Array 1 115302-116109 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPEA01000012.1 Pseudomonas cichorii strain 481 Contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 115302 28 100.0 32 ............................ ATGCTCGGAGGACTGAGCGAGACCAAGGCCAT 115362 28 100.0 32 ............................ AGCATGTTCAGCACCGCCCGCGCCAAGGTGAA 115422 28 100.0 32 ............................ AGGTTGATACGGAACGGCGAGTTGCCTGCGGT 115482 28 100.0 32 ............................ ATTAACTGGCCCCAGCACACCGTCCACGCTCT 115542 28 100.0 32 ............................ TGGCTGACTTGGTCACTACAAACCCGGGGCCG 115602 28 100.0 32 ............................ AGGACAGAGGGCGGTTTGTCGTCACAAAGCCG 115662 28 100.0 32 ............................ ACTAGAAAAAAAACTCGGAAAGACCGGCGCAA 115722 28 100.0 32 ............................ AACCTGAGCGGTGCCAACCTGAGCGATGCCTA 115782 28 100.0 32 ............................ CGGAGTCACGCTGATGAAAACCGAAACGATAA 115842 28 100.0 32 ............................ AGGGACTTCAGGGTATCGCTCGCACATCGCAG 115902 28 100.0 32 ............................ CGTCCGCAGATTCCTTCAGTAATTCATTAATT 115962 28 96.4 33 ............A............... ATCATCGAAGTTCATGTTGAATGCGTTGTTGGC 116023 28 92.9 32 ............A.....C......... ATCTTCAAAGTCCATGCCGTAGGCGCAGTTGG 116083 27 89.3 0 ............C........-..A... | ========== ====== ====== ====== ============================ ================================= ================== 14 28 98.5 32 CTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CTGTAGAACCCGAAGGCATAAGGGTCTTTCATTATTATTCTTGTCCCCATCAGTCAAGTTGGTCAGAGCATCAACCGCTTAAATGATGGGTTTGAGGGTAGTTGAGAGTGGGGGTGTTTGCTGCTGAGAGAGCGGGGAGAGGAGCGGATTTATCCGCGAGACGTCATTGAGGCAAATGCATTTTGTACGACGAAAGGCTCATCCCGCACAACCTTGTGGGAGGGGCCTTGGCCGCGACAGCTTCACACGGGATATGTCAGGAAATGGAGCTTTTCCGGGCTGTCATGTCGCTGGGGACGACATCAGAAAGCACAGGGTGTCCCACAGCTTGCGAATATCTATCCAGTGGTCAGAAATGAACCCTTTCTTGACCCTCTTTTTTCGCCTCAGATTCGTCCTTTAAAAATCAATGACTTACAACGCTCGATAAAAAGAGGGGTAAAACGGCTGCTGAGGCATATTTTTCTTTGAAAACGGAGAGTTATCGAGCAGAGTGTCTA # Right flank : AAACCAAAGCCCTTGTAGTCCCACCTCACCTACAAGGGCTTCAGTTCATCGCCAACAGAACATCAGAACCAGGGAACAGTAGCCGTAGCACTCAACCCATAGCTATTGAATGTCCCTTCCTGGGCGCTGCTCTGTATCGGCTCATGCCGGATGAACAGCAGGAAGGTCTGGCCACTGGTACGGCTACGCATCTGGACAAAGGGCAGGTTGCAGCGTTTTGCAGCGCTGTCGGGGATGCGTTCGCGGGCCTGTTCTTCGGTGAGGCCGTGGCGTTTGATCAGGCGTCGTCTTGTGCGCTCCGGGTTGCTGTCCACTTGCACTCGGCTGACGCGCCGATGTTGCGCATCAGTGGGCACCGGGCTCAGTTCGCCTACTCGCACATGATCGCGCATGCCCGTCAGCCAGCTCTGCGCCATCAGGGCATCCAGCGCTTGTGCACTGCCATGCAGGCGCAGGCGGTCGCCCAGGCCCTTAGTCTTGCCTATAGCCGGGAAGCTGAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 125235-124787 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPEA01000012.1 Pseudomonas cichorii strain 481 Contig_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 125234 28 100.0 32 ............................ GTAACCGGTCGTCAGCAGCACAGGCATTAGCT 125174 28 100.0 32 ............................ AACTGAAGATATGAATACGGCTGGGGCTCGAG 125114 28 100.0 32 ............................ CATGCCAGCCGTGATTTCTACCGGCTTCTGGT 125054 28 100.0 32 ............................ TGTAATTTCTGGACAAACATGGAGGGGCAGGA 124994 28 100.0 32 ............................ CTACTGTCAAATGAAAACCTGAGCCACAACGG 124934 28 100.0 32 ............................ ACCAGCACGCGCCGGGCGGCACGATTGCCAGG 124874 28 100.0 32 ............................ CGTCCGCAGATTGTTCATTTAATCCTTCATTC 124814 28 89.3 0 ...........A.C..........T... | ========== ====== ====== ====== ============================ ================================ ================== 8 28 98.7 32 CTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : CACAGAACAGGCGGTAATCACTGGCAATCCCCTTTCTGAGCTGCCTACACGGCAGTGAAGTAGACACTCTGCTAGATAACTTTCCGTTTTCAAAGAAAAATCCGCACCAGTAGCTGTTTTACCCCTTTTTTACCGAGCTTTATAAGTCATTGATTTTTAAAGAACAAATCTAAGGTAAAAAAAGAGGGTCAAGAAAGGGTTTATTCCTGGCCCACTTCTGTATGGGCAATGTCGCGGCCAAGGCCCCTCCCACAAGATGAACTGCCTTCGATACCGTGTCGGACTACTCCCGTAGGAGGGGGCTTGCCCGCGACAAGACACACAGCAGGTAATACTGATTCTCACAGGGCAGCCCCATTGCCGATCCTGACCCTCTTTTTTTCACCCACCATGCGCCCTGTTAAAATCAACCACTTACAGAACCGACGAAAAAGAGGGGTTGAACGACCGCAAGCACATATTTTTCTTTGAAAACGAAAGGTTATCCAGCAAAGTGTCTA # Right flank : ATAATCAATCCAACCGTCCAACAACCCCACAAGCAATTGATTTAAATAGACTTAATCCCCACCTGTAGGAGCGCGCTTGCCCGCGACAACCATTTTGTAATCCCCTCCTTACAAGAACCGCAGACCGATCTTTCTGACTAGCCACCACCCACACCCTCAAAAAACATAAAGCACCGCCTTACGCTTTCGGCTATATACATTCCTTTCTCCGGCCAAGTGCCATCACTGGTTCGATCATGGATGACATCAGCTCTTCGGATCTCAAGACGATCCTGCATTCCAAGCGCGCGAATATTTATTACCTGCAGCATTGCCGGGTATTGGTAAATGGCGGTCGGGTCGAGTATGTGACCGATGCGGGCAAGCAGTCGCTGTACTGGAATATCCCCATCGCCAATACCACGACCGTGCTGCTGGGCACCGGTACTTCAGTGACTCAGGCGGCGATGCGGGAGCTGGCCAAGGCAGGCGTGCTGGTCGGTTTTTGCGGCGGTGGCGGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 125675-125882 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPEA01000012.1 Pseudomonas cichorii strain 481 Contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 125675 28 100.0 32 ............................ GGGGATTGCCAGTGATTACCGCCTGTTCTGTG 125735 28 100.0 32 ............................ GTGTGCCGCTTTGAGTTCTTTCCAGATGCGGT 125795 28 100.0 32 ............................ CGAACATCATGGCGTGGCCCAGGTCGCGCACA 125855 28 92.9 0 ............A........C...... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 98.2 32 CTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : AGCTAATGCCTGTGCTGCTGACGACCGGTTACTTTCTGAGCTGCCTATACGGCAGTGAAGTAGACACTTTGCTGGATAACCTTTCGTTTTCAAAGAAAAATATGTGCTTGCGGTCGTTCAACCCCTCTTTTTCGTCGGTTCTGTAAGTGGTTGATTTTAACAGGGCGCATGGTGGGTGAAAAAAAGAGGGTCAGGATCGGCAATGGGGCTGCCCTGTGAGAATCAGTATTACCTGCTGTGTGTCTTGTCGCGGGCAAGCCCCCTCCTACGGGAGTAGTCCGACACGGTATCGAAGGCAGTTCATCTTGTGGGAGGGGCCTTGGCCGCGACATTGCCCATACAGAAGTGGGCCAGGAATAAACCCTTTCTTGACCCTCTTTTTTTACCTTAGATTTGTTCTTTAAAAATCAATGACTTATAAAGCTCGGTAAAAAAGGGGTAAAACAGCTACTGGTGCGGATTTTTCTTTGAAAACGGAAAGTTATCTAGCAGAGTGTCTA # Right flank : AAGCTGATACCGCACCGCATTGTCGCGGGCAAGCCCCCTCCCACGGGAGTACATCCGATAGATATCTATCGTTTGAAGCACGTCTTCGCGACTGAAGTTGCTCCTACACAAGACAACTCACTCGCAAAGGCATTCAAACCCAACCCTGCACAAACCTTCTAGACTTCCCATCCCCCATGCGCGATAACACTCGTCCATATCCCCTTTTTTGCCCATAAGCCTGCCATGACTCAGAGCAACTGGATCAATCTTGCTCAGGACCGCGATACCGGTATCGAGACGCTGCATGCGCATTTCGAGGGGAATGCCCATGTCTATGATCCTCACTGGCATGACAGTTATCTGGTGGGTGTCACGGAGCAGGGGGTTCAGCAGTTTCATTGCCGGCAGCAACGTTATGCCAGCACGCCGGGTCAGGTGTTCATGCTGGAGCCGGGGGAGATTCATGATGGGGATGCGCCCAGCGCCGATGGTTTCACGTATCGGATGCTGTACCTCGA # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 140750-140362 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPEA01000012.1 Pseudomonas cichorii strain 481 Contig_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 140749 28 100.0 32 ............................ CTTGAGATGTTCATGCTCCATGCAGGGTCATC 140689 28 100.0 32 ............................ GCCACCTTCACGGCGCGGCTGGCGAATCCATT 140629 28 100.0 32 ............................ AGCGTGGCGTAGGAGTTGCCGGTGTGCAGATT 140569 28 100.0 32 ............................ ATAGTCCGTTGGTTTCTGGAATCTATGCGAGC 140509 28 100.0 32 ............................ ATATCACTCGCAGCCACCAGCCACATGGTGGG 140449 28 89.3 32 ...C........A.........T..... GTCATGACACGCCCACTGATATCCCCGTACAG 140389 28 75.0 0 ...C........A........C..ACTC | ========== ====== ====== ====== ============================ ================================ ================== 7 28 94.9 32 CTTAACTGCCGTGTAGGCAGCTCAGAAA # Left flank : TCGAAAGGAGTGGGAGTTCGAGTCTCCCTCGGGGCACCACATAGAAAGACACTCAAGCGGTTGCAGAGCTTGGGGTGAAAGAAACCGGCTAGTTAAGCCGGTTTTTTTGTGCCTGGGTTTTGGTGATTGCCGGCCTGTAGGAGCGCACTTGCCCGCGACAACTGTCGCCCTGCCAATGAAAATGCATTGCCTGTACGAACGTCGCGGGCAAGCGCGCTCCTACTTCAATCACAGCTAACTGAGTAAGAGCGAATTCATTCGCGAAAACGGCATTCCAGACAATACACGTCCTTTGAATGTACCGGCCTATCGCGAATGAATTCGCATACAGGTCCGGCACCAAACCACGACTTCAAGCACCTTCTTTTTGACCCTCTTTTTTTCAGACTCCGTCGCCCCTTTAAAATCAACAAGTTACGGCCCCTTCAAAAAAGAGGGTAAAACGGCCCCAAGCAGGTGGTTTCTCTTTAAAAACGGAGAGTTATAAGGCAAGGTGTCTA # Right flank : CACTTCATAACCGTCAAATCCTACGTCCCCACGCACTTCCGCCCTACAACCACCGACTCCCCATTACCTCCCCCAAACTGAATCCCCTCATTTAACCCACACAGCTCCCACGCTACCCTTCCCGTCATTCGCTGCCCCATCAGCGACCGGGTTTGGCGACCTGGTTTAAAGATAAATTCCTCCCCATCGCAAAGCAGTCGATTTATTCTTCTGCGCACTGCGTTATGGCGGTTGTGTGCGGGAGGCCTTCGGGTCTGCCGGGTTTATCTTTTTACCGGTTCGCCAACCCTCACACAGCTGCCTCCATTTGTTTGGCGACAATCCGTGGCAGCTTTTTTCAGCGACCATAAAAAGTGTGCCTCTATGCAAAAGCTTCTATCCGATTCCCCCTGTACATCCGCCTTCGAAGCCACCCTCTTCCTCCGCCATAGCCGCATGCTCCGTTCCATTTTCACCGAATCCCAAGCCTGGTTCTGTCTCTCAGACCTCGCCCGCTTGAT # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTAACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //