Array 1 16310-17113 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGDY01000102.1 Nocardia sp. NRRL S-836 P437contig3.1a, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================================================== ================== 16310 30 70.0 78 A.G.........G..........CC.TTGC CATTCGGATCTCGCGTGTCCTGTTCCCAGGCGGGTGGTCCTGCTCGTACAGCGAGGGCTTGGTCAAACGGAAGTACCC A [16330] 16419 30 76.7 27 TCG..T.........A.A...........A GTGGACGACGCCGCTGGAGTAGCCGCC T [16444] 16477 30 86.7 31 ..G....T...A.................A TCTCACGCACGCTGTCGATGTCGTTCCACCG 16538 30 86.7 31 ..G..................A...C...A TTAACGGCAACGACAACCCTGCGGGCTTCGC 16599 29 93.3 31 .....................-.......T GACCGACGGCCGCCTTCACCGCGTCCAGCTC 16659 30 96.7 31 .............................T ACTTCCCCGGCAGCCGAGCCGAGCTCGCCGC 16720 30 96.7 31 .............................C TGCACCTCGGCGTCTCGGTCGAGGACCAGGA 16781 30 100.0 31 .............................. GGTCGCGCAGTGGCGGGAGCTCGCTCCCACC 16842 30 93.3 31 ............................AC TGCGGGACAAGAGGGGGTGTGGCGCCGCGGG 16903 30 96.7 31 ....................A......... GCAAGTTGGCCGTTGCTGCCCAGTTCGCGAA 16964 30 100.0 31 .............................. GCGACGACGCGGTGTCGGGCATGGTGTTCGA 17025 30 96.7 31 ..............T............... TCGCTGTGAGTCCTGTATCTGCAGGACACCC 17086 28 83.3 0 ...........--...G........C...T | ========== ====== ====== ====== ============================== ============================================================================== ================== 13 30 90.5 35 GTTCTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : CCAGCACCAGATCGAACAAGCGCGAAGCCACATTCGCCGTGTCCACCACGTGGCACAACAGCGGATGCGGAATACCGCGACCCGCAGACTTTCCCCAAGCCGCCCAGGTCGACGGCTTGTGACCATCAACGCTCACCGCACTCCACACCCGATCAGACGCTCACCATCACGACAAGCGAGAGCGGCCATGAAAGCAGATCACGAAGCATCGTTCGATGAGATCCGGAGGCAGTACGCCATTCGGATCGAAGATCACCCACTTGCACTAAAGATGCTCTGATCTTCAGGTAATTTCGACTTATCGACAGTTCAGTCAACTGGACCGGAGCCTCCAGAGAGGCTGTCAGCGGTTAGGTACAGCTATCTTGTTCCACTGTCACTCGCCTCAAGGGGCCTCTGGACGCGCAACCGATCTTTGACAACTCCACAACGGATAAGCAGTCAACCTTCGCTTACACCTCGGTGGCTCAACCGCCTAGCAGGCTGCAGCTCTGGTGTAG # Right flank : TCGGCGGGCACGTCTGCCAAGACACATCATCTGACACGCTTAGCCCTCTGATCATCTGGGCACGGCCGCACAGCCATGACGGTCGCCGCAACGCGCCTACCCGGTGACGTGGCTCCGGTGCCGCACTGGGCAGGCACCCACAATGATCTCTTCGGCATGAGGAAGCACTGTGGTCAGGACGGTTAGCGCGTCCTGTGGCATCGTCCCACTGTCCAGCGCGCAGCTTTCGACCAAGGCAGAACCAACCACCGACCTGGCCCGCCTCTACACCCGCGTGGGCCAAGGTCAACGGGCGTTCGTCGTCATGGACACCCTGTTCACCGCGGTCTCGCATCGCACCATTGTCGGTATCCCGTGCGAGGATCGGACCAGTCGGGGAGGGCTGGTGTGGCGACGTTCGCGGAGGTCAGGGCACAGCTGGATCAAGTCATGGGGATGGCTGACCGGGCCATTGCGATGTTGCAGCTGGCCTGCGAGTTGGCCGGTGAGGCCGAGGGCCT # Questionable array : NO Score: 4.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.53, 5:0, 6:0.25, 7:-0.27, 8:1, 9:0.26, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 19340-20039 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGDY01000102.1 Nocardia sp. NRRL S-836 P437contig3.1a, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 19340 29 96.6 32 ............................G AAGTACGGGTCCGGGGCGAACAGGACCAGCGT 19401 29 100.0 32 ............................. GCCTGGATCCGGCGCTTTACCCCGAGAGCGGG G [19418] 19463 29 100.0 32 ............................. GCGCACCACTCCTTGCGGTAGATGCTGTCGCC 19524 28 96.6 31 .................-........... CGCCGGCACGTCGCGGTTTGGCCGGCTTGGC 19583 29 96.6 32 .............T............... GCACCCTCGACGCCCCGGATCCCCTTGCCATG 19644 29 96.6 32 .............T............... GCACCCGAGGTGGTCGCGGACCTGGTGGGCTG G [19666] 19706 29 96.6 32 .............T............... GATGGCGGACTTACGCGCACCAAGCGCGACGT 19767 29 86.2 32 ........TA...T..............G GGCCTCATCTCGGGCGACAACAGCGGGTTCAA 19828 29 93.1 32 .............T..............G TACGACTGCCGCCAGTCACCGTCGGACGCCAA 19889 29 100.0 32 ............................. GCGCCGATCCCGCTGCCTCTGCTCGTGCAGGG 19950 29 89.7 32 .....................A..G...G CACTGCGGTACCGAACGACCTGCGTTCTCGTC 20011 29 82.8 0 ............T........A..G.T.G | ========== ====== ====== ====== ============================= ================================ ================== 12 29 94.6 32 GTGCTCCCCGCGCACGCGGGGGTGATCCC # Left flank : TGGCAACCGTTCGAGACGTACTGACAGGCAGTCACAGCGCGCTGAGCAGAACGCAGACCGTGGAGGCGAAGTTGTACAGATGACGAATGACGGTCATCGTGGTCGCCGCCTGCCCCGTCGGACTGCGGGGACACCTCACCCGCTGACTGCTGGAGATCTCGCCCGGAGTCTTCGTCGGGAAGGTGACCGCGCGAGTCCGCACCCTCATGTGGATCCGCGTCGTCGAGATGGTCAGCACCGGACGAGCGATCATGGTCCACGCAGCGGACAACGAACAAGGGCTCTCGTTCCAAGTTCACGACCACAACTGGAAACCGGTCGACTTCGAGGGAATCACGCTCATGCTGCGCCCCGCGGCCGACACTGAGAACGCCAGCGAACCGTCAGAGCCACGGCGACAAGGGTGGAGCAACGCCAGCAAACGGCGACGCTACGGACGCTGACCGACAAAGATGAATCAAAAACACACCTCACTCGAACAAACAGGCTGGTCAGCAAGT # Right flank : GCCGGGAATCGTGGAGTTGCGCGTCCATGCTGCGTGCTCCCCGCGCGGCGCCGAGCGCCGGTCTCGCCCGCGGGGCGGGCCCGGCGGGGAATGGCCACTGAGCAACCACCGCGCCGGCTCGACGAGCTTGGAACTCGGCGGCCATGACATCGCAGCCAGCACGAGTCGCCGGGGCACACCGGCAGACTTACACGCCTGGGGCCGCCTGCGCGGCGCCGAACTCAAGCCGTCACCGTGACTCGACCACGGCTCCGGACACGGCGGCCAGGCGACGCCCACCGGACTGCGAGTCAGTGACGGGTGAGGCCTCGGGCGGCCGCGTGGACGGGCTGCACTGGCCGGGCTCTACTGCGTGATCAGGTGCGCGCCGAACACGCACTCAGCCGCGGTGAGGGTCTTCGCCGGCTCGCAGCGCAGGCTCAGCCCGGATCAGACCATCAAAAGCGGCGTGGCTGGCGTAGCCGCGCAGCGCCAACTCGGCTGCGGCATGGACTATGCGG # Questionable array : NO Score: 5.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGGTGATCCC # Alternate repeat : GTGCTCCCCGCGCTCGCGGGGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 160532-159770 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGDY01000107.1 Nocardia sp. NRRL S-836 P437contig33.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 160531 37 94.6 34 ..G..C............................... TTGTTGTAGCTGTTGCCCAGCAGCAGGTACCGGT 160460 37 94.6 36 ..............T.....T................ CTGGCGCCAGAGTCCCCGGCGTCGCTGGCTTCGGTG 160387 37 97.3 36 ..G.................................. GCGTTGTTCGAGGCGTTCGGGCCGTGCCGGTTCGCC 160314 37 100.0 36 ..................................... GCGATCGAGCGAGGCGTGATCATCCACGGGTCGATG 160241 37 100.0 38 ..................................... GGCGAGTACGACGAGATCGTCGACTCGCGGGCGTTCGA 160166 37 97.3 34 ...........T......................... TGGCTCGACACGACGGCCGGCGGCGACACGTTCA 160095 35 94.6 35 ...............--.................... GCGATCCAGGAGGACCGCCGTGGCTGAGCGCGCCG 160025 37 100.0 35 ..................................... TCCAACCCGGTGCCGCCGCGAGGACGGGCCGATGC 159953 37 100.0 37 ..................................... GCATTGTAGACGTCGCTGAACAGGCGCGTGATGTCCT 159879 37 97.3 35 .........................A........... TGCCGGTCGACGTCGCCGACACGATGACCAAGCTC T [159866] 159806 37 91.9 0 ..........A........T..G.............. | ========== ====== ====== ====== ===================================== ====================================== ================== 11 37 97.1 36 GCAGCGCTGGGCGTCCGCGCCCAGCGAGGATCGCAAC # Left flank : TTCGCCCGCAGCATCAGCCCAGTCCTGGCACAAGCCCACGCCATCACCCGGATCACCCAGACGACCGAGAAGGACATCGAAAGCGGCGAGTCCACCGAGATGGGCTCCAAGTGGACCGTCCACTACGGACTCTACCGGGCGTACATCCACTACAGCGCAACACGCGGTATCCAGACCGGTGTCTCCGAGGAGGATCTCGCCACCTTCTGGACGACGCTGGAGAACCTGTTCGAGCACGACCGCGCGAGCGGCCGCGGCGAGATGGACGTCAAGGGTCTCTATGTCTTCAGCCACGACAACGCCTACGGGCGTGCGCGAGCCAGTCAACTGTTCAAACATGTTGCTGTCCAACAGTTGGACGGCGTCGTTACGCCGCGTTCGATCGACGACTACAAACTCGACGTCAACCATGACGGGCTGCCAGACGGCGTTACGCTGAAGGCTCTCGTGTAGTGAGCTTGTGAGGAGGAACGACCAGCCGGTAATCAGATCCGCCAGAT # Right flank : AAGCGATGGTTCGGTGACGGCGATGTCGTTGACGCGAAGCGTTCGGCCACGCCACTCGTCCTGTTCGCGCGGGTAGAGCGGGGCGTAGGTGAACAGCCTCCATCGGGAGATCGCCGGCTGAGGGCCGGTCTCCGCGGGTTCGGCCGAGGTATGGGCTGCACGTAGCCGCGCATGGCGCGACGGGGTGCGCTGGAGACGTAGAACAAGCGCGGTGGTCGGGTTGCCGTAGTCGTATTCGACTTCCAGCGGGTCAACGAACGTGACGGTGTGAGGAAGCTGACTCGACCGTCTGCGAGCGAGTCCGTTCACACTGATCGTGCTGGAGCGGAAGTGGAGCAAGACCAGGAGCACAACGTCATCGAACGGCGCTCAACGGCGCCGAACTGCGGCTAGTTGCGTTGGGCCTATTGGGGTTCTAGTGTTTGTGCTGGCAGGAGTCCTCTATGGACCAAACTGGCAGTGTGAGGGTCAGGGGTTCGAGTCCCCTCAGCTCCACAATT # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCGCTGGGCGTCCGCGCCCAGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCTGCGCCCGGCCTCCGCGCCGGGCGAGGATCGCAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.30,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 169601-168990 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGDY01000107.1 Nocardia sp. NRRL S-836 P437contig33.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ===================================== ================== 169600 38 100.0 32 ...................................... CTGCTTGTTCAGCCAGGCCTGCACCCGCTCAC C [169563] 169529 38 92.1 36 ..............C.....C................G AGGTCGAGGTCCCGGAGCCGGCAGGCGATCTCCCAG 169455 36 94.7 33 ...............--..................... CGGCGAAAGCAACGGCAACGCAGCTGCCGTTGG 169386 38 100.0 27 ...................................... CCACGTTCGGGCGCAAGACCAAGGAGC 169321 38 78.9 36 ..CC.AACA.CA.......................... CCACGTTCGGGCGCAAGACCAAGGAGCGCCCCAACA 169247 38 100.0 34 ...................................... CCCCGTCAACAGCGACGGCGTCGAGGACGAGTTC T [169210] 169174 38 97.4 37 ....................................A. GCAGCGACAGCGCGGCGCGCCCGGCGTTGTGGCGGCG 169099 38 100.0 34 ...................................... TCAATCAGTGCGTGGGCGCGTCCGGGTTGGTGGT 169027 38 89.5 0 ............T....T..............C....C | ========== ====== ====== ====== ====================================== ===================================== ================== 9 38 94.7 34 GCAGCGCTGGGCGTTCGCGCTCAGCGAGGATCGCAACA # Left flank : GTAGTCGCTCCAGGATCGGTCGCCCGGTCGGGCGAATGTCCCTGGGACTTTCGATTGCCTGCAGACGTGCTGGCGTTCCGTCTGCGCTGTCCCCTTGTTGAACGCGTTTCGCGCGGATGCTGTCTGTTTGTGGGCGACCGCGGTGGTCACGCCGGTGCGGTGTGTCGGGTCCTGTGGGGCAGGTTGAGCGGGTGTCGACTTCGGCGTGACGCTGCGCAGATGTGAGCTGTGCACGTGCTTGTTCCTGTCTACTTGTTAGCCTCGGCAGGAGTGCTGGCTCAGTCGTGGCGCTGCGGTGTTGTCGATCTCGCTGCTTCTGTGGTTGTTTGGCGCGACGATGCTCTGGATGCAGTTGGCGTGCCGCAGTTGTGGTTGGGAACCGTAGGCGTGGTGTGACACGCCGTGAGGTTCCGAAGCGTGGTGGCGGCGTGTTGTGTCCGCAACGACGATATGGCGATCAACGAAGATGCTCGTAGGATGGTTTTGCCTGTTCGGGCAGG # Right flank : AGGACGAGGAGGAGTGCTCGTGCTGCACGTCGGACAGAAGCGGCGGGCGTCCATACGCAGCGGGCATCGCATTGCTCATGCTTTTTTCATCTCGAAGAGTGACAAGTTGTTTATGTCATCAAATTGGTAATTAAACGGCTTTATCGTCACTGAATGACTAGTCGATCTGCGTTTATGGCTTCACTCGAACGGGGTATCATCGCCGATGAAGGATCACTGCCGGCGTTGCGATACTGCGGATCGTGGGCCGGATGAGTGAGGGCGCAAGCGTTAGCTGATCTCTTTGGGGTGAGCCGCACCCCTATGTAGAGAACAAGAAACCCAGGTCACGGTACTGTCCCGCCATGTTCTGGCGACGGCGACGTCACGCCGGTCGCGTGCTGCGAGCCCTGACAGCACGACCCGACCTTGAGTTCGATACCGCTGCACTTGCAGAAGCAGCAGCCCTTAGTCCTGCGCAGTTGTACCCGGTGCTTGTGCGCCTACGCCGGCTGAATCAG # Questionable array : NO Score: 2.80 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCGCTGGGCGTTCGCGCTCAGCGAGGATCGCAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.70,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,1.01 Confidence: MEDIUM] # Array family : NA // Array 1 212118-213003 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGDY01000069.1 Nocardia sp. NRRL S-836 P437contig16.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================ ================== 212118 29 96.6 33 ............................G TCCTGGGTGCTGGCCGTGAAGGTCTTGGACTGG 212180 29 100.0 32 ............................. GACGGGTCAGGGTTCTTGACGGCTGGTCTCAT 212241 28 89.7 21 ......................C..-..A GAGCCTGCTGCGCACCGCCTA Deletion [212290] 212290 29 96.6 32 .......T..................... AACGGCGAATTCGTGGACGCGAACACCGGCGA 212351 29 96.6 32 ........................A.... ATCGTGCGGTCCCTGGGGCTGTGGTTGGTGTT 212412 28 96.6 32 .....................-....... ACCTCGACAACGTGATCGGAGCCGGACGATGT 212472 28 93.1 32 ................-.......A.... TGGTCGAGGGCCGGGTTAGGCCACTTCCAGTT 212532 29 93.1 30 .............A..............T GCGGCGTCGAACGCCGGGTTGCAACGCGAG A [212543] 212592 29 89.7 32 ............TA..............G TCCCCGCCTGCATCGGCTAGGCCGCAGCTCCA 212653 29 82.8 33 .........C.......C...A...C..G CCCGGTTAACGACCTGGCGCTGGTGCGGCTGGA 212715 29 79.3 108 .......T..........AA......TTT CCCGCTGTTCCTCGGACGCCGATCCTGTCAGGCCGCGGCAAGCTGGTCCGAGGGCTGCGCGAGGGTGAAAAACGCACCTCGCTTGCCCGAACAGCCTGGTCAAGAAGT A [212739] 212853 29 79.3 32 ..T........G.A.......A...C..G CAGCTCCTCAACCGGCTATCGGTGCCCGGCGC 212914 29 86.2 32 ..T........G.A.......A....... GACAACGACTGGCCGGCACCGGACCAACTGCA 212975 29 79.3 0 ..T..T.....G.A.......A......T | ========== ====== ====== ====== ============================= ============================================================================================================ ================== 14 29 89.9 37 GTGCTCCCCGCACGCGCGGGGGTGGTCCC # Left flank : CTGTACGAAGTAGCAAGTTGAGGACATAGAAAGATTTCTTCCATCATGTCGATGCGCTGAGTGATGGCGACACTGGATCCGAATAGTGTTGCTCTGCGGACCCGCGTAGATTCGCCTCCCAGCAGGAGCACCAAAGGATGAGAACAGAACCGACCAGTAGTTTCACACAAGTAGCCTGTCGTGGAGTCATTCTTCAAGCTGTCCTTGTCTGAGTAGCATTCTGGGTGGATGCGGATCCATCCTCGTCTCATTGCTTCAAGCCGAGGGACGGTGGAACTGGACTCGTCGAGCTCTTTGCCCGTCGCCCATCAACGCCGCGCTACTGAAGGAGGCTGAGGAGCTGGTGGCGATCTCGGCAAGACGAGCTGCCCCTGAACAGGAACCCGCTCGTGCACCGATCTGGCCACGTAGCGTTGCAAGGCGACGATCAGTGCTCAGTGCCACTGAGCAACTTGAAGCTAGATCGGTACTAGGCTTCGCAACTGCGCTGGTCAACAAGT # Right flank : TGCCACGAACCCTTGGCGGTGGTGTAGGTGCGGCGGAACTGCCCGGTGGCCGTGTCGGGTGCGGCCGGGAACAGTTCCAGGGCACTGCTGAGGGCGCCAAGGATTGCCGTGGCGGAGCGAAGGCGCACAGCGGGTTCCTTGTCGCGGCAGATGCGAGTCATGACCGTCAGCAGCCCGTCGTCGGCCAGGTCGGTCGCGAACCGCTCCACCACGACCGTGTCCCGCGCCCACAGCGAGTTGGGCAGGCCGGACCGGTTGTGGCCGAGGAAGCCCACGCAGCGGTCGAGCGAGTCGAGGCCGTCCTCGGCCATCACCGAGGGCAGCGGGGGCAGAACCGGGCAGTGGGACAGCCCTCAAGGTCACGGTGTCAGCGCTTCGACGGAGGACACCGCCGACTTCGGTCCGGTTCCGTTGAGTGGCCGGTCGCCCCAGCCCGTAGCGCCGAGGAGGGCGTTGTTGCGGCGCCGGATGGTGGCGGGGACGGTGGTGTTGTAGACGGT # Questionable array : NO Score: 2.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:-1.5, 6:0.25, 7:-0.55, 8:1, 9:0.15, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGGTGGTCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-26] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //