Array 1 62998-61889 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_NXCR01000020.1 Moraxella catarrhalis strain 4840991N 4840991N_NODE_2, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	============================	=================================	==================
     62997	    28	 100.0	    32	............................	AGAGGATTTGCAAGAGCAATTAACCGCTCAGC 	
     62937	    28	 100.0	    32	............................	GTTATAACATGAAGATTTTTGATTGGGTTTTT 	
     62877	    28	 100.0	    32	............................	AAACGGTGAGCGGACACACTTCACAAGTGCGA 	
     62817	    28	 100.0	    32	............................	GAGTTAAATCAAAGCATTGCTGATGCTCAAAG 	
     62757	    28	 100.0	    32	............................	ACGTTCTGTTTCTTGGTCTGCTCGTTTGGCTG 	
     62697	    28	 100.0	    32	............................	AAAAGACTATACAGAAAAACACCATGCTAAAA 	
     62637	    28	 100.0	    33	............................	CGTGCAACACGCATCTCTGCTTGATATGTCAAC	
     62576	    28	 100.0	    32	............................	ACGCTCCAGCTTGATCTTATCAATGCGACTTT 	
     62516	    28	 100.0	    32	............................	AATAGACAGTTACATTTTTCTTTTTTCGTGGT 	
     62456	    28	 100.0	    32	............................	TTTGGGCAAGCAAGCCTAGCCACACATTCAAA 	
     62396	    28	 100.0	    32	............................	CAAGGAAAAAGATTCAGATTTGCAATTATATT 	
     62336	    28	 100.0	    32	............................	AACAGTACTTAACGCAACATGAGCAAGTTTAT 	
     62276	    28	 100.0	    32	............................	ATACTGATTGTACCATTTGCAAATGCGCTAGT 	
     62216	    28	 100.0	    32	............................	AAGCGACAAAATATCACCTTCAAAATAAAAGT 	
     62156	    28	 100.0	    32	............................	ATCGGCAAAATCGGCACAATTGAAAGCAACAT 	
     62096	    28	 100.0	    32	............................	ATACAATTTATAAATCTGGTTAAAGTCTTGGA 	
     62036	    28	 100.0	    32	............................	ATAGATGTGGTTGCCCATTGCAGACCAAGCTC 	
     61976	    28	 100.0	    32	............................	GTTGAGCTGTATCCTCTGATTCTCTTATTGAT 	
     61916	    28	 100.0	     0	............................	|                                	
==========	======	======	======	============================	=================================	==================
        19	    28	 100.0	    32	CTTCACGACCGCACAGGTCGCTTAGAAA	                                 	       

# Left flank :   TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATTACTTGTTATTTCTTATTATTTTGGTTTATACTAACT
# Right flank :  TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCCGCGCGTGCCAATGCCGAAAGCTATAATGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAATCTAGAGCGCGCCATTAAAGATACTGAAGAGACAGGTACAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCATCCTTGAGAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CTTCACGACCGCACAGGTCGCTTAGAAA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [5,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-7.10,-7.40] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: R [71.7-83.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.51   Confidence: HIGH] 

# Array family : I-F [Matched known repeat from this family],   
//