Array 1 218950-220503 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXNJ01000001.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain BCW_1581 NODE_1_length_344469_cov_3.86589, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 218950 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 219011 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 219072 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 219133 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 219194 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 219255 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 219316 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 219377 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 219438 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 219499 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 219560 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 219621 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 219682 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 219743 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 219804 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 219865 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 219926 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 219988 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 220049 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 220110 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 220171 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 220232 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 220293 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 220354 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 220415 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 220476 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 236636-238112 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXNJ01000001.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain BCW_1581 NODE_1_length_344469_cov_3.86589, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 236636 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 236697 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 236759 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 236820 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 236881 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 236942 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 237003 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 237064 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 237125 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 237186 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 237247 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 237308 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 237369 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 237431 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 237534 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 237595 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 237656 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 237717 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 237778 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 237839 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 237900 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 237961 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 238022 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 238083 29 96.6 0 A............................ | A [238109] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //