Array 1 650-202 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPWD01000012.1 Pasteurella multocida strain HND02 Contig012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 649 28 100.0 32 ............................ ATGTACTTAATTTGTACTTGGTAGCCTATATA 589 28 100.0 32 ............................ TCGTTACCTGCGGGCGTTCGAATACAGCGGGA 529 28 100.0 32 ............................ GTTTAAAGCGCCTGATTTTTATCAATATCCAA 469 28 100.0 32 ............................ TAATGGCGCACCAGTGTCACAAGAGTTCACTT 409 28 100.0 32 ............................ TTAGCCACCATCTCGGCAATCTCGAGCCGGCG 349 28 100.0 32 ............................ TTAATTTTCGTAATGCAATTTGGGAAATATGC 289 28 100.0 32 ............................ TTAATTTTCGTAATGCAATTTGGGAAATATGC 229 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 100.0 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : TCAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTGGTCTACCGAACACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACCGTGCCTCACTTTTAATCTCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGTTTTTTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ATTTAATCTTGAATTGTCAAACCAAGTGCAACGATTTTTTGAAGTAAACTTCATAAGGTGTTTTCCAACCTAAACATTTACGTGGTCGTAAATTCAGTTTATTGATCACCTGTTGAATATCAACTTCGCTCCACTGATTGATGTCTTGGTGCTTCGGAAAGTATTCACGAAGTAACCCATTTGTATTTTCATTCGTTCCCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [70.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 114854-113266 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPWD01000003.1 Pasteurella multocida strain HND02 Contig003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 114853 28 100.0 32 ............................ TTGTGCGTCCACCAATAACACACTATTTTGTT 114793 28 100.0 32 ............................ CATCTCCACCACTCAAAAAATCATCTAAATAA 114733 28 100.0 32 ............................ TTGTGCGTCCACCAATAACACACTATTTTGTT 114673 28 100.0 32 ............................ AATCTCATTAAAGCATTAGACTTATTGAAATA 114613 28 100.0 32 ............................ ACAAGAGTTCGATTAACTCCTCTTGCAACTCA 114553 28 100.0 32 ............................ ACCAAAGATAAGCCAACAAAGTCTACTGGTGC 114493 28 100.0 32 ............................ AAATTGTTAAAGAACGTTATAAGCGTCTGTTT 114433 28 100.0 32 ............................ TTATGGTTCAACTGCTTTCCCTGCGTCTATTA 114373 28 100.0 32 ............................ TAGTTCTACATCGAACAATGTATGTCCAATCC 114313 28 100.0 32 ............................ AGTCTTTCGCTTTGATTCATGATAGCTTTGGG 114253 28 100.0 32 ............................ ATTCGATACGCTCCTCAAATGTTACCTTATCT 114193 28 100.0 32 ............................ TCACAGTAATGGAATTACAGCAATGTAAGTAT 114133 28 100.0 32 ............................ TTTTGATCTGTAACTTTTTTTCAGCAATACCA 114073 28 100.0 32 ............................ GGGTGACAGTGGCGGCAATACCGGTGCACCAA 114013 28 100.0 32 ............................ AATTGCGGAAAAAGTTGGGTTTAAATTCTGGA 113953 28 100.0 32 ............................ TATATAGTATGCTAGATTTTTTTGCGGCAAAA 113893 28 100.0 32 ............................ ATGTTTTTCCACTTGTGTTTAGTGATGCAGAG 113833 28 100.0 32 ............................ TATTCAACATCTGCGCAAAATTAATTTGTCTA 113773 28 100.0 33 ............................ AACCATTAGCCGTGCGGTCAATGAGCTTTCTAA 113712 28 100.0 32 ............................ TATATAGTATGCTAGATTTTTTTGCGGCAAAA 113652 28 100.0 32 ............................ ATGTTTTTCCACTTGTGTTTAGTGATGCAGAG 113592 28 100.0 32 ............................ AATAGCTGCAAACATATCACCTCCTTAAAATA 113532 28 100.0 32 ............................ ACTCGCTCAACCGTTTTTACAATTTTTCTTTC 113472 28 96.4 32 ............A............... GTCACCATCATTGTCACCATCACCCTCACCAG 113412 28 96.4 32 ............A............... AATTTTACAGGTAAAGAAGTGAAAGTCATGAT 113352 28 100.0 32 ............................ GCGTGCTAGTTTGTCTGCTGTTGCTTTCAAGT 113292 27 82.1 0 ............A.......T..C-..T | ========== ====== ====== ====== ============================ ================================= ================== 27 28 99.1 32 GTTAACTGCCGTGTAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAATTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTCCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATTGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCTATCAGTTTGGGATCCGTGGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAACGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATATCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTAGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 72788-74011 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPWD01000004.1 Pasteurella multocida strain HND02 Contig004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 72788 36 100.0 30 .................................... ACGGCGCTTTCTAAATGCGATGGCGCGAAA 72854 36 100.0 30 .................................... TGCCACCACCGCCACCTTTTCCGCCTTTTT 72920 36 100.0 30 .................................... TTAAGGACAGAATTATTGACAGGAAATACC 72986 36 100.0 30 .................................... CGTGAGCTTTATAACTATACCCAGTTGTGA 73052 36 100.0 30 .................................... TTGTTCCAATGGTAACTGATGCAATCCATA 73118 36 100.0 30 .................................... CGTTTCTGTTGTGGTATTTGCTCGACCAAG 73184 36 100.0 30 .................................... CTGTGGATGGGTGTAAGCCATTGGCTGATA 73250 36 100.0 30 .................................... TTTTACCTCGCCAATTCGCCGTTATCCTGA 73316 36 100.0 30 .................................... AGAGATTTTAAAATATCCAGAACAAGGTAA 73382 36 100.0 30 .................................... TATATTCACTCTCTGTGGTGTTCTTGAGTC 73448 36 100.0 30 .................................... TCTACGCTTTAACGTATAAAAACAATTTCT 73514 36 100.0 30 .................................... TATAATATAGACAACAAGTTAAACAGATAG 73580 36 100.0 30 .................................... TGAGAGAGAGATTCTATGAGTGAATCTTTG 73646 36 100.0 30 .................................... CATCAAGTTCAATGTAACAACCTGTTAATG 73712 36 100.0 30 .................................... CATTGGGTGGTCAACACGATAAGAATCATC 73778 36 100.0 30 .................................... TTAATGATATGACGATGCCATATAAACAAG 73844 36 100.0 30 .................................... AGCAAATACTAAATGTTGTTTACTTTTACA 73910 36 100.0 30 .................................... ACATGAGGGAACCTAGCGACCAATTCCTGT 73976 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 100.0 30 GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Left flank : ATGGATTGCCAATGAATAATGGAATTGATGCGGCAGGTAATCCATTTGGGTGCAATAGTCAAAGAGATAAAAATTATAATAATCAAGATTGATTTATAATTGGAAATGTAATTTTTTATTTAGTAAATGGCTTGATGGATAGGTTAGAAAATGAGCTTTAACGCAAAAAAATATGACACAGGGCGGTCAAGTTATTAAATACATGATCGGTATGTTCATGCAGATTACAAACATTGTCATGAGTTGGAGCTTTATTCTCTCCATAGTGGCTTTTTTTGGCTATATTTTTGCTGTTATGAAATTGGTCTATATTAAACACGCATTTGTTTACATGTATGTGAAATATATTATTTTTAACATAAGTAATAGTCTAAATAAAGCGAATAAGCTTGATAAAATCTATCAATTTGAATGGGAAACTTCAAAAGGTGAAGTCTTCACTGTAACGCGAACTTACGCGGAAATCTTGAAAGATGATTATTTCATTAAATGCTTTGAAA # Right flank : TATCGTGTCCCTTATCCCTTATGGCACAAGGGATAAGGGCGTTTTTAATGCTCAAAAATTACTTGAATTCACGATATTAAGCATTCTATTTTTAGAAAATTTTTCTTAAAAAGTCATTGATTTTGTCTGACTGGGATAACATCTGTTGTATGTTACCCCTGGTTCTGAGATGCGCTAGGCTAAAATAGAGAATAGTCTTTTTGTCTATTTTTATAGAATAGGTAAATAGTTTACTTAGAACAGCAACATTTGATTTGCGTTTACTTTTTTCTCTTGAAGTCTCAATCTCCCCAAGAGTATTTTCATTCCTGCAAATTGCTTTTCTGTCACTTCTAAACAACGTATTGAACCTTCTTCAGGGAGGTGTTCACTGAGCCGTTTATTATGCTTTTGCATGGAGTCTCGACCTCGAATAATTCTAGCATATACAGAAAGTTGTAACATTTGATAACCATCTTTTAATAAAAATTGACGGAATTGATTTGCTGCTTTACGTTTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //