Array 1 491354-487378 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEGM01000001.1 Acinetobacter sp. ANC 4973 Contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 491353 28 100.0 32 ............................ TAAAACATTTTCGATACGCTCTAAACGTGAAT 491293 28 100.0 32 ............................ TTCACAACGTCACACGTATGACATTAGCGGTA 491233 28 100.0 32 ............................ TTGTGTCTTGGCTTTCGCTACAATTCGTTGCT 491173 28 100.0 32 ............................ AGTGAGGAAAATCCATATTCATCACAAGGGAC 491113 28 100.0 32 ............................ GAATTAGTACGCGAATTTTCTTTACCGCAAGA 491053 28 100.0 32 ............................ CCCATAAATAATTCCGTCCTGTACATCTGCAA 490993 28 100.0 32 ............................ ACTGGTACGATCACCAATATAAAGAGTTCTAC 490933 28 100.0 32 ............................ TGAATAACGTCTTTAAACTTATTTGTTATTCT 490873 28 100.0 32 ............................ CCAGTGCTACCGAGCGCGACAGGTAAAATCGC 490813 28 100.0 32 ............................ GCACAATGGAATTATTTTACGTGTCAATCATG 490753 28 100.0 32 ............................ AACGGAATTAGGCGCGTGGGATAAAGAAAAAA 490693 28 100.0 32 ............................ TGTTGGGGTAACTACTCCACAAATGTCGTTTA 490633 28 100.0 32 ............................ GATACGAAAATTGAAGTATTTCCGCATATTGA 490573 28 100.0 32 ............................ TCATGGATTTACCAGTGGTTAAAGCATTGGGA 490513 28 100.0 32 ............................ CCAGTCGAATTAATGGTCAAGCTCTCGGCTGT 490453 28 100.0 32 ............................ TCTAGCATCATAGCGCGACTTGCCCCTGTGAT 490393 28 100.0 32 ............................ TCAGTTTTAAGTTTCCCAGACTTGCGATCTTT 490333 28 100.0 32 ............................ TTGGAAATTATGCCACCTTTGGCTAAGCAATG 490273 28 100.0 32 ............................ CGATGTTGACATTGGTCGGAGGGCTTTATAAG 490213 28 100.0 32 ............................ AGCAGTCAAAACCCCCGCAGTATTTGCTTTCT 490153 28 100.0 32 ............................ TAAAACATCATCTAAATTAAATACTGTGTCAT 490093 28 100.0 32 ............................ CAAATAAATCAGGCAACGTATCGCGGTACGCA 490033 28 100.0 32 ............................ ACTTGATGTTTTAAGTAATCCGCCCTGATCTG 489973 28 100.0 32 ............................ TTATGAAAAAGTCAGCAATGGTGCTGGTGGTG 489913 28 100.0 32 ............................ GCCATGTTCAGCACTTCCCAATGGTCTTTTGT 489853 28 100.0 32 ............................ AATGGTAACAGTTCTAATGGGGCTTATTGGAG 489793 28 100.0 32 ............................ AATTTATAGTCACACCCGGTGCAACACCTACC 489733 28 100.0 32 ............................ AATTGATAGTCATAATGTCATTTTAAACTTTG 489673 28 100.0 32 ............................ GTCAAATAACAGTGGGATTGCTTCAGGTGTGA 489613 28 100.0 32 ............................ TTTGAAATTATGCCGCCTTTGGCTAAGCAATG 489553 28 100.0 33 ............................ CAACAGATTGACAATATGGCCAATGATTTACGT 489492 28 100.0 32 ............................ AGAAGAAGCAGCCGCTTTAGATATTATTTTAA 489432 28 100.0 32 ............................ TTGCCAGCTTCATCTATTGTGACGATGTAACC 489372 28 100.0 32 ............................ ATCAACAAATTTAAATCAACAGGAATAAAACC 489312 28 100.0 32 ............................ TCAAACGCCTGACCAAGCCAAAGAAGGTATTG 489252 28 100.0 32 ............................ AGTTGAAGCCAGACGTTATCAGCCAGCATTAA 489192 28 100.0 32 ............................ ATTAACAAATTTAAATCAACAGGAATAAAACC 489132 28 100.0 32 ............................ CCAAGAAAAATGGGGTGAGTTTTTACCGCTTG 489072 28 100.0 32 ............................ GCTCCAAGATCCTGCACCATTACTTCCACCAA 489012 28 100.0 32 ............................ ATGACCCCGCCATTAGCCTTAATAGCGGCTTC 488952 28 100.0 32 ............................ GTCACAAAAAACACTGATTTAGCTGCCACATC 488892 28 100.0 32 ............................ AACATATAAATGCAAGTTTATATGTAGATTCA 488832 28 100.0 32 ............................ GTTTGATGCCTGCGGTAATTGATCATAGTAAT 488772 28 100.0 32 ............................ GCAGGGTTAATATTATACATATTAAGTAAACC 488712 28 100.0 32 ............................ AATAAAGTGACAATGTTAATCAACGGGTCCCG 488652 28 100.0 32 ............................ ATTAGCGCAATCATTTTACCGACGTCTTGGCC 488592 28 100.0 32 ............................ ATATGCGTGGCATCGAAGCCTACTGGATGGAA 488532 28 100.0 32 ............................ AAAGTTGTAAATCACAGTAAATTGCGTATTTT 488472 28 100.0 32 ............................ TTGAATTTGTTGTAATTTTAAATCTACAATTA 488412 28 100.0 32 ............................ AATAGCAAAGTAAAGCGACGATGATAGTGACT 488352 28 100.0 32 ............................ ACATAAAAATCACCATCGAGACTTTGAAGTTT 488292 28 100.0 32 ............................ ACATAAAAATCACCATCGAGACTTTGAAGTTT 488232 28 100.0 32 ............................ CGTGCCTGTTCTGCAATTTTATCAAACAATGA 488172 28 100.0 32 ............................ TGTAGGGCAGGCTTTAAATGCTACTCAAAATA 488112 28 100.0 32 ............................ ATCGCAATTACAAACCCCATTAGAATTAATTG 488052 28 100.0 32 ............................ ATCATCGGCAGAAAAAGTAAACTGGCATGAAA 487992 28 100.0 32 ............................ TAAAGTTACACAGTAACGTCCATAAATTTCAC 487932 28 100.0 32 ............................ GGGCAATAAAAAACCCGCCTAAGCGGGTGGAT 487872 28 100.0 32 ............................ AATATTCGCGGGGGTGACATCAAAAGTGCTTT 487812 28 100.0 32 ............................ ATAGTGATTTCAAGCTCAACATCACGGGCTTT 487752 28 100.0 32 ............................ AATCACCCTATTCTCTTTAAAATTTCTTCAAG 487692 28 100.0 32 ............................ ACAATGGACACAACAAGGCGAGGGTGTCGATA 487632 28 100.0 32 ............................ ATCAATTCCCGCAAGTGCTATTGTAAGTATTA 487572 28 100.0 32 ............................ AGCTAATTTAATGGAGCCTTGCCCTGATCTGC 487512 28 100.0 21 ............................ ATATAAGCTAATAGCTTTTGC Deletion [487464] 487463 28 100.0 30 ............................ CAAATGGTGTGTGTAAAACGTGGTGACAAA 487405 28 96.4 0 .........................T.. | ========== ====== ====== ====== ============================ ================================= ================== 67 28 99.9 32 GTTCACTGCCATGTAGGCAGCTTAGAAA # Left flank : GCTGATTTGAAAAAACTTGATCTTAAAAAATGGTTAGATCGATTAACTGATTATGTTCACATCACTTCTATTCGAGAAGTCCCAGAGAATATAAACGGTTACGCTATTTATAAGCGTAAGCAAGTGAAAACCAATGCTGCACGTTTGGCCCGCCATCGAGTAAAACGCGGTGATATTGGCTTTGACGAAGCTTTAGCTCGCTATAGCAATGTAGTGACAACGACGAATTTGCCATTTGTCCAAATGAAAAGTTTAACTTCAGATCAAATGTTTAAACTTTTTATAGAAAAGCAAAATGCTGAACAATCTGAAAGTCAGGTTTTTAGTACTTATGGTTTAAGTTCACAATCAAGTGTTCCTGAATTTTAACCCAATATTTTTTCATTCTTTAACAGTTTAATAAAATCAATAAGTTATAAGCGTGGGTTAAAACTTGGGTCTTTTGTAGATTATGAGTATTAACTCACTGTTATAAATTAATTTTTTGTTATAGAATTACT # Right flank : TTCATCAAAGCTCATGTTAGAACTTAAAGCTATCAGGAGCATTTGGAATAAGATGAATGCGTTTTACTCTAAATAGGAACAGGTCGATTCAACAATCAAAAAATTAGATTTAATAAAGCCAGTGCATGACATCTGTGCGGAATTTTTCACTTACTATATACTTTTTTGTAAAATATATTCCCAAATGAGATAACCTAAACCGAATCCAATGAATGCATAAAGTGTGATGATGAAAAATACAAAACTCGCTTTGTTTTTCTTTTTTAATGAATTCATATTGATGCCCACTGCTTAGCCTTTAAGATAACATCATTATGTCGAGTTTAGCTTTAAACGTGTAGATACAAAAAATGATTAAAAAAATATAACAGATTTATGTGTTTTTATTCATCTGTTATAGTTATGTGCATATAAATCTAATAATAGAAATTATAAAATACTGACTTTTATGAATCAATTGAGGCTTTAAACGAGATAAATTATGATCGTACAGAAGGGTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCATGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 32048-32796 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEGM01000005.1 Acinetobacter sp. ANC 4973 Contig5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 32048 28 100.0 31 ............................ TGGTAATTACCAATATAAACCAATTGCCCCG 32107 28 100.0 32 ............................ TGATGTTTTAATCGAAAGCGGATTTCGAACAC 32167 28 100.0 32 ............................ AATGGAAACCCGACCACGATTACTGTGCTTGC 32227 28 100.0 33 ............................ GTTGAAAGAATGAATTTGCTGACATTCAGCCAC 32288 28 100.0 32 ............................ ATAGTCAAACCCCAGAGTTTGACACTAACAAA 32348 28 100.0 32 ............................ TTTCCCCGGCTCAGATAGTGCGTTCTCGAAGT 32408 28 100.0 32 ............................ AATGGACTGAATTTAGTTTTTTTTCATCTTTG 32468 28 100.0 33 ............................ TTCGAAATTCTTGGGGCGAAGATTCGGTTTACT 32529 28 100.0 32 ............................ ACAAACAAAGAAGAATCCACCCAAGGCAATCA 32589 28 100.0 32 ............................ CTGAAAAAATCAAAACTGTAAAAAAACAGTCT 32649 28 100.0 32 ............................ TCAAAATGTGACTACGGCTGAGATAGAAAATC 32709 28 100.0 32 ............................ TGAATTATTGGGTGAATCTTATAAGTTGTCTG 32769 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 13 28 100.0 32 GTTCACTGCCATATAGGCAGCTTAGAAA # Left flank : CCAATATTTTCTTCTACATAGGCTATTTGACGTTGTAAATTGCTTATTTCAATGGTGTCGGCATCAATCAAGGTGATTTTCCCCACACCTGCGCGTGCTAATAGTTCCGCACTTGTACAGCCTATGCCACCACAACCCACTATAAGGACATTGGCAAGTTTGAGTTTTTCTTGTGCTTCTATATCCCAACCATCAAGAAGAATTTGGCGTGAATAAAGGTGCATTTCATCATCATTTAACTCTAAGTCCATGTCGAGTAGATTAGTCACTAAGTTGTCCCACTTGCATTTGCTGATTTATAACCTGCGTAGATTATAAAGGATATCCTCTTTCTGTTCTGTAGAAGTCTTTGACAAGAACCCATTTTTACCCCAATATTTCAAGTACTCTTTAACAGCCCTATAAAATCAATAAGTTACAATTCTTTAAAAAATTTTGGGTATTTTGCATTTTTTAGCATTAACTCCTTGTTATTTTAAAGCTTTGTCCTTTATATTTAC # Right flank : AACAATTTCCCTTAAAAAAAACCGCCCTAAAGAACGGTTTTTAATTTAACAATAATAAAATGCTCTTAGAAAAGGCAAAATCTAATTAACCGACTTTTTGAATCCCTTGTATTTTGGCAATTTCCTGTTGTTTGAGTAAATTTCGCTGAATTTTTCCACTTGAGGTTTTAGGCAAACTTTCTACAAATTCAATCTCTTTTGGATAAGCATGCTTAGATAAACGCGAACGTACATATTCTTGCAATTTATGACTTAACGCATCCAAAGCTGAAAATTGAGGTTTTAAAACCACAAACGCTTTAACGACTTCAGTCCGTTCTGGATCTGGCTTACCAATCACAGCAGATTCAAGCACTTCACTACATTCCAACAATGTACTTTCTACATCAAAAGGACCTACACGATAGCCTGACGTTGTAATGACATCGTCAGCACGACCAATAAAATCAACACCACCTAATTCATTCAATCTAACTGTGTCACCCGTTAAATAATAATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACTGCCATATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //