TTTTCGAACGTCATCGACGGCTTTTAGCATTTA 92875 28 96.4 33 ..................A......... CATTGGCTGTGGCGCCTGGACAATCGGCAAAGG 92936 28 85.7 0 .C....T.............A......T | ========== ====== ====== ====== ============================ ================================= ================== 13 28 98.6 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : GTTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTTGACGGCGCCGCGCAGGATAATAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCAGTAACTTTGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTGATATGGGGACATACTTTTTCGTTTGATAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTATCGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : TCGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGATATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAATTTTGAAAACTGTCCAGCGAAAACCCGGATG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 101716-102970 **** Predicted by CRISPRDetect 2.4 *** >NZ_QIVO01000007.1 Klebsiella pneumoniae strain WUSM_KP_86 NODE_7_length_281118_cov_28.7126, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================= ================== 101716 28 100.0 33 ............................ CGCTGTCCAGATAACGCCGCAGATCAGCAGGCA 101777 28 100.0 33 ............................ TGTCAGCACCGGCAAAAGCCGCCGCGGCTGCGG 101838 28 100.0 33 ............................ TATTCAGGAAAACGCGCGTTATGCTGCCGGTAT 101899 28 100.0 33 ............................ TCTGATAGGCCGCCTGGACCGCGTCCCGGATCT 101960 28 100.0 33 ............................ TACCCGCCGCTTCCAGTATCCGGAATTATCCGA 102021 28 100.0 33 ............................ CATCGCGGTTTCACGCTCGATCGGCATGTCCTC 102082 28 100.0 33 ............................ CAGCTACTCGCAGCTGGCATCCGCCGCGCGCGG 102143 28 100.0 33 ............................ TTGACGCAGATCCGCCCGTTCATGGGTGAGATT 102204 28 100.0 33 ............................ TCAGGTACTCCTCTTGTTTTTTCGGTTCCGCCT 102265 28 100.0 33 ............................ TAATGCCGCTTTCGTTTCGGGTTGTTGGTGACG 102326 28 100.0 33 ............................ TTAAAAAAGGCCGCCATATGGCAGCCTGATGGG 102387 28 96.4 33 ...C........................ TGTCGTCACATAGTGCTCTATCCACTGGTTAGC 102448 28 100.0 33 ............................ TAGTTCGCGAGGAGACGCCCCAAGGTTCACCGC 102509 28 100.0 33 ............................ CAATAGTCCGCCCGGAGGCGGCTCATTGTGTCG 102570 28 100.0 33 ............................ CCTCATCTAGTAAAAGCGGTTTTGTTATGAATG 102631 28 100.0 33 ............................ TCTGGTGAAAACCACACCAGGCCAACCGGGCGG 102692 28 100.0 33 ............................ TAACGACACCAGGCGGCATGATCACCTATGACA 102753 28 100.0 33 ............................ CTTCACGCCGATGGAGCGGTCTTTCTGCGTCGG 102814 28 100.0 33 ............................ TATTTCGGAGTGGCCCAACGACGCCGCCGTGTG 102875 28 100.0 41 ............................ TGGAATCCACGACGCGCCGTACCAGCGCGGGCATTCGTTCT 102944 27 85.7 0 ......A...T.T....-.......... | ========== ====== ====== ====== ============================ ========================================= ================== 21 28 99.1 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCACAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : CTTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGTAGAGGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //