Array 1 8975-10469 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDEJ02000021.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0006 NODE_21_length_65982_cov_13.484124, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8975 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 9036 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 9098 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 9159 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 9220 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 9281 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 9342 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 9403 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 9464 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 9525 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 9586 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 9647 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 9708 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 9769 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 9830 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 9891 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 9952 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 10013 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 10074 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 10135 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 10196 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 10257 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 10318 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 10379 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 10440 29 93.1 0 A...........T................ | A [10466] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5282-5919 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDEJ02000091.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0006 NODE_91_length_13300_cov_12.867380, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5282 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 5343 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 5404 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 5465 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 5526 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 5587 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 5648 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 5709 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 5770 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 5831 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 5892 28 79.3 0 ...........C...A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //