Array 1 60430-55429 **** Predicted by CRISPRDetect 2.4 *** >NZ_CBYL010000009.1 Clostridium jeddahense strain JCD, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 60429 33 100.0 34 ................................. GAAAAATTTTGGTCAATGTACCCACGGAAGATCG 60362 33 100.0 35 ................................. TAATTCGCCTACACGATTTGTGTAGTATCATACAG 60294 33 100.0 34 ................................. ACTAATGTCGGCCTGACTGCTGATTTTATATATA 60227 33 100.0 34 ................................. TTGTTGCCGCAGTTTTACAGGCTGCATAAGCGCA 60160 33 100.0 34 ................................. AGCTTTTGGAAGTGGTGATTGTTATGATGGCAGA 60093 33 100.0 33 ................................. GCTCCCCGGCATAGCTCTGCACCCTGATATCAA 60027 33 100.0 33 ................................. ACTAATGTCGGCCTGACTGCTGATTTTATATAT 59961 33 100.0 33 ................................. TCGCCAATGCCCGAACTGCTCCGGGTATGTATA 59895 33 100.0 33 ................................. TGTGCGGCAAACTATTGTGTTGACGCAGGTTGC 59829 33 100.0 34 ................................. TGCTCTTGTGCAATGCCCAGCAATATGCCTTTTG 59762 33 100.0 34 ................................. CAGGCATATGACGCAAACGGCAAAATGAAACCCC 59695 33 100.0 35 ................................. TGAATTATCACCCGGAGCACAGAAATTTATATTAA 59627 33 100.0 36 ................................. ATACGTCGTAAACAAGGTTGCACAGGCTATTTCGGA 59558 33 100.0 35 ................................. AAAAGCGATACTCCTGTTATCAGGCTCCGTCGGCA 59490 33 100.0 34 ................................. CACACGAATTTGTTTTGACATAACTGTGCCTCCT 59423 33 100.0 33 ................................. ATCCATTATCATATGCACACAATCTAATGTCAA 59357 33 100.0 33 ................................. CGCAGCCGCAGGTTGTGGTACGGTTTGAATTTA 59291 33 100.0 34 ................................. TGTAAATTTCGGGTACAGATCGGTGTACATAGGC 59224 33 100.0 36 ................................. TTGTGCCGCAACTTTTCCGGGTAACTGCGCAAACCA 59155 33 100.0 35 ................................. GGACGCAATATAAAACGCATAATCACCATAGCTAA 59087 33 100.0 33 ................................. CGGGCCGTGTATAGTTAATTTGCTCCCACATAT 59021 33 100.0 35 ................................. CATAGTCGCAATGATAAAACTGACCGGAACAATCC 58953 33 100.0 33 ................................. ATCATTGACAAAGAAAGATAATTATCCGAAGAT 58887 33 100.0 35 ................................. TTATCTGAATTTGTCTCAAACCTGTGGCGGCAACT 58819 33 100.0 33 ................................. CTACCGTAGCGAGCGGATTCACAAGCAAACGAA 58753 33 100.0 35 ................................. ATCAGGATTGTTTTCGCGGGCTCTTTGCTCCGCCT 58685 33 100.0 35 ................................. CGTTGTGGTGTTATAACGCCGAGCCAGTGCCGGAA 58617 33 100.0 34 ................................. GCCCATTGCTCTGATCTTTTTTGAGCCGATAGAG 58550 33 100.0 34 ................................. ATCAAGCTGCGCCGTATGTCCATGCAGGAGCAAT 58483 33 100.0 34 ................................. CTCCTCTCCGCCTCCGCCGGCCTTATCACTCCCA 58416 33 100.0 35 ................................. GCTGCGATCCCGAAAAGCGCAAATACGCGCGCGAG 58348 33 100.0 34 ................................. TTTGCTATAAAAACTATCGCTTGAAAAGTCGCAT 58281 33 100.0 35 ................................. GGCACTATAAATTGTTGGAGCATATCGGTCTGGCC 58213 33 100.0 37 ................................. AAGCGCTGTACCAAGAGCGGCGCCGCCAGATTGAGGG 58143 33 100.0 32 ................................. CAATTGTTTCGTCATCTGTTCCACCTCTGAAA 58078 33 100.0 36 ................................. TCCGCCCCATGTGGTTTTAATCAGCCGGATCATCTG 58009 33 100.0 34 ................................. GCTCCGCAAAGCCAGCATTGTTTGTCGCCCATAG 57942 33 100.0 33 ................................. AGGTTGTGGCGGATCAGGTTTTCGTCGATTTCA 57876 33 100.0 34 ................................. AGCAGAATCATCAACAAAAGACCTTGTTTTGGTC 57809 33 100.0 34 ................................. CGTATAAAACAGTAATAATGTGTGAATATTTGTC 57742 33 100.0 35 ................................. GCTATCACCAGCGACCCCATCCAATTTTTTTAAAA 57674 33 100.0 34 ................................. TACATTAGACGTAGCTGCTTTGCCGGAAAACGCA 57607 33 100.0 34 ................................. TGGTTACTAAGGCCCTGTTTGACCCCGAAACCAG 57540 33 100.0 33 ................................. CGTTTAATGCCGGAGGAATATCCAAACCAGCGG 57474 33 100.0 34 ................................. GATCAGACACAGATTGGGATTGGGGAACATTCTT 57407 33 100.0 33 ................................. CACGAAAAAAGGAGATTGCTATTGCACCTATTA 57341 33 100.0 34 ................................. TTCTGATTTTTGTTGCAGGTGTTTTATTTAAGCC 57274 33 100.0 35 ................................. CCAACGCCTTTATCTTGCGTGTCGGCCCCTGTACC 57206 33 100.0 34 ................................. TTTACCCTGTGGTTATATAATACATCTTTAGAGA 57139 33 100.0 34 ................................. TCGTTTCGACATTTGCGGCATTTTATCACCTCCC 57072 33 100.0 34 ................................. TCACTGGTCTGTGCCAGCCGTACCGATGATACCG 57005 33 100.0 34 ................................. CGCATTGTCGGCAGGTGCGAGTACCTAATGATGT 56938 33 100.0 34 ................................. CGGTACGCGTGATCCCGCTTTCCAACCTGACGCG 56871 33 100.0 35 ................................. CTGCCTGTTAGAAAATCGCTTTGCTCCACGCGGTC 56803 33 100.0 34 ................................. ACTGGGGTAGTCACCGGTTGGCGTGTTTTTTACA 56736 33 100.0 35 ................................. GTCAAGCCCCTGCAACCAGTGAATACCGTACTCCA 56668 33 100.0 33 ................................. TACACCCATACCGTCGGCGGTGGGAATAGTCTT 56602 33 100.0 35 ................................. GGATGGGGTGCGCCGTTTACGGCGCGGGGCCCCGC 56534 33 100.0 36 ................................. ACAAGCAAGCACTTCCACCACGGGTGCAACTGCTCC 56465 33 100.0 34 ................................. TACCGTTACCATAAACGTAAGGCCGCTGTGTATG 56398 33 100.0 34 ................................. CGTGGTTGCACCCTCGCGAAGCGTGAGCGTCCAA 56331 33 100.0 34 ................................. CAGATATTGAGGAACAGATCCTTTACGCTGCTGA 56264 33 100.0 33 ................................. CAGGACGTCAAACCCGGTCAAAACAGTATCATT 56198 33 100.0 33 ................................. CAGGACGTCAAACCCGGTCAAAACAGTATCATT 56132 33 100.0 34 ................................. GCAGGAAATCGTGAGCGCCGAAACCCTTGAGCGC 56065 33 100.0 33 ................................. ATTTTCCGGAAAAACCTATAATGCTCCATCAAA 55999 33 100.0 33 ................................. ATTTTCCGGAAAAACCTATAATGCTCCATCAAA 55933 33 100.0 35 ................................. GTGTTGCATTTGTCTTGATTGCCCGACTAAAGTAT 55865 33 100.0 33 ................................. GAGCGAGGCTCCTGACATTGAGTGCCAGGCACT 55799 33 100.0 35 ................................. AGCTGGCCCGCGTGGCAGGCAGAAAAGCTGAAAAA 55731 33 100.0 34 ................................. CGAGTGGCGGCAAGCTTGAATTTAATTGCGTAAT 55664 33 100.0 34 ................................. AAACCGGATATGGAGAAGCACCGGGGCAATCTCC 55597 33 100.0 34 ................................. AACTGCCGTCTTGTCAAGGCCCCGCAGCGCGGGG 55530 33 100.0 36 ................................. AGCGTGCCATCGGAGTTGACGTTGCGGGCGTTGTTG 55461 33 75.8 0 .C..C.....G.AT.....G...A....A.... | ========== ====== ====== ====== ================================= ===================================== ================== 75 33 99.7 34 GTCGTCCCTCATGCGAGGGACGTGGATTGAAAT # Left flank : TATCCGCGGCGATATCGATGAGTACCCACCGTTTGTCTGGAGGTAGACGATGCTTGTCCTGATTACCTACGATGTGAATACCGAGGATGCAAAAGGCAGCAAGCGGCTTCGCAAGGTTGCAAAGATTTGCGTGAATTACGGGCAGCGCGTGCAAAATTCTGTGTTCGAATGCCTTCTGTCCCCTGCGGAATTATGTATTGTGAAAAGCCAACTGCTTACTGTTATGGACGAAAAGAAAGACAGCCTGCGTATTTATCATCTGGGAAACAATTATAAAAACCGTATTGAACATTACGGAGCGAAACAAACATACAACCCGGAAGATCTGATGACATTTTAACGCGAATCGCAAGCGTACATCAAATCCGCGGGGGATTCGCGCATGAAATTGGATCAATTTATAGTGAGAAGCTTTGCTAATCTGCGATTTATTTTCTTTTTGATGTAAATGATTACTAAGCTTTAATCAAGATCATTTCGCTCAATTTGTTTGTTTTGCA # Right flank : TTGACCAGTCTGACAAATGGTACTTTGTATCTTTTCCCGCCTGCATGTCGAGTTTTACACTGTGCTTCCTCTGGCCGATTCAAGTAAATATTTTTAAAGTCGATGGAACGCCCGGGTTTACTCTGCGTTTACATTGTTGGTATACTATAAACAATAGAAAGCCGGAGAGGAGGCGCATTCATGGCCGCCATTTTAGTCATTGATGATGATCCATATATACGGGAGCTCGTGAGCACCTTACTGCATAATGAAGGCTTCTCGGTACAGGAAGCCCGGAATGGGCGGGAAGCGCTGCAAAAGCTGAGTGAAACGAAAATCGACCTCTGTGTGCTGGATTTGATGATGCCCGAAATAGACGGTTTCGAGTTTTGCGGTTATGCGCGCCGGTACTATGAGGATTTGCCGATCCTGATGCTGACGGCGAAGGGCGAGATCAGCCAGAAGGTGAAAGGGTTCGAGCTTGGAACAGACGATTACCTGACAAAACCGTTTGAAGGCGC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCTCATGCGAGGGACGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCTCATGCGAGGGACGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.50,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 93047-91691 **** Predicted by CRISPRDetect 2.4 *** >NZ_CBYL010000007.1 Clostridium jeddahense strain JCD, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 93046 31 100.0 35 ............................... CCGCCGACCGTGATACTTTTGGAAAATGGGCAGAG 92980 31 100.0 36 ............................... ATGATTATTCCTCCTGTTCCGGCTTTCGAGCGTAGG 92913 31 100.0 34 ............................... AGCACCTTTTTGATGTTCTGGATTTCAGGATCGG 92848 31 100.0 34 ............................... TGGGCAGGCCTATCAGCGCAAGGTGCGCCCGGCG 92783 31 100.0 35 ............................... TCCAATGTAACCATTGGGGATTTTTCTTTTAGCCG 92717 31 100.0 34 ............................... TGAGCAAGTGTTTCTCGCCGTTCCGTTGGCATCG 92652 31 100.0 35 ............................... TATCAGTAATGGCGTGTATGATGGCGAGTTAGCTG 92586 31 100.0 36 ............................... TATAAGTAAATAGTAACACATTATAGAGTAACATTG 92519 31 100.0 36 ............................... CCGTCCCATCAGAAACGATTCCCGGTACTTTCCAAG 92452 31 100.0 35 ............................... TGCAAAATTCTCTCACTGAAGATCAATACAAAGCG 92386 31 100.0 35 ............................... CACTGATCGGATAAACCGGCATTCTGTGTAAAAGG 92320 31 100.0 35 ............................... CGCTCACGAAAGCCTTTGCGGCATCCGCAGCGGCG 92254 31 100.0 36 ............................... GACAAATTACAGCTCACCGCGCCAACGGTGATCTGG 92187 31 100.0 36 ............................... CACGGCAGAGCCGTCAGCGAGGCTGATTTTCCCGGG 92120 31 100.0 34 ............................... CGGTTTTACCTATATTGGAACTACAACCATAATG 92055 31 100.0 35 ............................... ATTCCAGGGAAAGTTGATAATCTAAGAGTGCATGG 91989 31 100.0 35 ............................... TACTCGAACCTTTTCATATCCGAGAGCTTTTACGG 91923 31 96.8 37 ............T.................. ACGGATTTCGTGGGCAATATTCACACCGTTCGCGCCG 91855 30 93.5 36 ............T....-............. CTGCATCTCTGCAATCAGCATAGGGCTGGCGGATTG 91789 31 100.0 35 ............................... GGTAAGGACAAGACTCCGCGCGAGATGAAAGACCG A [91772] 91722 31 87.1 0 .....T...G.A....A.............. | A [91705] ========== ====== ====== ====== =============================== ===================================== ================== 21 31 98.9 35 TCGCTCCCCATGCGGGGGCGTGGATTGAAAT # Left flank : ACCGGTTTTAATGATACTTATCCCTTTTTCCTTTCATTTTATAAAAGCAGGGTACCGTTATGCGGTACCCTGCTTCGCTTTGTGAAAGGTGATTGGAACATGTGGAGCAAATTGCTGCGGATATCATAACAAAAAAATTTATATTCTGATCGAAAAGAATACAATACCTGTTGAGCTTTGTTGGTTTGCGGAGTAAAATAAAAATAATTAAAAATTCTGGAATCTGGTGGGGCAGTGGGCTTCGGATTCAATTTTGAAAAATTATCTGTCTAAAATAGAACACATGGGTGCAAAAATCAGCTGTTCTGTGGAACGGTTTTGATTATGCAGTGCGAACCATCAGCGAACAGAAAACAGCAGGGGTATTCGCGCTGATTTTTGGTAATTTAATTATTTTTCAGAATAATCATTGCATGATTAGCAGATGCGAAATTGATGTCTGAATAAAAGCTTGTGTAAAGACTCTTATTCTATCCGTTCGGCTTTGTCTGTTTTTGCAG # Right flank : TACATGCAATCTTGGTTCGTGTAGTAGCAGAATTGCATCCTTCCATAAAATTTTTGGGCAATCGGCCGCGAAAATCCGGTATGGGATTCTCTGGCGGCTGATTGTCCCACCTTGTCCTTTCTACATATAATGAAGCACCTATCAAAAAGGAGGGTTTGATATGTGGGCTTGGTATCATTGTCATTGGTGGTTCTGCTATAACGGCCACTGTATCCCGTGGTATGATTAAGAAACGAGTGCGGCAATCGAGTCTGATTTAAAGATCGATTGTGTGCAGGACTGTATGAACACATGGATTTTCCATACACTATCCCCGAGGTGATTTTGTATGGATTATTCCGACTTTTCTTTTCCTCAGGCTCTGTCTGAAGATCGCAAGCTGAAAGAGTTTTTTGATTCTCTTCCGGAGCAGGATCAGCTGCGGCTGATGCAGGGCTGCAGCTCCTACGGCGAATTTTACGACAGGGTCGTACAGGCAATCCCAAAATGCTGAAAAAGGG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCTCCCCATGCGGGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.30,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //