Array 1 27255-34000 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHNZT010000024.1 Corallococcus sp. M34 NODE_24_length_124228_cov_17.305896, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 27255 37 100.0 34 ..................................... CGCCGCGGCCCACGGCACATCGTCGGCGGCGGCC 27326 37 100.0 34 ..................................... CGGATACGGAGGCGGTGACGGGCGACTCTCACGG 27397 37 100.0 32 ..................................... AGAAAGCCGACGGGGTGTCCAGCGAGGGCACC 27466 37 100.0 32 ..................................... CGTACAGCAAGGAGCAGTGGACGAAGTATCAG 27535 37 100.0 34 ..................................... TTTCACGGAGGAGAGCGCGTCCATGAGGTTGCCT 27606 37 100.0 34 ..................................... CACTCAAAGATTGACGCCGCAATCCACAGGCTCA 27677 37 100.0 35 ..................................... CATACCGGCGTCTCGATGTCGAGGGGGCGAGGATG 27749 37 100.0 33 ..................................... AAAGGAGCAGGCCATGGATGAGTATACGTCGCG 27819 37 100.0 33 ..................................... TTCATATGAACCTCACGGCAGCGTGTGGGAGCT 27889 37 100.0 32 ..................................... GCCAGGGCATCCGCGAGCCGCGGGGCGTCGGA 27958 37 100.0 34 ..................................... CAACAGGCGCCCGCGTCGTTGGATGGCCGTATCC 28029 37 100.0 37 ..................................... GAGGAAGAGCGCTCGAAAGCGGAAGCGGAGCGCAAGC 28103 37 100.0 34 ..................................... GTCTCAGCTTAGCCATGCCCCGAATATCCACGGG 28174 37 100.0 34 ..................................... AAACGCTCTTTCCTGTAGGGCGTCCTCCTCTTCG 28245 37 100.0 33 ..................................... GGGCGCGGGCTCCGCAAGTGGACTCACCTCGAC 28315 37 100.0 35 ..................................... GGGGCCCCCGCCCCCTCCCCCGCTTCTGCCTCGCG 28387 37 100.0 32 ..................................... CAGACAGCGCGAGGAGTTCGCGCGGCTCGCGC 28456 37 100.0 33 ..................................... CCCGGTTTGATGGTCGCGGAGATTGGCGACATC 28526 37 100.0 34 ..................................... CCATGTGTGGTGCTGGACCTGACGCGGCCGTTCG 28597 37 100.0 34 ..................................... CGCAACAGGCCCACGTCTTCGAGCTGCGCGATCT 28668 37 100.0 34 ..................................... TGCCACCATCGGCGCTTAGGCCACATAGTCAACA 28739 37 100.0 33 ..................................... GTTCCCTTGCCGCCAACGACATGCGCCTGCGTC 28809 37 100.0 35 ..................................... CTAGCCACGTGCAGGATCGCCCCCATGGAGCACCA 28881 37 100.0 33 ..................................... ACTGCCAAATCGCGGTGGTCGAACGACTTCGAC 28951 37 100.0 33 ..................................... CCGTTCGGCGTATGGCTGGCCAGCAGACCCAGC 29021 37 100.0 32 ..................................... TCGGTCAGAAACAGGCTCACGGCCGACATGTT 29090 37 97.3 34 ...A................................. TGCTCGGAGAAGCTGCGCGAGCCGTGGACACGCA 29161 37 100.0 33 ..................................... GATCAACAACGTGAGCACCGGCTGGAGGCCCTG 29231 37 100.0 33 ..................................... GATCAACAACGTGAGCACCGGCTGGAGGCCCTG 29301 37 100.0 33 ..................................... ATATCGTTGAAGTATGCACACTGCCGGAAGGTG 29371 37 100.0 32 ..................................... AGGTCGAGGAGGAGCTCCCGCTTCTTGGCGAC 29440 37 100.0 33 ..................................... CGGCGCACTTCGCGCCGGCCGGACAAGGGGCTG 29510 37 100.0 38 ..................................... ACCGGCCACAACGCCCCGTTGCCCTGTGTCCACCCCTG 29585 37 100.0 33 ..................................... GCCGTGGCGGACACTCCCGACACCAACGAATTG 29655 37 100.0 33 ..................................... CGTGGGGAGTCGGGCGTTCTCGCCTCTACTCCA 29725 37 100.0 36 ..................................... TGCTCCCTCACGCAGTGCGGGCGCAGATGGTCACGA 29798 37 100.0 33 ..................................... TGCTCGCCGTGCAGCGAGCGGAACGCGAGCCGC 29868 37 100.0 34 ..................................... GTCTCGATGCCGGTGAGGTCGCTGACGTCGTCTC 29939 37 100.0 35 ..................................... AGCAACCCGCGCGCCAATGTCCTCCCGAGCGGAAA 30011 37 100.0 33 ..................................... CAGAAGCCGGCCGACTTCGCGCGCGCGTCGGTC 30081 37 100.0 32 ..................................... CATCAGGTGCGCGGCGGCTGGCAGCCCGAACA 30150 37 100.0 35 ..................................... TGTCCCGGATTCGCAGTGCTCATGCCTTGGCCTCG 30222 37 100.0 34 ..................................... CGCGGATGGCCCCTGGCAGCTGAGCCTTGGATTC 30293 37 100.0 34 ..................................... TCCGCGAGGCCATTGGCGGTAATGTGCCGCGCTG 30364 37 100.0 34 ..................................... CCCTGCGTGGTGCTGGACCTGACGCGGCCGTTCG 30435 37 100.0 32 ..................................... TCGGGGCCGGTGGTCGCCAAGCAGGTGAGCAA 30504 37 100.0 34 ..................................... GCCAAGCAGTCCTCGGTCTGCCGGATCCGAGCGA 30575 37 100.0 33 ..................................... ATCGCAGCACACAGGGGCGCGATGTGCTCACGC 30645 37 100.0 35 ..................................... GCATCCGTGCGCGGGACATCCACGCCCGACAGGTA 30717 37 100.0 36 ..................................... ATCTCCTCGGCATTGGGCGGCTTGCCGGTGAGGTGT 30790 37 100.0 32 ..................................... CAACGTCCGCGAGAGCGAATGGTCAGCCAGGA 30859 37 97.3 33 .............................G....... GCGGTACGCCCTATGAGGCTGACTATGAGAGTG 30929 37 100.0 33 ..................................... AACGCGAGCGAATGGGAGACGGTGAAGGCAAGC 30999 37 100.0 35 ..................................... GGTTCGGCACCCGTGGTGCAGACACGTGGTTCATG 31071 37 100.0 35 ..................................... GCACCCAAGCTGGATGAGCAGGAAGAGACGCTCCG 31143 37 100.0 33 ..................................... GACAGGTTCCCGGGCCTCATGGCGGCGCCCTCC 31213 37 100.0 33 ..................................... TTTTTCGGCGCGCAGTTTTACAAGGAGTTGCGG 31283 37 100.0 34 ..................................... CCGTGCGTGAGGGTGCCAAGGTTGGGCAGCCGAC 31354 37 100.0 33 ..................................... CGCCGTGGTGGTGGGCGAGGTGCCGAGGAGTGA 31424 37 100.0 33 ..................................... AGGGCGTCGTCACCGCCACGGCCGCGCTGGGCG 31494 37 100.0 35 ..................................... CTCTTCGGCGCCACCGCATCCGGCCAGCATCCCGA 31566 37 100.0 33 ..................................... CCAGCGGGCAACACGTTCGCGGAAATCGGCATC 31636 37 100.0 35 ..................................... CAATGCCGTCCCGGAGATAGGAGTAGCCGCCGCAC 31708 37 100.0 36 ..................................... CCAAACAGGCCCATGCCACCCTCCTACCGACGACGA 31781 37 100.0 33 ..................................... CCTGGCGCCGGCACGCCGTCATCATGACAACTT 31851 37 100.0 34 ..................................... GAGCTGCGCGACACGTTGAGCTGGCTCTGCGGGA 31922 37 100.0 34 ..................................... AGAATCTGCAACACCTCTGGCAGGTCAGCATGCT 31993 37 100.0 33 ..................................... CTCGGGTTCACGGCCTGGGAGAAGTGCTAGAGA 32063 37 100.0 32 ..................................... GACGGCAAGTGCAAGTTGCCGCTGCCCGCGTT 32132 37 100.0 34 ..................................... CGGCCGCTGCGGTCGCGGCGGCCTTGCTCCTGAA 32203 37 100.0 34 ..................................... CTGAGGTCCATGCTGGCCTCGACTGAGGATGAAG 32274 37 100.0 32 ..................................... CTGCGTGGTACCAGGACCTGATTCATTCGTGT 32343 37 97.3 35 .......................T............. GATGGGCCTCCCCCGGCCGACCAGAGGGAGGCCCT 32415 37 97.3 36 ...................................C. TTGAGGCGCCCCCGGCGGATACGCCGTCGGGTTCAA 32488 37 100.0 32 ..................................... CACTGGACTGACCGTGGGTCGCCGTGGGTCCG 32557 37 100.0 33 ..................................... AAGCGCAGCCACGCGGTCCGAGCCGATGGCATG 32627 37 100.0 32 ..................................... GTGAGGCTGTGCCCGAGGTTGGCCGCCGCGTT 32696 37 100.0 34 ..................................... GACGTCCTGGCTCACAGCGTCGCTTGGAATCCCA 32767 37 100.0 32 ..................................... GCGTTCAGGTTGAGTCCAGCCGTGAGCTTCGT 32836 37 100.0 33 ..................................... GGTCAGTCCGCGCGCGATGCGGTGCTCGACGCG 32906 37 100.0 35 ..................................... ATCGCCGCCGCGCGCTGCACCTGCTGCGGAGACGC 32978 37 100.0 33 ..................................... AACAAGAGTCTGTCCGAAGCGCGCCGCAGCGAA 33048 37 100.0 34 ..................................... CGTGGCGCTTGGTTGCGACCACGGAACGCATCAT 33119 37 97.3 32 .......................A............. GAGGGCTGGGACAACAGTGCGACGGGCCTTGC 33188 37 100.0 33 ..................................... TTGTTTGACGGCAGCGGCAACCCGTCCTCATCG 33258 37 97.3 34 ...............T..................... GCACGATGTGGTCGATGCAGAACTCTGTCGAGAT 33329 37 97.3 33 ..........C.......................... GCCTCCGCGTCTGGAGCAGGAGCAGAACCGGCA 33399 37 100.0 34 ..................................... GCGTACTCGGCCCATGCCTGCTCTCGTGCCCTGA 33470 37 100.0 35 ..................................... GCCCGGCGGGCGCACGGGCAGGGCTTCGAGGTGGC 33542 37 100.0 32 ..................................... ACGTCCGGGTGCTTGCCGCAGCGCAGGGTGAA 33611 37 100.0 34 ..................................... CAAACGTTGATGCGCGCGGACATCGGCGCGTCGC 33682 37 97.3 32 .................................C... TGGGACTGCGAGACGCGCCACATGTCCGGGGA 33751 37 97.3 34 .............................G....... TCCGCGAGCGGCTCGAACTCCGTTCGCCAGACCG 33822 37 97.3 33 ....G................................ CGCCGCGACAGCGGCAGCCGCAACGCCAGCTCA 33892 37 94.6 34 .........T.....T..................... GACATGGACGCGTGCACGGTTTATCGCTGGCGCA T [33907] 33964 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ====================================== ================== 96 37 99.6 34 GTCGCTCCTCGTGACCGCGAGGAGCGTGGATTGAAAC # Left flank : TCGACGAGCTGCTCGCGGGCGTTGGCGGGGAGGTTCACATGGCTGGTGGTGTACATGGCGCACGTCCCTCGGGTTTGGGGTTCCAGGTCGAAGGGTGGGGATTCCCGCTGGGCCTGGCAGGCCCGGCCGCCCGCCTGCTGGGCCGCACGGACGAGGGGCGTCTTCTGGACAGTGCAAGTCGTTGGAAAGGGAGTGTCCCCATTGACCGCACTGTTGGGTTCCTATCCCCGCCGAGTGGGTGCACGCGGAAGCGAAGGGGATGCTATGGCGTCACGGGGGAGCAGAGCGCTCGGCGGGCGGGACGCTGGTGAGGGTGAAGGCGAGCGCGAACCTCTCCCGATGCGAGCTGCGTCGAGGGTTCGCGCTCTTTGAAATCGCCAATAGTCATCCAGGGTTCGGGCCCGAGCCCGTTCTATTCCGTCGCGCGGAGGCGCCGCGGAAAGGAGGTTCGCGGAACCCGGTCAATTTCCGCAGGAGTTCCAGTACATTGGCGAGGCAGA # Right flank : TACCCGTGCAGTCGGACTCGGAGTCAGGGCCAATCGTCGCCCTTCGTGTCCTCGTGGTTCTCGGCCCCTGGGCCAGGCGCGACAGGTCGGGCCCGGTGCGGTATGCGGGGAGGCGATGCTCGATTCTCTGTCCCTGGATGACTGGGGCGGCACCGGTCCGGTGCTCCACTTCGCCCATGCCAATGGGTTCCCTCCTGGCTCCTATCGTCAGCTCATCGAGCGTCTGACGCCGCACTTCCATGTCTACTCGTGGCGCGGCTCGTGCTTCGTGCCGGGCTCGGAGCCTCGCTCGCTTCGTCGTTGGGAGGAACTCGCGGACGAGATGGCTCAGCTCCTCCTCGACCGAGGATTCGAGCGCATGATCGGGCTTGGGCACAGCATGGGCGGCGTGGCCACGCTGTTTGCTTCACTCAAGTACCCGCGGCTCTTTCGCTCCGTCGTGGCGCTGGAGCCCGTGCTGATGACGGGTGCTCGGACCTGGGTGCTTCGCGCCGCATCGG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCGTGACCGCGAGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCTCGTGACCGCGAGGAGCGTGGGTTGAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.10,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 4674-134 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHNZT010000043.1 Corallococcus sp. M34 NODE_43_length_64529_cov_19.076069, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 4673 37 100.0 37 ..................................... CGCTGACCGCGTGGTGACGAGATGGTGACCGCAGGCG 4599 37 100.0 33 ..................................... TGGGCCGTGTTAGCATCAACAACAAGGACCTTG 4529 37 100.0 35 ..................................... AAAACACTGGTGAATCAGGTCTTGATACCACGACG 4457 37 100.0 34 ..................................... GTGCCGGTGGACATCATCACCAGCGATGGGCCGC 4386 37 100.0 33 ..................................... GCGCGAACCGGCAACCCCTCGTAACCACTCGCG 4316 37 100.0 33 ..................................... CGACTTCGTCCGCATGGTGTGGGACCGCGATGA 4246 37 100.0 34 ..................................... GACGAGAATCTGCTGCGTCGACTCCAGGTGACGT 4175 37 100.0 33 ..................................... TTCAAGAAGTTGGGTCGGGTGGTGAAGAAGGTC 4105 37 100.0 33 ..................................... CTGTTTGGATTGGGCGCCCCGGCACCGGTAGCG 4035 37 100.0 33 ..................................... CGTATCTACACCGCGCGCCTTGCTGCTGACGTG 3965 37 100.0 34 ..................................... GCCCAGGCAGCTCCGTAGTTGATCAGTCCCGCCG 3894 37 100.0 32 ..................................... CCCGCCGTGCTCTCACGCCTGGAGGCTGCGGA 3825 37 100.0 33 ..................................... CAGGAGCGGGTGGGGTGGGAGTCGAACCCACAA 3755 37 100.0 35 ..................................... CGATTCAGCTCCCACTGGAGCGCGCGCACAAGGCG 3683 37 100.0 32 ..................................... GCCATGTCGTAGGGCGCGCCATCCAGCACGCC 3614 37 100.0 32 ..................................... GATAATGCCCCCCAGCCATTGCGTGAGGAGAC 3545 37 100.0 33 ..................................... TGAAGGATTTTTGGATTCTGGTGGTTGCGGTTG 3475 37 100.0 34 ..................................... CGTCCTTGCGGTTGTAGGTCTCCCCACCGCGAAC 3404 37 100.0 33 ..................................... ACCCTATCCTCGTGGTGGACTGGGGTGGCCATG 3334 37 100.0 32 ..................................... GCACACCACTCCGGGGCCGCGAAAATCTCGGG 3265 37 100.0 33 ..................................... TGCGTCGCCTCCACGCTGCCGGCGGGCATGCGC 3195 37 100.0 34 ..................................... AGGAGCTCCAGCGCGAGCAGCGCGCGGCCCTGGC 3124 37 100.0 31 ..................................... CACCACCTCAGCCGAAGAGGGGAGGGTGCTC 3056 37 100.0 35 ..................................... CGCACGAGGGCGATGAAGGTCAGGTGGGCGGTCTC 2984 37 100.0 34 ..................................... TCCACGCCCGACGACGCGTCGGGATCCCGCCAGA 2913 37 100.0 32 ..................................... CGTGTGTCGGGCGATGCTTGGTGGGTCGAGAG 2844 37 100.0 34 ..................................... CCTGGGGCCGCTCCGGCCATCGCTGCACCGGCTG 2773 37 100.0 32 ..................................... TGCTTGCGATATGCGCAAGCTGCCTTGTCCCA 2704 37 100.0 34 ..................................... AGCATCACGCCACTCCGACACGCTCTGTCCGCCC 2633 37 100.0 33 ..................................... TCTCTCCCGCTGCGCGCCCGCGCGCTCTCCTCG 2563 37 100.0 34 ..................................... CAGGCGGAGCACCAGCTCCGTTCTGAGCTTCATG 2492 37 100.0 34 ..................................... GCTCACCTGTCGGCGGCGACGCGTGCGGCGGGTG 2421 37 100.0 31 ..................................... CGGGTCCACGAGTGCGGACCCCTCTCGCATC 2353 37 100.0 36 ..................................... GCGGTCCTGAGTCAGAACGCCCTGGACGCGAAGGGT 2280 37 100.0 33 ..................................... GCACGAGGGAGGCCGCATGACGACGTGGCTGGT 2210 37 100.0 34 ..................................... ACTGCCAACACGCCGTCCTCAACCAAGAGCCGGA 2139 37 100.0 32 ..................................... CAGACACGAAACCCAACCCAAAGAAAACCAAG 2070 37 100.0 32 ..................................... TCGATGATGCGGGCCGCATAGGGGTCCGCGCG 2001 37 100.0 34 ..................................... CGCGAGTTGACCAGGAGCGGCTCCGCGCGCTCCA 1930 37 97.3 32 .............................C....... TTCGCGTGGGCCGGCCGCGGCTGCTGGGTCAG 1861 37 100.0 31 ..................................... GACTTGCGGTGTAGTGCGTAGGCGCGACGCG 1793 37 97.3 34 ...................................C. GCTGGGCGAGGCATGGGCAACAGCAACGCGGCTC 1722 37 100.0 33 ..................................... ACATGTCGGCAATGGATCGTGTCGCGGAGCATG 1652 37 100.0 34 ..................................... GCCCATGGGACGTGGTGAAACAGGAGCCGGTTGA 1581 37 100.0 32 ..................................... TGGATTGCTCCTCCTGCGTAGTGCGCCGGCCG 1512 37 100.0 33 ..................................... GTGAGACGTCTTCCTGCGTCTCGCGCTCGGCGG 1442 37 100.0 34 ..................................... GTCACTCGAGGCCTCCAGTCTCAGCGCCGGCCCA 1371 37 100.0 32 ..................................... TCACGACGGCCGGTATCAGCGCCCTCACTTTG 1302 37 100.0 34 ..................................... GAGGTCATCGCGTTTGCGCTGGAGGACGCCACCA 1231 37 100.0 34 ..................................... TCCTCCTTTGGACCACCAAGGACGGTGAGCAGCA 1160 37 100.0 35 ..................................... CATCGCTTTCGAGCAGAGCCGGACAACGGTCCTCA 1088 37 97.3 31 .................A................... AGGCAGGGTGCACGGTCGAGGTGGCATGGAG 1020 37 97.3 33 .................A................... CACGTGCGGCGCGAGGCTCGGCCGCACCACGTA 950 37 97.3 33 .................A................... TTACGCACGGGCGGTTCTCAAGATTCGGGGAGC 880 37 97.3 34 .................A................... GCGGTTGGTGCGCTGAGTGACGATGGCCGAGCGG 809 37 97.3 34 .................A................... TGAAAGTGCTGCTTGTGTCTCCCCTCTCGCTCTA 738 37 97.3 34 .................A................... CGCGAGATCCTGCCATATCTGCGTGAGCGCCCGG 667 37 97.3 34 .................A................... ATGGGCACGCACACAATCGACTCGACCTCGCGCG 596 37 97.3 34 .................A................... TCCGCGCAGCGCCCTGAGCGCTCTTGGTCGGGTG 525 37 97.3 34 .................A................... TTCGGGGTGCGCTTCTTCTTCGTGGTCTCGGTCA 454 37 97.3 33 .................A................... TTCGCAGCGACGACAACAGGCGCGGGCGCTTCG 384 37 97.3 35 .................A................... GCGTCGTACTTGCTCGTGAAGTACCGGCTGTGGGG 312 37 94.6 35 .................AA.................. TACGTTTTGGCGCAAGTCGGTGATTCTCGGGCGCC 240 37 94.6 33 .................AT.................. CACACCACGTCCGTCCACTCGATGTTGGTGTCA 170 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 65 37 99.3 33 GTCGCTCCTCGTGTCCGCGAGGAGCGTGGGTTGAAAC # Left flank : TGAAGAAGCTCACGGTCTTGATTTGCTATGACGTGCGCGTGTCGGACTCGGAGGGGCCGCGGCGCCTGAGGCGCATCGCGAGAGCCTGTCGGGACCACGGCGTGCGGGTCCAGTTTTCCGTGTTCGAGTGTGTCCTGGAACCGAAGGACTGGGTGGTGCTCCGAGCGCGGCTGTTGAGCGAGTTCGACGCCGCCGGTGACAGCCTGCGGTTCTACTTCCTGGGCGCGGACACGGCGAAGCGTACCGAGCACCACGGTGTCCGGCTGCCGCTGGATGTCGAGGGGCCGCTCATCCTCTAGACTGCACGGCTGCCGATGGCGCGCGCGCGAACCTCCGCCGGTGCGGGGTTCGTCGAGCGTTCGCGCTCATTGAAATCAACAATAGTCGTCAGGGGTTACAGGGGAGTGGAGCCCTATTCCCGGAGCGCAGCGGCCTCGAAAATGGAGGTTCGCGGAAACCGGCCCAATTCGTCAGTAATTACGGTAAGTTAGTCGGGCAGA # Right flank : CTGGTTCTGGAGTTGCCCCCGTCAAATCGGACACGGTCAGAGGGGTGATGCTGCTCTTCGGTACTCGATGGGGGAACGCATCTTCAGGCCCTTGTGAGGGTGCACGTGATTGTAGTCGTCGAACCACGTGGGCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCGTGTCCGCGAGGAGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCTCGTGACCGCGAGGAGCGTGGGTTGAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 90243-85063 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHNZT010000034.1 Corallococcus sp. M34 NODE_34_length_91051_cov_17.176257, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 90242 37 100.0 32 ..................................... CGCAACCCGTAGCCTGTGTTGACGGCGTCAAA 90173 37 100.0 35 ..................................... CTGTTGCGAGATTCAGCCTGCGCCCGCAAATCTGA 90101 37 97.3 36 ...............T..................... GTCGGGTTGCTCGCGGCTTGCTCCACGCTGCGCTGC 90028 37 100.0 33 ..................................... GAGTTGACGGTTACCTCGCGCCGCGCAGAGCGC 89958 37 100.0 32 ..................................... GCGATTGTCGCGGATAAATAATCTCCCGGGTT 89889 37 100.0 32 ..................................... CAGGCAGCGTGAGGAGTTCGCGCGGCTCGCGC 89820 37 100.0 32 ..................................... CTCACATCCACGTCTTACCTCGGCATGGACTC 89751 37 100.0 36 ..................................... GACGCCTCTGGAATCGACGGGCTAACGAGCAGCAAA 89678 37 100.0 34 ..................................... TCAAGGCACTCTACAACGCCGCGCGCTCGGGCAG 89607 37 100.0 31 ..................................... TGCGTCTGCGCACTCAGTGCGCAGCCAAGCC 89539 37 100.0 33 ..................................... GCGACCTGCCCAGGGGCGAGGCGTCCCCGGTTG 89469 37 97.3 33 ....T................................ CAGCGAATTACACCACCCAATCCGGAGCAAATC 89399 37 100.0 33 ..................................... CTGGGACAGCAACAGCTCGTAGTGGGTCACCAA 89329 37 100.0 33 ..................................... AGGGTCGCGATGACCTCCTTGGTGACAGGGTAG 89259 37 100.0 33 ..................................... CAGCGAATTACACCACCCAATCCGGAGCAAATC 89189 37 100.0 33 ..................................... CGCGCTGATGGCCAGCGCTCGGGCCCAGCGCGG 89119 37 100.0 35 ..................................... TGGCGCCATGGACGTTCCAGACCTTCAATCCGAGA 89047 37 100.0 32 ..................................... CACCGTCACCACATAGGGCACGGTGAGGGGCA 88978 37 100.0 32 ..................................... CGGACGCGCCTGTGTCGGCAGCTCAGCGAGGA 88909 37 100.0 34 ..................................... GCGGTACACGACATCGCTCGGCCCGAGCGCTCGC 88838 37 100.0 35 ..................................... TCGTTCACCCCAACGCGGAGCTGGGCGCTCAGCTT 88766 37 100.0 33 ..................................... ACGACGTGGCGCCACAAGTTTCCGAGGCGCTCC 88696 37 100.0 32 ..................................... GGTTTGGCACCCGAGGCGCGGACACGTGGTTC 88627 37 100.0 34 ..................................... CACGGCCTGCTCCTCTCGTCTTCACCTGGCACCC 88556 37 100.0 33 ..................................... TGTGCGGCGAATGGACGCCGCTTGGAGGTCGTG 88486 37 100.0 32 ..................................... TGGATGGGCTGGAGTGGCAGGCGGATGCCGTG 88417 37 100.0 35 ..................................... GCCATCGCGCGCGCCGTGTCCCAGCGCGACAGCAC 88345 37 100.0 34 ..................................... TCGACGGTGGAATTGGTCATCGACACGGCATACT 88274 37 100.0 34 ..................................... GCCTCGCCGCAACCACTCACGAAACAGCACAACA 88203 37 100.0 35 ..................................... TCTGGGAAGGCATCCATGCTCTTGGCGCGCAGCTT 88131 37 100.0 27 ..................................... CCGCCGCGGCCGCGGCCGCGACTCCGA 88067 37 97.3 34 .............G....................... ATCACCCGGTGGTTGGACGCGCCCAACTACACGG 87996 37 100.0 33 ..................................... GACCCGAGCATGCAGGGCCTCACCTCGGCCGAT 87926 37 100.0 35 ..................................... CCGACGGGCAACACGTTCGCGGAAATCGGCATCCG 87854 37 100.0 34 ..................................... CGAAGGGGACCCAGGTTTTGGAGCGCGACGTGGG 87783 37 100.0 34 ..................................... GGATATCGTGACTATGCACCTACCCTAATTATCG 87712 37 100.0 33 ..................................... ATGAGTGACAACTGCTTCTCAAACTCAGACTTC 87642 37 100.0 34 ..................................... CTCGGGGCCATCCTGTTGGAGCTGTCCGTCGACT 87571 37 100.0 34 ..................................... TCGCGGGCCCAGCTCACGCGCTCGGCGGGCGTCA 87500 37 100.0 35 ..................................... TTCGCAATCTCGCGGCGCAGCTCCTGACGCACCCG 87428 37 100.0 33 ..................................... GCGGCGCAGCGGCGACTCTGGGCGTTGATGTAC 87358 37 100.0 33 ..................................... TGGAACGACTACCCCGGGCGCACGCACGCCCAG 87288 37 100.0 35 ..................................... TCCATTCCCCTGGAGGCCACGCGCCAGCTCTACCG 87216 37 100.0 32 ..................................... CAGGTCGGCGCAGGTGGCGACACGTTCTCCGC 87147 37 100.0 34 ..................................... GCGGCCAAGCCATGGCCGCCCCAATCAACGACGA 87076 37 100.0 34 ..................................... TACGAAGAGACGTACCTCGCCCGGCAACGGCCGG 87005 37 97.3 33 .........A........................... GTACTTCTTGCGGTCCACCACCGAATGGACCGG 86935 37 100.0 34 ..................................... AGCCGGTCGGTTGACGCCGTCAACGCGTGCGTCG 86864 37 100.0 33 ..................................... CCGTATCCGAGGCTCTTCGTGAGGTCGAGCCCC 86794 37 100.0 34 ..................................... ATGCGCCACGACCGGTTTACCGGCCTCACGTGCG 86723 37 100.0 31 ..................................... AGGTTGCCGGCTGGTACTGGGTGCGCGGCAC 86655 37 100.0 34 ..................................... ATGTCCGAGGACGTGTGGCGCCGGCATGTGCCCG 86584 37 100.0 34 ..................................... CGAGGGGCCTCAAGCTTGCTGCGACATCCGTACG 86513 37 100.0 33 ..................................... GCTGTCATCCTCGTGCGGCGGGGGGCGGGCTCA 86443 37 100.0 35 ..................................... GCGCCGCTCTTCGTAGCGTTGGGCACGCCTGGCAC 86371 37 100.0 33 ..................................... CTGTTGCGCGCAAGGTCGAGCAAGGCGTCCACG 86301 37 100.0 33 ..................................... CCTGGGACGCAGGCCGGACCTCCATGTCCGAGC 86231 37 100.0 35 ..................................... GATGCCGCTGAGGTGTTCCGGACAGTCTTGCGACG 86159 37 94.6 33 .......................A........A.... GATCATCGCGATGACGCGGAGCGAGCTATGAAC 86089 37 94.6 34 .........T...................T....... CAATCCGCGCGCGCATCCCTCTGGTTGCGGAGAA 86018 37 100.0 34 ..................................... ATATAGGCCCAGACCTCGTCAGCAAAACAGAGGA 85947 37 97.3 33 .........T........................... TCAAAGTCCAACTGACGATCTCGACGACGAGCT 85877 37 97.3 32 .........................C........... AGGACTCGCTCGCCCAGCACAACGCCCTCGTT 85808 37 100.0 35 ..................................... TACAACGCGGGCCTTGATGCAGCCGCCGCGGCCAA 85736 37 100.0 33 ..................................... AAGATCATTCGCGATATGGCCTTGGAGCACACC 85666 37 100.0 34 ..................................... TGAAGATGGTCCGCGAGCTGGCTGACAAGCAAGT 85595 37 100.0 34 ..................................... TGCCTTCCAGGCGGCCCGTAGAGAACCTCTCGGT 85524 37 100.0 34 ..................................... CTGAGCCGCAACCCACAGGTAGAGGCCGTCACCA 85453 37 97.3 36 .......................T............. CATGCGCAGGGACACGCCAGCACCCACTGCGGACAT 85380 37 100.0 33 ..................................... CGCCCAGTTGTGCCACGCCGCGCAGTGTGGCTA 85310 37 100.0 33 ..................................... GATGAATCAGCGCTTCCTCGGGAGTCGCGAAGA 85240 37 97.3 34 .......................T............. AAGCAGGCGGGGCACGTGCTGAAGGCGGCCACCA 85169 37 89.2 33 .C......C........................G..T TTGCCCGCGCTACCGGGCTCCTCCTCGAGGTAG 85099 37 89.2 0 ...A..................G...........G.T | ========== ====== ====== ====== ===================================== ==================================== ================== 74 37 99.3 33 GTCGCTCCTCGTGTCCGCGAGGAGCGTGGGTTGAAAC # Left flank : GCCTCCGCCACGGCCTTCAAGGGATACCGCCCTTGGGTGGCAAGCTGCGCTGCGAGGAATGTTTTTTTGGGCGGGCGAGCTCCAATGCTTCCTTCAGAATCTCGTTCTCCATCGTCTTCTTGCCCAGCAACCGCTCCAGCTCCTTCACCTGGGCCTGGAGGCGCTTAACCTCGGACTCGGGGACCACCGATTCTTCTGTGCCTAGGCTGGACATAGTCCCTTCCTCTACCAGCCTCCTCCAGTGGAACAACATGCTCGCCGACAGTCCGTACCGGCGAGCCACCGAGGAGACGCTCTGCCCGGGGGCCATCGTCTCTTCCAGAAACCGGCGCTTCTCATCCGCACTGAAGCGTCGACGACGTCCTGCTCGGGCTGGCTGGATGACCTCTACTTCGTGTGTCTTCGCGTCCATTCCTAGGCTGGTCCTATGCGTTAGCGACCTGTCCGTTTGAAATGGGGGCTACACCAGGTTCTTCATCGGCCTCTTTGGCATCGGCATT # Right flank : GTCAAGGCGGGGTTGGGTGGTCGCTTTATTCGTGGCGTCTGGCGATGGGCTCAGGGCTTTGGGGTGGATTGGGTCATCCGGTGATAGGTGATCGGCTTGTCTGGGGTGTTCTGCTGTTGCTCTGTGGGCGTGCTGCCGTTCTTCACATAGGTCTCGCTCCGGATGAAGGAGTCTTTCCCTCTTAGTGTCATCCAGAAGGCGTGTTGATGTGATTTGTTTTTGACCTGCAAGTTCGTTCCATCTCGGAAAATGAAGGACAGCTTGTCGGCGCTGCTTCCCTTCTCCAGTTGGAGACGGGGGGTGTTGCCTTGCGGGCAATAGTGGTCCGCCACCAGGGCGTCGCCATCCAAATGGTAGAGCGTCAGGGATTCGCGTCCGGGCGCGAGCGTCCAGGTCTCGACGAGCGTGGTGCCTCCCGCTGTGAGCCGGTACGTGACGCTGTGCGTTCGGCTGTCCTCGAACTTTCCTTCCCAGGTCCCCACCAGGGTCGTCAGTTGGTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCGTGTCCGCGAGGAGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCTCGTGACCGCGAGGAGCGTGGGTTGAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //