Array 1 340829-342250 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJOX01000001.1 Streptococcus gordonii strain A8 D8817_contig001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 340829 36 100.0 30 .................................... CGGCAGAACAAGTTTCCAACACCGTAGGTT 340895 36 100.0 30 .................................... CAACCTTGCCTTTGACTATGCAATCGACCT 340961 36 100.0 30 .................................... TTTCCTTTTTGTGGTGTGGTTGTATCGGCC 341027 36 100.0 30 .................................... GATAAATATATCTTCTTGCGTCATACCTTC 341093 36 100.0 30 .................................... CAAACACAAGTACACAAGTTAAGCACCCGA 341159 36 100.0 30 .................................... CATCTGCTAGCGTATATGCCAAAAATCGTT 341225 36 100.0 30 .................................... TTCACATCATGCCCGTTAGCGATATGCTCA 341291 36 100.0 30 .................................... GGTAGCACGGTAGCACTTAATGGTCATTAT 341357 36 100.0 30 .................................... AAATGAAACCGTCATGAAATGGCAAGACGC 341423 36 100.0 30 .................................... TTTACAAAATAACAATTACGAAAATTCAGA 341489 36 100.0 30 .................................... CTTGCTTCTCGTGAAGCACTGAATTACACT 341555 36 100.0 30 .................................... ACGCTCTCCACGAATCAGAATAATTCTGTT 341621 36 100.0 30 .................................... CACTCTCGTAAGCTCTGGTATTAATGTTTT 341687 36 100.0 30 .................................... TTCAGGTTATTGAAGATTATGGGATTGAGT 341753 36 100.0 30 .................................... TCACTATTTTTGAAATTACGATTAACAGCT 341819 36 100.0 30 .................................... CGACAACAACGAGAAGCCACCCGTTCAACT 341885 36 100.0 30 .................................... ATGGATCCGTTTCAATCCCATGGACGGAAA 341951 36 100.0 30 .................................... ATTAGTTGATTTGTGATTAACTGTTATGAT 342017 36 100.0 30 .................................... TATTCCCTTTCTAATGAGCATGCCACTTTC 342083 36 100.0 30 .................................... AAACCTGATGGTCGGAACGAAAGATTTTAC 342149 36 100.0 30 .................................... TGATTTCCCCTGCAATAAGTGTCTAACCCA 342215 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : ATCAACTCAATGACAAACCAGAAGTCAAGTCTATGATTGAAAAGCTAGTTGCTACGATTACAGAATTGCTGGCATTTGAGTGCTTGGAAAACGAATTGGACTTGGAATACGACGAAATCACCATTCTGGAGTTAATCGATGCACTAGGGGTCAAAGTTGAAACTCTGAGTGATACACCTTTTGAAAAGATGATAGAAATTGTCCAAGTCTTTAAATATCTTTCCAAAAAGAAACTCCTTGTCTTCATCAATGCGACCGCCTATCTATCAAAGGATGAGTTAGTAAATCTGATAGAGTATATCCAACTCAATCAACTAAGGGTCTTATTTGTCGAACCTCGAAAAGTCTATGATTTCCCGCAGTATGTGCTGGATCAAGACTATTTCTTGAACCCTGAAAATATGGTATAATAAGAGTAACAATTGGAACCTGACGAGCTGAAGTCTGGCTGGGACGAATGGCGCGATTACGAAATTTCGTGAGAAAAATTTTTCTACGAG # Right flank : CAATATTAAGATTTAATTCAATTCAACCATACTAGCTAGAGGTTGGTGGGGGGGCAAATGAGAAAGCAAATAGAAAAGTTATTAAACAGCGATATAAGCACAAGCGCAATCGCTAAAGGAGCAGGCGTTCCTTGGTCTACAGTAGCGGACCTTAGAAAAGGGAAAAACAGTATCGATAAAATGGCCCTGCTTACAGCCGAGAAATTAAATGATTTTGCGGAAGAATTAGAAGCGGAAAAGGACGATGAGTTTTACAATTAATCTATCCAAAAAAACCACCTAAATAGGTGGTTGTTTTCATTTATCACTGCTTACTAGAAGAAGAACTTGAGCTGCTTGAGCTGTCGCTACTGGATTCAGAACTGTCTTCTGAGGAGCTGGTGCTTTCAAATTGTTCTGGGTGGAGCGCTCGATAGCTTGGAGCATCAAAGAGATCAATAGTCGATTCGCCCTTGCGTTGGCTATAGAGACTGGTTGATTGGTCTCCTTTTTCTTCCTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //