Array 1 1672366-1671979 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP077331.1 Lelliottia amnigena strain FDAARGOS 1446 chromosome, complete genome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	============================	================================	==================
   1672365	    28	 100.0	    32	............................	TTTAAACTTTTACGTTCGTCGGGTTTGCGGTC	
   1672305	    28	 100.0	    32	............................	GGTGTCGATGATTCAGAGCCGGAACGACGCTG	
   1672245	    28	 100.0	    32	............................	GTGAAGAACGGGCAACCCGCGCCCGCCGCTGG	
   1672185	    28	  96.4	    32	............A...............	TGGTTGGTGGCGCGAATGTTCTGATCGCAGCT	
   1672125	    28	  96.4	    32	............A...............	GTAAATACATGGCGAGTATCGATAAGGCCGGG	
   1672065	    28	  89.3	    32	............A............CG.	CTCGAAGACATTGAAGGATATGGCAGAGCTCT	
   1672005	    27	  71.4	     0	..........AGA..A...A-.G.T...	|                               	
==========	======	======	======	============================	================================	==================
         7	    28	  93.4	    32	GTTCACTGCCGTGCAGGCAGCTTAGAAA	                                	       

# Left flank :   TTGCTCGACTGCCACTCTCTTTCGCAAATGCAACCTGTCTGTCGATGCCTTTCTGCTTATCTGGACACGCTTCAACGCGAGGTGGCAAAATCGATGACCGACTTTTACGTGGTTGAAAGCGCCGATGACCACCCCCTGAAGCGAAAAGAGTGGCTTTTAGAAGATACCGAAACGCTTTGTGATTACTGCCGCGCGTTAAATCACGTTTTGCAGATTTCACACGTTGATGGAGAGATGTGCCCTCATCTTACCGGCCTGCTGCACGACATCACGCACGCGATTGCTGACGATCTCAATGGCCCTCAGATCCAGGTCACAAACCGTTCCCTCTAACCGAACCGTGCCGGGATAGTTCCCGGCACAATCCAAAACCCTTTTTTCAGATGATTTTTAACGTATTGATTTTATTACGCGTAAATAACCACTCAGAAAAAAGGGTGGAAATGGCTGAATGTTGATTATTTTGCGTCGCAACAATAAGATAGCGCCGTAGCACTTCA
# Right flank :  TCGCCAACATTGCGCATTTCGCACTGAGCTTAATTGCCCACGCGCGCTCATTCACTGCTGCTGCGATATAGGCATCAATAACCATCCAGAAATACAAAAAAATAAGGCCGGGGATATCCCGGCCTTATTTATATCTGTACGCCTTCAGCGGCGAAATTAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGGATACGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGCGCGGTGACCACGTGACCGTTTTCCAGTTCTACGCGAAACATGGTGTTAGGCAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCAAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCAATTAAGTAAAGAATTGCGCGTTTAAAACGCAACAAAACAGTTTCGGCGCATTGCCCAGTC

# Questionable array : NO	 Score: 5.78
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.67, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTCACTGCCGTGCAGGCAGCTTAGAAA
# Alternate repeat :   GTTCACTGCCGTACAGGCAGCTTAGAAA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [6,7] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTTCACTGCCGTGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-7.70,-8.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [11-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [45.0-58.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.92   Confidence: HIGH] 

# Array family : I-F [Matched known repeat from this family],   
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