Array 1 127557-127409 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZSR01000006.1 Photobacterium iliopiscarium strain ATCC 51761 CFSAN029430_contig0005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 127556 28 100.0 32 ............................ AATAACACATAACGTCTTGCCACCGCGCACCT 127496 28 100.0 32 ............................ TACGGTTGAAGTGTGGGCCGTTGTATCTGATG 127436 28 92.9 0 ....................G......G | ========== ====== ====== ====== ============================ ================================ ================== 3 28 97.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : | # Right flank : TATTAGATGTTGCTATTGGTAGCGTAATAATTAATGACGTGAGTAAGATATAAACTATCTAAAAAAATTTTAAAATAACCGTTTTTGTGCTTTTTTCTAAATTTTTTCAAAACCGTTAGATTTGCTCTGATAAACATTTTTTGCGCGGTGGCTTAATTTCACAGATTGCAATTAAGGATTTGCACTATTTACTATTATCATTTTGATTATAAACGAGTTTATCAGATTTCGTTGAGTGGTAAAGTTTGCTCTATTGTTTACCAGTAAAAACCTGAAAAAAATTAAACGCCTTATTTATCAAAATCTTAACTTGGCAAGTTCGCCCAGATGCGCTGTAATCAACGCTCCTTAAATGCAATCTGTGCATTTAGTGGGTTTCGGGTTGCTTGCCGTGCGCCCAGTGATGGCGCGGTCTGGGGGCTTGTTTTCGATAAATCCTTAATGGCGAAAAGGTGATCCGAAAACGCGCAAAGTGTGGTGGGGATGAGTGCTTTTTTCAG # Questionable array : NO Score: 5.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3510-3243 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZSR01000027.1 Photobacterium iliopiscarium strain ATCC 51761 CFSAN029430_contig0026, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3509 28 100.0 32 ............................ AGCTCCGACAAAACCCCCTTCCAATGTAATCC 3449 28 100.0 32 ............................ CTCAGCATACTCAACTAAACCCCTTGCTATGC 3389 28 100.0 32 ............................ AATAACATCATAGCTAAATACGACTTTAAAGC 3329 28 100.0 32 ............................ CATAAGAAACAGTTGAGCAAGCAAGAAGATGA 3269 27 78.6 0 ...........T.T......T..T-..T | ========== ====== ====== ====== ============================ ================================ ================== 5 28 95.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CTACTTCATTAGCTGAGAATAACGGCGTTCCGCCACCACCGCAAAAACCGACTAGCACGCCAGCTTTAGCTAATTCGCGCATTGCGGCCTGAGTAATGGACGTGCCAGTTCCGAGCATTATGGCTGTCGTGTTTGCTATGGGGATATTCCAATATAATGATTGCTTACCTTCGTCGGTGACATATTCAACCCGCCCACCATTCACTAACACGCGACAATGCTGCAAATAATAAAGATTGGCACGTTTAGAATGAATAATCGTTTTTAGCTCACTCGGTGTGAAAGACTTAGCGCACATAGCAATCACCAACAATAAAAAAACGAATTATATACATAATGCGTATAATTCGTTTAGAGTGTAATCACAAATACCCTTTTTTATTTGGCACTTATTCAAACCATATAAAACAACAACTTAAAATATCAGTTTAAAAAAGGGTTTTTAGCGAGGATTTGTGGTTTAGCTTTTATAAGCAATCACTTATACTAATTACGCTTCA # Right flank : TACTTGCTGCTGCCATCGCTTCTTTGATTTCATCTGAGCTATAGCCCTTTGATGACAAATACGCATAGGCTTTACTTTTGTCTTTAAAATTCGACAAATCAAACCGCTTTTTCGCTAACACTAATTGGCAGTTTTCATAAAAATCGACCTCACCCGCTTCCTCTAAATCATAGAAGACTTGCTCAAGATTAGTAATATCAACATGCTTCATTTTAAGCTCTTGCTTGATGACTGTTTTGCCTTTGAGCTTTCTCACCAATTTCAATACTTCGGTTTCAAGATCCGCATTCATGCCTTTAATTTTAGCTTTGCTCAATAGCGTATCGGCGGCATCATGCTCAGAAATTGCTCTTGAAATATATTGAAAGCTGTACCCTCGCTTAGTGAGATCGTTGGTTATTTTCTCTTTGGTGGTTTGACTAAAATCATCATAACTATCTAAACGACTTTTGATCATATCAAGTTCAGACACTTGTTTTTTCTCCATAATATCAATTAAT # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 12047-12315 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZSR01000027.1 Photobacterium iliopiscarium strain ATCC 51761 CFSAN029430_contig0026, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 12047 28 100.0 32 ............................ ACTCATAGTGGGCGTTTTTGTTTGTCCTCATT 12107 28 100.0 32 ............................ GAAAACGCCAATATCAGAAGCGGCCGACAAAA 12167 28 100.0 32 ............................ ATCACATTGTGACACTGTGCTGATAGGTCATT 12227 28 92.9 32 ........T................C.. CATTCAATGCGATTGGCTTTGAGCTTGTAAAT 12287 28 71.4 0 ...A...A.G.T..T..T..A...T... | T [12311] ========== ====== ====== ====== ============================ ================================ ================== 5 28 92.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ACACGCATGTAACGACTATTACAGAAATTCCGAGTGACATCAAAGGTTATCAAACCGTTAAGCGTGTACAGACTAAAAGTGCCAATAATAAGCGTAAGCGTTCAATTGCTAAAGGTTGGATCAGTGCTGATGAAGCGATCCATGCCATTCCTGATACCTCAGAGCGTAAGTTAACATTACCTTATGTTCAAATACAGAGTTTATCTAATCAGAATGTGATGCGAGTATTTATTGAGCACAGCCAAGTTGTGAGTGCTGCAACTGACGGTGTATTTAGTAGCTATGGATTAAGTGCCACCGCAACGATCCCTGTATTTTAAGTGCTGTTTTGATTGTAATAGCAATAATGGGTTAGATGAGTAGTCATTTAACCCTTTTTTTTAGCCGTTATTAGTTGTATTTAAAATCAATGACTTATAATAAGCAGATAAAAAAGGGGTAAAAGAGGGTTTTTAGGGTTTTATTTAAATTAAACAATCGCTTATTATAGTTAAGCTTCA # Right flank : ACAGGAAGGGCATAACGATAACGATAAATTGAATGGAGGGGTGAAGCGGTTAGATTTACATCAAAAGGTTAACCATAAAGTCCACCATTCGCTGGACTTTATGTTGTTAGTTACATGCTGTTTACTGATTATTCTCATGTTCAAATTCGATCCACGCTTTTTCTAATTCAATGAGACTGGCTGTGATTTTAGCTTTGTCTTGTTTTTGAATGATTAATTGTCGAACGTGCTCTTGCTGTATAAAAATATCCTGACGTTTATTGTCTACAAAGTAATTTCTTAATCCTTTTGCCTGATCCATATACTGATGTCCAATATAAAACGGTGTATATCAAAATAGTACATTTATTGTGGTTATTCTCAAGTGTTTGATAGGCTGAATGGATAGTTTATGGGTTTATTTGCTTATGGCGTATCAAGTCTGAAACAGGTTATGCCATTATATAAAGAGGCGGGAATATAATAAATTTTAGGTAATATGACTAATTTACAGATTGAGA # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //