Array 1 1000-2745 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCFI01000028.1 Lactobacillus helveticus strain IMAU80622 Scaffold28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1000 30 100.0 36 .............................. TGTGTAAATAGCATGGGGCATCAAGCATGGAAATTA 1066 30 100.0 36 .............................. CCATTAGCTCGCTCGAACTAATGAAGGCTTGTCTTG 1132 30 100.0 35 .............................. GAAGTCAGTGAATTGAACATTCATAAGACTAATGA 1197 30 100.0 35 .............................. CAAGGTTTCAGCTTATCAGATTCTCGCTTGTCGAG 1262 30 100.0 34 .............................. CTAAAATCTTCTAATTCTTGTTTTGTCTTAATTG 1326 30 100.0 36 .............................. ACAAACAGAAACATCCGTCCAAAAGAAAAGCAACTA 1392 30 100.0 35 .............................. TAGCTTCTTTTTGATACGACTGAGCTTGACATCAC 1457 30 100.0 35 .............................. TAAGCATGTGCCGTACTTTTTAACAATTTTAGCTG 1522 30 100.0 36 .............................. AGAGAATGCTGGCGACTTCAAGGATTCACTGATGGA 1588 30 100.0 37 .............................. GATTTAACAGTACCTGAATTAAAGCCATAACCGGTAA 1655 30 100.0 37 .............................. GATTTAACAGTACCTGAATTAAAGCCATAACCGGTAA 1722 30 100.0 37 .............................. GATTTAACAGTACCTGAATTAAAGCCATAACCGGTAA 1789 30 100.0 37 .............................. GATTTAACAGTACCTGAATTAAAGCCATAACCGGTAA 1856 30 100.0 37 .............................. GATTTAACAGTACCTGAATTAAAGCCATAACCGGTAA 1923 30 100.0 35 .............................. AAAAAACGAGCGTTAAAAAGAGACGTGATACCGCA 1988 30 100.0 36 .............................. ATGACTTGCTCACTCTCACTAAAGTGGGTGAAAATG 2054 30 100.0 36 .............................. TTATCAATGATAACTTTGTTATTTTGCTTGTTTTCA 2120 30 100.0 35 .............................. AAATGATTAACAAGTGATGTATCTTCAATCAATTT 2185 30 100.0 37 .............................. AAAATATCGAGCAGGTGGTATTTTTGCATGCGTTTGG 2252 30 100.0 37 .............................. TTCACAAAAGTTTCTACAGGTGTAACGTTATAGCTAG 2319 30 100.0 36 .............................. CCGTTTACTGTAGCAGCTTTGCCTTGACGTGCATAC 2385 30 100.0 35 .............................. TTAGATGACCCCGAAAAATTAGCTAATATGATTGA 2450 30 100.0 36 .............................. TATTACACAACTGTTCGGGATCACTAATATCAGTAT 2516 30 100.0 36 .............................. GAAACTACTGAGTTGCCATCGCCAGGCCCCCAATCA 2582 30 86.7 38 ............T...G.........G..T TTTTGAAAGTTTAATCTAAAAGTTTTAGTAGTTGGTAG 2650 30 83.3 36 ..C.........TC....G..........T AAAGCCGAATTTTACACCAACTTTACTAAATATGCT 2716 30 76.7 0 .A......C...........G..AA...TT | ========== ====== ====== ====== ============================== ====================================== ================== 27 30 98.0 36 GTTTTTATTTAACTTAAGAGAAATGTAAAG # Left flank : CCTATGAGCCTTATGTTATGGGATGGTAATAGATATGTATGTGATTCTGGTTTACGATATCGTAATGGATAAACAAGGTGCTAAAGTAAGTAGACATGTTTTCAAAATATGTAAAAAGTATTTAACTCATGTTCAAAATTCAGTATTCGAAGGTGAACTAACCAAGTCCCAGCTTGAAAGCTTGAAGAATGAGTTGGATAGATGGATTCGACAGAACGTTGATTCAGTGATTATATTCAAAAATAGAAATAAAGATTGGCTTGATAAAGAATTTATGGGTCAGGATTTAACTGATTTAACGTCGGATATATTCTAAAGAAGAATCTGTCGATGTAAGATACGAAGAAAATTCTGGGAGATCGACAGATTTGCAAAATGCCGGTACAATGATATTTGTGCGATTTGTCTAATGATTTTAGTGATTTTTGGATGCGTTTTTGGTTAGGTCGACAGATAGGGCCGTTGAATCTATTGATACAGTAGGACTGGTAGTTGCAACT # Right flank : TGTGTGATTAAAGTCAATTAAATATAAAACATAAAGATTTATATTTAATTTACGGGAAGGAAACTACAATCAAACATCCTACTAAAATCCTACCAATTAAACTGGTAAAATAGATAAGTAAGTATAGAGAACAATTTTTATAAAAGGGGAATAAAATGGCAGACAAAAAATTACTTCTAATCGATGGTAACTCTGTAGCTTTCAGAGCTTTTTACGCTCTTTATCGTCAACTAGAATCTTTCAAGAGTCCGGATGACCTGCACACTAATGCCATTTACGCTTTTAAGAACATGCTCGATGTCCTTTTAAAAGACGTTGATCCAACCCACGTATTGGTAGCTTTTGATGCAGGAAAAGTCACTTTTAGAACAAAAATGTATGGTGAATACAAAGGTGGACGTGCGAAAACTCCAGAAGAGTTGCTCGAACAAATGCCTTACATTCAAGAAATGCTGCATGACTTGGGTATTAAAACTTATGAATTGAAGAATTATGAAGCA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATTTAACTTAAGAGAAATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 124-335 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCFI01000075.1 Lactobacillus helveticus strain IMAU80622 Scaffold75, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 124 29 100.0 32 ............................. TGGACTTCAAATTATTATCAATCAGACTCTGG 185 29 100.0 32 ............................. AACTCCGGAGCCAGAACTTCTAACCCAACTAC 246 29 100.0 32 ............................. TGCTCTAAATTATCGTGATATTCTTGAACATC 307 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : AACAGCTTAACCAAAAGTGTTCAATTTATTATTGCAATTTGCGAATAAAATAAATAGGATGAAACTGAATAAATTTTAGTTTTCATAAAATTGAAATGGCTCAATGATAAGGGATCTTTTAGTG # Right flank : TCAGGTGTATAAGGCATTTAAGTATCTATAGTCTAATTATTTTAGAGCATAAAAAAAGACCCGCCAAAAAATAGCGAGTCCGTGTAAGGAGAATAAGAATGAAGGAGAGGTAAATCAGCCCTCGTTTCTTAGTTTATATTAGGAGTGTTAAAATGGCAAGAACTGAACCAGAAAAAAAAGCTCAAAAAAAATATTATTTGAAAAACAAAAATATGTACAAGATTAACTCCTATCGCTCAAGAGCTAAGAATTTCATTTTAAAGTATGCAACCACTGATGAGCTCATATGGCTTAGAGGCTTGATTGATGAAAGATTATCTAAAAAAAAAATTTGAAGTAGCAATAACTGATTGAGTTTGTTGGTATTCTCCACGTATGTGGAGGTGATCCTTAAGAGGGCGTCAGGTCAGTTTATACGGTCAAGTATTCTCCACGTATGTGGAGCAACCAAAAACAGGACTAACTCAACCAGATTAGTCCTGTTTTTCATCTATATTAAA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.85%AT] # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //