Array 1 510615-513510 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIBJT010000002.1 Salmonella enterica strain SC-Z1910-0004 NODE_2_length_785649_cov_143.831892, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 510615 29 100.0 32 ............................. GGGCACGCGGAGGTCTACGGCGAATATATTTA 510676 29 100.0 32 ............................. GCGCTGCTTTCCTGAAGAGTGCCCATGCCAAA 510737 29 100.0 32 ............................. ACTCATTAACTCCCAGTTCATGCCGTGATCAC 510798 29 100.0 32 ............................. CGATCTTCTCTTTTGAAAACCACTGTTGGGAT 510859 29 100.0 32 ............................. GCAGTAACGGGAAATCCAGTGGCGGCAGTATT 510920 29 100.0 32 ............................. GCCACCGGTGCGGCATACAGTGGGATCAATAT 510981 29 100.0 32 ............................. ACAAGGATATTCTCGTCTACGTTATCCAGTTC 511042 29 100.0 32 ............................. GCCGACGCCATCCGGATAGCGCTGTCAGCTGC 511103 29 100.0 32 ............................. ATTGCGGCAGAGGGTGTCAACACAGAGGGCGT 511164 29 100.0 32 ............................. AGCCGTGAAACGCTAATCGCGCTATTGAGCGA 511225 29 100.0 32 ............................. TGTCCACCGGCACGACCTATTCCAACAGCGCC 511286 29 100.0 32 ............................. CTCCAGTATTTAAAAAGCTGCTGATCGCGATC 511347 29 100.0 32 ............................. GAGATCGACCTCTCCCATGTTGTGCCGGTTAC 511408 29 100.0 32 ............................. CTGTTTAGTAGCGAGATAGTCAAACGGGAGTA 511469 29 100.0 32 ............................. TTTGTCAGCTCGTTATGTGGGGTATAGCGATA 511530 29 100.0 32 ............................. CGCATCGCGTCAGTGCGTCTGGGTGACGTTCC 511591 29 100.0 32 ............................. CCGGATCAAACATTGCTCCAGATTGCCACTGA 511652 29 100.0 32 ............................. CAGTAATTGAGGCAATTAGCGCGGCCGGCATC 511713 29 100.0 32 ............................. AATCTACTTCCTGCCGGGTCATAGGGGTACGC 511774 29 100.0 32 ............................. TTAATTCAGAAATTCAGGCAGGGGCAGCGCGT 511835 29 100.0 32 ............................. CCTATAACCGACGAGGGCAAACGCCGTGCGCG 511896 29 100.0 32 ............................. TTTTTGCGTCAAGTCCCATTTCATCTGCCTGG 511957 29 100.0 32 ............................. GCACCGGCACTGCGGTCAGCACCGCCAATATG 512018 29 100.0 32 ............................. GCAGTCCACGACTACAGCCCCGGGCAGCGGTT 512079 29 100.0 32 ............................. GGGGGCCTGGTCGGGAACGTAGATATCCCGAA 512140 29 100.0 32 ............................. TGAAATTGTCGTGCCAGCGCCACCTTGATGAT 512201 29 100.0 32 ............................. CTACGCACGCTGATTAAGGTCACGTGCGGTTA 512262 29 100.0 32 ............................. CCGGGATCCGTCATCGGTCGTGGTTCACTGCA 512323 29 100.0 32 ............................. ACGATAGAGATCTGGCAAAAGGCTGTTATTGC 512384 29 100.0 32 ............................. GGACTGATAAATAATTCATACGTTGAAACGGG 512445 29 100.0 33 ............................. ATAGCGTATCGTGGAAATCTGTAGCAGACGAGC 512507 29 100.0 32 ............................. AAATTTTCAGCATCGCCATCTGTAGGCTGCCA 512568 29 100.0 32 ............................. AGTGAGGAATAGCGCGGGCTGGGGATGGTATT 512629 29 100.0 32 ............................. ACGGGTATTCCAGATTAATTCCGGTCGGTGTT 512690 29 100.0 32 ............................. AGGGCGTCAGCCTCGGACGAATCGATAACAAT 512751 29 100.0 32 ............................. GCAGGCGTTCAGGCGCTAATTAGCTCTACCGA 512812 29 100.0 32 ............................. AAATGATTAAGGTGCTAAAAGCGCTTAATAGT 512873 29 100.0 32 ............................. TGGTTAATCGCGGCGCCACGATATCAACAGGA 512934 29 100.0 32 ............................. ACTCGCGAATAATCGGAAACCAGCCACCATCC 512995 29 100.0 32 ............................. GGCGCGCAGATTCTCGGCGGCTGGGAAAACAC 513056 29 100.0 32 ............................. GAAAAGGCAGCTCCAGTCTGGCACCTGCATGA 513117 29 100.0 32 ............................. GATGAAAGAAGCGTTAAACGCCTGCTGGACCC 513178 29 100.0 32 ............................. TTTTTCGGCTGTATCCAGCGTTATCCCTTGTT 513239 29 100.0 32 ............................. TTTTTCGGCTGTATCCAGCGTTATCCCTTGTT 513300 29 100.0 32 ............................. GTAGTGACTTCCGGCGACACAGATCCTGTTAA 513361 29 100.0 32 ............................. ACCAACCCCCGATACCCGCGAAGAAGTGGCAC 513422 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 513483 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================= ================== 48 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCACTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATTACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 530122-532042 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIBJT010000002.1 Salmonella enterica strain SC-Z1910-0004 NODE_2_length_785649_cov_143.831892, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 530122 29 100.0 32 ............................. GATGATTTAAACACCCAAACGCTGGGAATAAT 530183 29 100.0 32 ............................. TTCCTGGACACTGAGACCGGATCTGATTGGGT 530244 29 96.6 32 ............................A ATTCGACGACTTTCCACTCCTGAGAGTGTGTC 530305 29 100.0 32 ............................. TAGATGCTTGTATGTGGGTGAGAGAAGAACAA 530366 29 100.0 32 ............................. CCCGCATCAACGATTTGTTGACACATCCAGAG 530427 29 100.0 32 ............................. CGCAATTAACTCACACTATTGCGCTGATATAC 530488 29 100.0 32 ............................. CGCTTCATCGACAGCGTGTTGTCGCGGTGCTT 530549 29 100.0 32 ............................. GTGGGATGGAAAAAATGGGAGCCAGTTTTAAA 530610 29 100.0 32 ............................. TATGCCACGAAAGCGGCGCGTTTCTAGCGGAG 530671 29 100.0 32 ............................. GTAGCCTTCAGACACTTTAGCCAGGTTCCCTA 530732 29 100.0 32 ............................. AGCGAAAAAAAAGACGACGAACTCGTCACAAC 530793 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 530854 29 100.0 32 ............................. CTGGCGCAGGTTCGCCTTTCGGGCCTTTGAGT 530915 29 100.0 32 ............................. AATAAACGTCTTTTGCTAGGTAGCATTCTATT 530976 29 100.0 32 ............................. CGCGCCACCGAGCTATTCGGGCCGCTCGGTTC 531037 29 100.0 32 ............................. GGATTTTATGACGACTGGCCGAAATCGTACAA 531098 29 100.0 32 ............................. AAAAAATACTCTCCAAAATGAGTCAGTCCGAG 531159 29 100.0 32 ............................. AATCCACATCCTGTTTAGCTCCATATAGCCCC 531220 29 100.0 32 ............................. CCGAATTTCTCCGCGAACGCCCACCAGTCGCG 531281 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 531342 29 100.0 32 ............................. TCGTTTTTTTTATCGGTGTGGTTCGGTCGTAA 531403 29 96.6 32 ............................T GGCGCAACGTTCCCTGAGTCCCGGTTAATAGA 531464 29 100.0 32 ............................. ACAGACCAGACAAATAACGTATTTTCTGTTGA 531525 29 100.0 32 ............................. GCGGAGATCCGGAGGAGCTATTTCAGGTCATA 531586 29 100.0 32 ............................. TGCGGCCACGCCCGCGTAGCAGATAGCCGCCA 531647 29 100.0 32 ............................. AATAGCGTTCCTGACGTCTGAATTTCATATCC 531708 29 100.0 32 ............................. TCGATATCGAACATTTGATGCGTATTGCGGGG 531769 29 100.0 32 ............................. TCGCTTATCTTGAAATCGTCATCGGTCAGACC 531830 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 531891 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 531952 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 532013 29 93.1 0 A...........T................ | A [532039] ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACACGTTGCTGGTATCCGTCTTTTTTACCCAGGTTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //