Array 1 30755-26163 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPIA01000051.1 Acinetobacter baumannii MRSN 3405 20_dA, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 30754 30 96.7 30 ............................A. TTCCGCAACTCGCTACTTCCCTGATGCAGA 30694 30 96.7 30 .............................G GAAGATTTGCTTATGGCGTTCTGGAAAGAA 30634 30 96.7 30 ............................A. TGCTTAGTAATGCGCAAAAACGGTCATCCA 30574 30 93.3 30 ............................AG CAGAAGAACGCAGAAAAGCGAGAAGCTTAA 30514 30 96.7 30 ............................A. CTTGAAAGGCTTGAGCTTAAAGCTTTTTAC 30454 30 96.7 30 .............................A CAGCTGGCCGCGTATATAACGGCTCAGTAT 30394 30 93.3 30 ............................AC AACTCGATGTTGGGTATGCAGAGAGCCTTG 30334 30 93.3 30 ............................AA ACTTACACTTCTCAGCGTCAAACCATGCGT 30274 30 93.3 30 ............................GA TTACATCCACGAAAAGAGCTTTAATCAGGA 30214 30 96.7 30 .............................G GCAGAACTTTTCATGACGCTCATTCTCTAA 30154 30 96.7 30 ............................A. ACCTATCAACGTTAAACCAACGATTGCCAG 30094 30 93.3 30 ............................GA TGCAGAAGATGTTTTAGAACGTTATGACGA 30034 30 96.7 30 ............................A. TGGGATGTTATGAATATTCGACATTACCAA 29974 30 96.7 30 ............................A. CAAAATAGAGTTGGCCTTCCTGTTTGGCCT 29914 30 100.0 30 .............................. CAAACGCTTCAACCAGCCACGTCTTTGAAG 29854 30 96.7 30 .............................C TTCCGCCAAATTCTAGGAGGTTAACATGCT 29794 30 100.0 30 .............................. GTGCATACTTATTGCCGCCAGCAAGTAAAC 29734 30 96.7 30 .............................C CTTCGGGAGGTTTTCTTTTGGGGTGATCAT 29674 30 93.3 30 ............................AA GTTTCGGCCTAATGGATGCGGTCTTGAAAA 29614 30 93.3 30 ............................AA GGACTATCCGTCCCTTTGCCGTTTTTGTAC 29554 30 93.3 30 ............................AC CCTCGGGTGGTTTTTTATTGAGGTGATCAT 29494 30 93.3 30 ............................AG TGGCGCGTTCAAGCGTGCCATTGAAGCATA 29434 30 93.3 30 ............................CA GAAGTAAGTCTTGCAGATGCACGATCTAAA 29374 30 96.7 30 ............................A. CCGCCGATAAAACCCTTACCCGATACGCCC 29314 30 96.7 30 .............................C AGCTCCCGATTCAACATCCAACAACATGCT 29254 30 100.0 30 .............................. TGAAAGACTTGAACGTGGTCAAGTCCTCCT 29194 30 96.7 30 .............................G TTGCGCTGTTTTTGAACGTGTAATTGGATA 29134 30 93.3 30 ............................CC AAAGCGGTTAAGCCTCCAAGATTTGCATAC 29074 30 96.7 30 ............................A. GGTAATACAATTCAATCTCACTACAAGAAT 29014 30 96.7 30 ............................A. ATATTTTACGTGTTGATTCAACTACGGGTG 28954 30 100.0 30 .............................. TGGGGTAACTGGTGCCTTTAAGTTGTTTTG 28894 30 100.0 30 .............................. CCAAAGTCTTGTTCAATATCTTGTTGTTGA 28834 30 100.0 30 .............................. GCTCATCAATACAGCTACAAGAAAATTTGT 28774 30 93.3 30 ............................AG CATAAGCATAAAAATTATGTGTGAATATCA 28714 30 93.3 30 ............................AA TATGCAACAATAGGAAATTGCTCAGCATCT 28654 30 93.3 30 ............................AG TTACATCATTGCTTTTAGTCTTTTCTATCT 28594 30 93.3 30 ............................GC ATAGGCATTTACTCCCGCTGTGAGTGAAGG 28534 30 96.7 30 ............................A. CTGCAAGACCACTGATAGTTGTTGAGAATC 28474 30 96.7 30 .............................G TGGCGTAGCGTTTCCAAAGTTGCCCATTGG 28414 30 93.3 30 ............................CC AAGCGTGACCAACTCACCAGTTGTCACAGG 28354 30 100.0 30 .............................. TTGAAACTTATAGGCTTGGCTTGGGTTATC 28294 30 96.7 30 .............................G AAAGGGATTTAAAAGCAGTTACATAAAATT 28234 30 96.7 30 .............................G AATTGGATTTCGTAAATCATTGAGCAAGTT 28174 30 93.3 30 ............................AG CATCAAGTAGATCAGCAGTTACCTGTTCAG 28114 30 100.0 30 .............................. CTGTATTAGTGGCCTTCATGTGCATTAAAA 28054 30 96.7 30 ............................A. ACATGCCCACGTTGAAAATCGGGTACCAGT 27994 30 96.7 30 ............................G. ATTAAAACTGCTTATAAACTTTCTTAAATC 27934 30 100.0 30 .............................. GAAAAAAAGCATCATATTGTTCGGGGCAGG 27874 30 96.7 30 ............................A. TTTTTCTGTTAACTCTAAAATACCCTTCCG 27814 30 96.7 30 .............................A AAAGTAGAGAGTGGCGGTGATTCACTAAGA 27754 30 96.7 30 ............................G. TGTCTGATCCGACAATTTGGCTGAGTACGT 27694 30 100.0 30 .............................. GTACAACAATATGACCCGTATCGATGTAAC 27634 30 93.3 30 ............................AA CAATTGCCTGAGTGGTATGAGCCACCAGTA 27574 30 100.0 30 .............................. TGATAGCTAAAGTAGAAATCAAAGTCGCAA 27514 30 100.0 30 .............................. TTATTGCTGGGAATGAAACATCAAAGCAAA 27454 30 100.0 30 .............................. CTCATCGTGAAGGTTTTGCAAATATGCCTT 27394 30 96.7 30 .............................G TCCGAAATTCAGATGGTGAAGTGACATATG 27334 30 100.0 30 .............................. CAACCTACGCAAGTATTATGGGAACTATTT 27274 30 96.7 31 ............................G. CTTTATCAGTTACGATGGCATGAGTTTTTGT 27213 30 96.7 30 ............................A. ATCTCGCAGATTTGGACAAGGTCACGAATA 27153 30 100.0 30 .............................. CAACTGTGTAACCAGATTTCGCTTTAAAAG 27093 30 96.7 30 ............................A. CAATGTAATGCTCAGGCGATGCCTTATCAT 27033 30 100.0 30 .............................. GGACAAAGATTATGACTGAGAAAGACGAGA 26973 30 100.0 30 .............................. GGATGTGCAATTTGGTCAAGATGTGGGGAG 26913 30 93.3 30 ............................CG AACACGACTTGAACCAAAGTTAGAAAAATA 26853 30 93.3 30 ............................CA ACTAAAAGCTATTTATGGGGGTAAAAATTT 26793 30 96.7 30 .............................G TCATTGGCCGGCCATTCACAACCCCGATAA 26733 30 93.3 31 ............................CC AAAAAATGAGGAAATTGGACAATATCCAACA 26672 30 96.7 30 .............................G TTGAACGAGTTATTCATAAGTGCCCGAAAT 26612 30 93.3 30 ............................AG CGGAAATCTTTTCAAGTGCGTAGGGGATAA 26552 30 100.0 30 .............................. CTCCAAGTAAAGAATAAAACAATATACCGC 26492 30 96.7 30 .............................C AAGGCGATCCACCTCCCGTCACAGTCATTT 26432 30 93.3 30 ...........T.C................ TGCTAAAAGGATTTATGCTTTAAAATACTT 26372 30 86.7 30 .......A.....C...T..........G. TGGCGTACGGATAACGGAAGAAAGCATAAG 26312 30 86.7 30 .......A.........T..........AA ATAACCACGGTTGTGGTAAGTCACTTTTAC 26252 30 80.0 30 .......A.A.....T.T..........GC GTTCAGGTTGAGGAGATGAAGTGATGTGAT 26192 30 70.0 0 ...T...A...T.....T..C...AGCG.. | ========== ====== ====== ====== ============================== =============================== ================== 77 30 95.6 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : GGCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCATAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : AAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGCAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCGACCAACCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGTCAAAGCGATGGCGAAATCACCGATGCAAAATCGCAGTTACCAGAAGGTGTTATTATTGGCCGTACTTGCTTAAACTCATTAGAACTTGCCCAAAAAGCTATTGCCGATGGTGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAAC # Questionable array : NO Score: 5.32 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.28, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //