Array 1 3897829-3897024 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025736.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FORC_079 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 3897828 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 3897767 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 3897706 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 3897645 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 3897584 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 3897522 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 3897419 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 3897358 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 3897297 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 3897236 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3897175 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3897114 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3897053 29 96.6 0 A............................ | A [3897026] ========== ====== ====== ====== ============================= ========================================================================== ================== 13 29 99.5 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3916063-3913960 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025736.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FORC_079 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3916062 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 3916001 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 3915940 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 3915879 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 3915818 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 3915757 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 3915696 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 3915635 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 3915574 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 3915513 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 3915452 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 3915391 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 3915330 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 3915269 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 3915208 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 3915147 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 3915086 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 3915025 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 3914964 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3914903 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3914842 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 3914781 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 3914720 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 3914659 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 3914598 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 3914537 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 3914475 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 3914414 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 3914353 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 3914292 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 3914231 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 3914170 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 3914109 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3914048 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 3913987 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //