Array 1 407187-406419 **** Predicted by CRISPRDetect 2.4 *** >NZ_VITX01000002.1 Azospirillum brasilense strain BR 11002 Ga0314194_102, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 407186 32 100.0 35 ................................ TTGCGGCAAATGTCAGCGAGCTTCGTCATGGGCGC 407119 32 100.0 36 ................................ GCTAACCACTATCGAAACTCTAGCTTCACGGCGGTC 407051 32 100.0 34 ................................ ACAAGTCCGGCCTCATGAAGTCCTGGGGCGGCCT 406985 32 100.0 35 ................................ CCTCCTCATCTGGCCCCTCAGGCGAGGATGGCGCG 406918 32 100.0 36 ................................ ACGATCCTGTGGGGGCGGGAGTGGCCGCGGAGTTTC 406850 32 100.0 34 ................................ ACGCTCCAGGCCGGGGACAGCCTGGGCACCGGAC 406784 32 100.0 34 ................................ CGGGCTGGCCGGGGCGGCGTGTTGCTCGGCAGCG 406718 32 100.0 36 ................................ AGTGCGGTCGCGATGCTCGACGCCACGCCGTTGAGG 406650 32 100.0 35 ................................ ACCGTCGTGTGGATGGACTTCGACGCCGCCAAGGC 406583 32 96.9 34 .........C...................... ACCTTCCACACAGCGGCCTGCTTCCAGGCGTCGT 406517 32 96.9 35 .........C...................... GCCACCTGCACCGGGTCCGTGCTGGACTTCACAAC 406450 32 96.9 0 .........C...................... | ========== ====== ====== ====== ================================ ==================================== ================== 12 32 99.2 35 GTCGCCCTCTGTGCGAGGGCGTGGATTGAAAC # Left flank : TTCCGAAGTAGGTTCGCATCCGTCGGGGGATTGTGGGTTCTTGAACAAGTGCATAAAGATGAGGAGTCGCCCTCTGTGCGAGGGCGTGGATTGAAACCATCCCCTCTCAGTACAAGATCGTCCAGCTCACGGCCGTCGCCCTCTGTGCGAGGGCGTGGATTGAAACAGGAAGGTGTGCACGCTCGCCCCAACGCACGTCACGTCGCCCTCTGTGCGAGGGCGTGGATTGAAACTGCTGCCAGCGTGGGCATGGCACGTTTCGGCGCGGTCGCCCTCTGTGCGAGGGCGTGGATTGAAACTGCTGCCAGCGTGGGCATGGCACGTTTCGGCGCGGTCGCCCTCTGTGCGAGGGCGTGGATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAACTGGCGCTCGGTCGATCCATGGCGGTAGACCCGCAT # Right flank : TTGTAGCGGTGGGCCTCGTCGACGAACAGGCAGTAGTCGCCCTTCGTGCGAGGGCTGCTTCCTCAAGCCGAATCGCTCCTGTTGTGAAAATCGGTTCATGACGGCTCGGGGAAATTCAGCGTTCCCAGGGCATCGGCAGGTTCAGTCTATCTGTAACTTGATACGGGTGTATTGAGTCATGGTTGGGCTAAACCTGTTGATGTTTTAAATAGGTTAAGTTGGACCGACTTTTGACGGTACTGTTTCCATAATAAATCTTAAGACAAATGGGCCGTCACTGCTCAATTATTATCACTGCTTCGGGTGAAGGCTCACGATGTGCTGCGGCGGTTTGGTTCTGCCCGGTTTAGGTGTGGGCGGGGCGCCATCCGTCTGCTAAGGAAGAGGGTGCGGCCGCCAGCCGCGGGTGACGAGAATGCGAAGGGCGGGAAGCGCGTGTTCGTTGATAGCTTTATGAATGACCGATGCCTCTCATGCGCTGATGTCCGGTCCGTCCATGG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCTCTGTGCGAGGGCGTGGATTGAAAC # Alternate repeat : GTCGCCCTCCGTGCGAGGGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.10,-4.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [36.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 2 407622-407388 **** Predicted by CRISPRDetect 2.4 *** >NZ_VITX01000002.1 Azospirillum brasilense strain BR 11002 Ga0314194_102, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 407621 32 100.0 37 ................................ CATCCCCTCTCAGTACAAGATCGTCCAGCTCACGGCC 407552 32 100.0 35 ................................ AGGAAGGTGTGCACGCTCGCCCCAACGCACGTCAC 407485 32 100.0 34 ................................ TGCTGCCAGCGTGGGCATGGCACGTTTCGGCGCG 407419 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 4 32 100.0 36 GTCGCCCTCTGTGCGAGGGCGTGGATTGAAAC # Left flank : CTGGATGGCTACCCGCCATTTCTATGGAAGTGAATCCCCATGCTGATGCTCATCACCTACGATGTGAACACCCAGGATGCATCCGGGCGCCGCCGGCTGCGCCGGGTTGCCAGAGCCTGTCAGGATTTTGGGCAAAGGGTTCAGTTCTCGGTTTTCGAATGCGACGTCGACCCGGCACAATGGGCCGTTCTGCGTGCCCGTTTGATCGGAGAAATCAATCAAGAGACGGACAGTCTCCGCTTCTATCATCTCGGAGCCAACGCGGCCCGCCGCATCGAGCATGTGGGCGCCAAACCGGTGCTGGATCTCGGTGGCGCATTGATCTTTTGATCGGTGCGAACCGGAAGCGGACACGAAACCCCCGAGGGGTTCGCACGTCATTCTCATCAATGACTTGTGCGGCTCCGACACCGGAATGACTGCTTCCGCGGCCGCTTCCGAAGTAGGTTCGCATCCGTCGGGGGATTGTGGGTTCTTGAACAAGTGCATAAAGATGAGGA # Right flank : TGCTGCCAGCGTGGGCATGGCACGTTTCGGCGCGGTCGCCCTCTGTGCGAGGGCGTGGATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAACTGGCGCTCGGTCGATCCATGGCGGTAGACCCGCATGTCGCCCTCTGTGCGAGGGCGTGGATTGAAACTTGCGGCAAATGTCAGCGAGCTTCGTCATGGGCGCGTCGCCCTCTGTGCGAGGGCGTGGATTGAAACGCTAACCACTATCGAAACTCTAGCTTCACGGCGGTCGTCGCCCTCTGTGCGAGGGCGTGGATTGAAACACAAGTCCGGCCTCATGAAGTCCTGGGGCGGCCTGTCGCCCTCTGTGCGAGGGCGTGGATTGAAACCCTCCTCATCTGGCCCCTCAGGCGAGGATGGCGCGGTCGCCCTCTGTGCGAGGGCGTGGATTGAAA # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCTCTGTGCGAGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.10,-4.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 3 417107-417608 **** Predicted by CRISPRDetect 2.4 *** >NZ_VITX01000002.1 Azospirillum brasilense strain BR 11002 Ga0314194_102, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 417107 32 100.0 34 ................................ AGCGAAAACTGGTTCCGCAGTCCAAACTCGGACG 417173 32 100.0 35 ................................ GCCAGGACCTCGCCGACAATCGGGTGGCCGAGATC 417240 32 100.0 35 ................................ TGCCCCATGAAGATGGGCTCCAGGGCGGGCTTGAG 417307 32 100.0 37 ................................ AGCACGAAGGCCGCCGGCTCGGCGATGCCGACATGCG 417376 32 100.0 35 ................................ CCGCTGGCGTCCAGTGCCTCAAGCCAGTAGTAGCG 417443 32 100.0 35 ................................ TCGACGACCTCGATGGCCGGTTTGAAGCCGTCCTC 417510 32 100.0 35 ................................ CGTCCGCGTCCGCTTGGTCAGAGCGGGCGCGGCGG 417577 32 96.9 0 ....................C........... | ========== ====== ====== ====== ================================ ===================================== ================== 8 32 99.6 35 GTCGCCCTCCGTGCGAGGGCGTGGATTGAAAC # Left flank : TCGTGCGCCAAGGTCCGCTTGCCTCGGCCGGAGCGGCAGTCGAGGCATGGCCTCCTCCCAACGGAATGGACAGCGGTTCGGGCGGTCGTTCGCTCGGCCCGTTAAGGACTTTTGTTCGGGAGAGGGGTGCGGTTGAGTGTCGGAAGAGGATAAGGATCGTCGTAATCGTCAAGGCTGAGGAACGGGTTCCGCTTTCCCCATCTGGGAGCACATGGCGCCCGCCGATGTGCAAACGGTGGGCGGAACACTGATCGGTGTCGAGGCGGCCTGCCGTATCGAGCACAGGGTGTCAAACCGGTGCTGGATTTCGGCGACGCGTTGGTTTTTAAATCGGTGCGAACCGGAAGCGGACATGAAACCCCCGAGGGGTTCGCACATCATTCTCATCAATGACTTGTACGGTTCCGACATCGAGATGGCCGCTTCTCGATTCGCTCCCGATGGAGGTTCGCGCCCGTTGGGGGATTATGGGTTGTTGAACAAGTGCATAAAGATGAGGA # Right flank : CAGATTATTACTATTTCGAATGCTTTGAATCGGGCCATCTTTATCATAGAACCCAAGTCACGCTAGTTCGGATGGACCCTGATTTCTCAGAACATCAACAAAGACTGCCCAAGCGTGACCCGACATAAGCGGCTTCGTCACTGGGAGATGGCCCTGACGGCGAAGTTTTGACGGAGCAGCACCATGGGGCCGATCCCGCAGCCCCGATCGATTGTCCTGCCCTCGCGCCGGTTCTATTCATAAACGGCGTTTCTGACATCGGTCGGAAACGCCCCAGCCATGCCTTCGAACGCGGTGTTTGTCAGGGCAACCACCGAGAGGCCGTTCTTGCGGTCGATGAACCAGGAATGGCCGTAGGCACCGCCCCATTGCAGCGTGCCAGCGGCCTGCGGTGTGCCCGTCAATGCCGGATCGTCCAGCACCGCCCAGCCATAGCCGAAGCCCCAACCCGGCCCCTGCGTTTGCGCCGTCGCGCCGACCTGATCATGGACCATCAGCCC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCTCCGTGCGAGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : NA //