Array 1 284-49 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIXK01000008.1 Enterococcus faecalis strain 1CIB1 1CIB1_S27_L001_R1_001_contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 283 37 100.0 29 ..................................... TACATGTGACAGCAGTTCTACTTACATTC 217 37 97.3 29 ....................................T GGCTTGTTGTTACGTGTATTACAGACGGG 151 37 100.0 29 ..................................... CACACACACGCTACTCACAGGCATTATAG 85 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================= ================== 4 37 99.3 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACG # Left flank : GCACAATTAAATGATAAACCAGAAGTCAAATCAATGATTGAGAAGTTAACTGGAACAATTAGTCAATTAATTGGCTATGAATTGTTGGAACATGAAATGGATTTGGAAGAAGATGGCATCACTGTGCAGGAACTTTTCAAAGCTCTTGGAATCAAAATCGAAACAACGAGTGATACGATTTTTGAAAAAGTTATGGAAATTACACAAGTACATCGTTATTTATCAAAGAAAAAATTATTGATTTTTATTAATGCGTGTACGTATTTGACAGAGGATGAAGTGCAACAAGTGGTAGAATATATCTCTTTAAATAATGTGGATGTCCTGTTTTTAGAACAAAGGGTGGTCCAGAACAGATTCCAATATATTTTGGACGAAAACTTTTATTTGAGTTATGAAAAAGCTTAAATTGTTACTGATTAGTGGTTCATTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAGTACGGAACTTTGGAAAAAAATAATTCTCCGAG # Right flank : GTGCAACAAAAGAATATTGTTGTCAATGGTGTTTTAGAGTCATGTTGTT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 386489-387449 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIXK01000005.1 Enterococcus faecalis strain 1CIB1 1CIB1_S27_L001_R1_001_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 386489 37 97.3 29 ....................................C CTAAAGCACTAACAACTTCCCACAATGCA 386555 37 97.3 29 ....................................T CAATATTAAGATTAACGAAACTAATAAAT 386621 37 100.0 29 ..................................... ACAAATTCATCTATTGTTTCGCAATGTTC 386687 37 100.0 29 ..................................... AAATAAATGGAACTCATAGTAAGAGGGTT 386753 37 100.0 29 ..................................... AAAACATTAAGAGAAAAGATTATTATGCA 386819 37 97.3 29 ....................................T GAACAATCAGGTAAAGCATACTTTACAGA 386885 37 100.0 29 ..................................... GTGCGTTTCAACTCTGTTACGTCAAGTGG 386951 37 97.3 29 ....................................T TCCTCATTTTTAGACAAGTTCATTGCCAC 387017 37 97.3 29 ....................................T TCTGGATCAGGAGGTGGATCTTATCAAGG 387083 37 97.3 29 ....................................T GCACCGTCAACGTATGTTGGGAGCTCGTA 387149 37 100.0 29 ..................................... GCAAAAGAAGAAAAGAAAACAAAAGTTGC 387215 37 100.0 29 ..................................... TGTTGAAGTAGAGCGTGATGCAATCCTAA 387281 37 97.3 29 ....................................C AATTTAAATTAGCGTATATGATGATTAGC 387347 37 97.3 29 ....................................G CTAATTTAAAGGCAAAGGCAAGAATAGAA 387413 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ============================= ================== 15 37 98.4 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACA # Left flank : CATATATCCTTATCAAGTAGTAAATGCTTCTTTTGACTTTCAAGAGGGACGAACAACAGAAGGTGGAGAAATGACACACATGATTGGCTTTGCCACTTCGCAAGAAAATACCTATGAAGATTTGGAGCAACTAAGCGTACCTGCTCATACATGGGCGGTTTTTCCAAATGAAGGTCCTTTCCCACAAACTTTACAAGAAACCTGGGCAAGGATATTCTCTGAATGGTTGCCTTCATCTGGTTACCAAGTCGTTGCAGCACCAGAAATTTCGTTTACGCAATATCAAGGACCAGCAGAAGCTAAGTATAGTGAAATCTGGCTCGCTGTTACAGCTACTAAATAAAGAAAACCCACCATTGAAAAATGGTGGGTTTTTCCGCCAAGAAGGAGAAAGTTTGGTATAATAAACGTGAAGAAAAAAATCAGACCTTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAATACGGAATCATGGAGAAAAAATAATTCTCCGAG # Right flank : TCAAGAAATTGCATTAAGTTCAAAAAATTTGTTTTAGAGCCATGTTGTTAAAAAACAAACTATCACCACAAGCAATCCGTAATTTTCATCACAAGATTAGAATTTTTATCATCAAAGACGAGCTGCTTCGATTTTCGAAAACTAATCAAGTGATAAGTCAAAATGTTGATAGATTGAGATTAGTTCTTCCTTTTTTTAGGAAGGGCTTTTTTTATTGATAGAAGAAAGGGAAGAAATCTTGGGAGCACCTAAAAAAATTGTGAGAAATGCTTCTGTATTGTTTGGTTTCTGCCTCAGAAAGTTGTATACTTAGATTGGAATTATTCTATATTACATGCATTTTCACACTTTTTGGAAAAGTTCACTTGAATTTTCTTTTAGTTTCGTAGATAAAAGGAGTCATCGCTAATGGAAATGAACAATTCAGGTAAGCTTGTTTCTTTGTGTGGAGGCAAATCAGGGAGGAAATAATATGTTTGATATTGTAACATTGGCGAGAA # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.63, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //