Array 1 1341239-1340151 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP068054.1 Weizmannia coagulans strain FDAARGOS_1160 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1341238 32 100.0 34 ................................ AACATCACCCAAAAAATTTTGCCACCAACTACAA 1341172 32 100.0 34 ................................ TTGGTCGCGCACTCTAATTTTGATCCTCCTGAAG 1341106 32 100.0 33 ................................ ATTACCTGGCATGGATCCGTCTGTGTACGTTAA 1341041 32 100.0 34 ................................ ACGCAAAGTGGTTATACATCGGTTTCGATTCATT 1340975 32 100.0 34 ................................ CGCTGCAACTTCGTTAATATCAATCGTCAATTAA 1340909 32 100.0 35 ................................ AAGAAATCTTTTGTTCCTCCGAACTAAACAAATAC 1340842 32 100.0 33 ................................ GTCCAGCTTGACGCCTGGTCAATCCGTTCGGGC 1340777 32 100.0 35 ................................ GGGAATCAACAATGACAATTGATCTACCAATTAAA 1340710 32 100.0 34 ................................ GATAATATACTGTTGTGTACTATCTGAAGTGCTA 1340644 32 100.0 35 ................................ TGCTCCGTCCGTGGTTGCCCATCCGGTATTCCTGA 1340577 32 100.0 33 ................................ ATGGATAGCGACTATAAACTCCCAGAAATATAT 1340512 32 100.0 35 ................................ CGCCCTGTGCTGCACAGACTCATAGACTGCCGCAC 1340445 32 100.0 34 ................................ CACCTCATACAAAAAGTTAACAATAACCAAAGCC 1340379 32 100.0 34 ................................ TCAGCCAAAGTAACTTCGGGTTTAGGTTCTGGAT 1340313 32 100.0 34 ................................ TGCTCCGTTTCTTTTTCGGCCGGCTGTACTGTAA 1340247 32 100.0 33 ................................ AAATCGTTAAGAGCGTCTTGATATTGCTTTCTT 1340182 32 93.8 0 ...........T.C.................. | ========== ====== ====== ====== ================================ =================================== ================== 17 32 99.6 34 GTCACACTCCTCGTGAGTGTGTGGATTGAAAT # Left flank : CAGGGCTTTACTTCAGTGCCACTCTTTGGTTTGGGTCAGACGCTTACCAGATACTTAAAACCTAACAGTGGAGAAGGTCCTTAGAATGATTAATTAGTTTTAATAGGATATTCAACATCTGTCGAATTAGACGCCGATGCTGAAATTAATCGTAGTAGTACTGATGACTTTTTGCAGCGGGAAACAGAGTAACACGATTTAGTTCATTTTATATAGTAGAAAAACAAAGATTAACCAGTCCAATTTATCTCGTAAGAACGATTAGTTATAAAAGTGGTTTTTTAACGTGCTGCTTTTTACGACATAGCAGTCTGTAATAAGAATGCTTTTTGGTGTAACTGTGCGAATGAATAGTGTACATGAATTTCCCAAGGGATTCGCACCAAAAATCCAATAGATTTTTCCATATAAAGGAATTTTCGTGTAGCAAAACTTGGGATAATATGGGGTAATTTGTAGATATTCGTCAAAATCTATTAAATTTCTACACGATAATAGCT # Right flank : TTAAGTAAGGGACGTAACAGAAGAGGAATTGGGGAAAGTGTTGGAAGAACAGCAGCAGCAAAAAGAGCAGCGAAAAAAAGAGGAACTGCTAAAAATTGAGCAAGAGCAGGCGTTGCGTGAACAACAGGAAGCAGAAGCCCGCTTGGCGGCGATGTCGAAGGAAGAAAGATTGCTCTTTGCCATACAATCATTAACAGAATCACAAGCAGACCTGGAAAAAAGCAAATCGGAGTTATATGAGGAGGTAATCGCTCAGCAAAATCAGGAAGCTGCTTTAGCCCTCCGACAATATTGGGAAAAAACAGGCCAGTGGAAAGTCAATAAGAAAAAGAAAAAACAGTATGATAAAGTCCTATCCATTAAAAAACTGTTAAATATAGAGTAAAGGCACGGGATCACTGTAAACAGCTTTTTTGATGTAAATAGCGAAAGGAAGAAAACTCTTATTCAAGATTTCTTCCTTTTTTCTATGGAAAATATTCAGCTGCTTCAAATTTATC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACTCCTCGTGAGTGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.50,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : NA // Array 2 1542334-1540983 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP068054.1 Weizmannia coagulans strain FDAARGOS_1160 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1542333 30 100.0 38 .............................. TACCTATAGCTTTTTATACCAAATCAAAAATGTGCACC 1542265 30 100.0 36 .............................. CTTTTTTTGCCACAGTATGGGCAAATTACCGTTTGC 1542199 30 100.0 36 .............................. ATATCCGGCCGCGATCAGATCCTTTGCCTCCTCGCC 1542133 30 100.0 37 .............................. CCCAGATACTGTACATTTAGTTGTAAAACGGTATAAA 1542066 30 100.0 37 .............................. AGGAGTGGTAGCCACGTACCAGTCAAACTGCATTTGT 1541999 30 100.0 35 .............................. ACCGCGTATAAATTGCTAGGCCTTTCCTCGAGTAT 1541934 30 100.0 35 .............................. GCATTTCCGCCATGGCCTGTTTTTCCGTGGCGTGC 1541869 30 100.0 37 .............................. ATTTTTACCCATGCCCCGTTACAAGGGACGTTTAATT 1541802 30 100.0 35 .............................. TGAAGCAGGCCGAGCGCTTTCGTGCGCTGCTGGGC 1541737 30 100.0 38 .............................. TCCCACTCTATATTGGATACATCACCGACCGGATGAGC 1541669 30 100.0 36 .............................. TCCCCTACGCCTTTTATGCTATTTTGTAAGGCGCCC 1541603 30 100.0 37 .............................. AAATGCTTACAAGCACTAAATCGCACCCCCAAACAGA 1541536 30 100.0 35 .............................. CGAAAATGCAAAAACTGGAGATAATCAAAAAGCAA 1541471 30 100.0 35 .............................. TTAAAAAAGCTGGAGTAAGGCATATCCGCCTGCAC 1541406 30 100.0 35 .............................. ACCGCGTATAAATTGCTAGGCCTTTCCTCGAGTAT 1541341 30 100.0 35 .............................. CTCGCTGTGACATAGTAAGGCGTTGTTTTTGCCGT 1541276 30 100.0 35 .............................. TTCGTTTGAGTCTACTAGCTGGACGCGATATTTTT 1541211 30 100.0 38 .............................. GCGACTGTAAAACTAGAGTTGATACGATATAAACCGAA 1541143 30 100.0 36 .............................. GCAGTATTCCAGTCAGTAAACACGTTGGAAAATACC 1541077 30 100.0 35 .............................. AGACAAAGAGGGAGGCACAAATTGCCGCCGCCGAA 1541012 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== ====================================== ================== 21 30 99.8 36 GTTAGTATTTTACCTATGAGGAATTGAAAC # Left flank : TGGAAAAGAAGCAGTTCAAACACTCCTTCAGTAAAAAAGGTTGCCCATACGATAACGCCTGCATTGAGTCTTTCCATGCAATTCTGAAAAAGGAAGAGATCTACAGAGTCAACTATTTGAACTTTCAAGCTGCCAGAAGAGCCTTATTCGAATTTATAGAAGGCTGGTACAATCGGAAACGGATTCATAGCTGCTTGGGCTATATGACGCCACAAGAGACAGAAGACAGTATCAAAGGGGCAGCGTAGTGCTCTTCACAATTTTACAAGCATCCGCTTTACATGGAGTGGCGGGTGTGGCAGGCTTGTTTGCCATGCGAAAGAAATCATTGCCCCTTTCGCCCTTCGCATAACACCACGCCCGCAGAGGCTCCATGTCAAGCGACCAGCGATGTCATGAAAAATATGGCATGAGATCAAAATTAAATTTCACTTATTGGTGTCCAAAATATTGACTTAAATCCAGGGTGTAAACTGGGTTTTAAAACGGGTAGGTGCTAA # Right flank : ACACTCAATATAGCCAGTGGGAAGTTAATTTCTATTCTGAAAATATGTGCCGACTTGATTTTCATTCACCCGCTGGTGTCGCGTTCACTGCGGCACGGACTCCTAATTGAATAAGAAATAAGTCACTTTCACAGTCTATCCCGCTGAATCAAATTTAACGGCTTTCCGAAAGAAGTCTCCCATCCTCAAGGAATGTGAAGGTGCGAATCGCACCAATGAGTAGGTGGGAGATGAATTTCGGTTGGCTTTAGCCAAAGGTTTTGATATAAACAGTCTTAGATGGAATAAAGGGTTGATATATCAATGAAATTAGATAGTAATAATCATTCAGTATTCCTACTGCATTATCACCTTGTATTGGTTGTAAAATACCGTAGACAAGTATTCGATAGCGAAATATCTGATTTTGCAAAAGATATGTTCGCTGAGATTGGAAGTAAATAGGGCTTGCTGAACGAATCAAATTTGGTCAGATACAAGCCAAATTCCGATTATCAAAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGTATTTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 3 1544113-1543820 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP068054.1 Weizmannia coagulans strain FDAARGOS_1160 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1544112 30 100.0 36 .............................. AGGCTTGATCCAAAGTTAAACTCTCAATCGCCTCTG 1544046 30 100.0 36 .............................. TTTGGCATAACCCATTGGTCTGTCTTCACTTGCCTA 1543980 30 100.0 35 .............................. ATTTTTACCCATGCACCGTTGCAAGGAACATTTAG 1543915 30 100.0 36 .............................. CATGGACAGGCGTTCAGAAAGCTCTGTCCGGTATTA 1543849 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 100.0 36 GTTAGTATTTTACCTATGAGGAATTGAAAC # Left flank : AGTCAAAATATGGATTCTCGATGGGCAAGATTTCAACGCATTCATTTGACGCCAACCAAATGGATCTGCTGATTAAACTGCTGGCATACAATTTATTCGAGATCTTTAAAAAAGAACACTGTCCGCCAGCGTATCGCTCTTATACGATCAGGCGATTCCGGAGGGAATTCATCTACGCGGCTGGCGTGCTGGTCTATCACAGCCGAAGTGTCATTTTAAATATTTGTGAAACATACGCCCATAAAAAGGCATTCCGGCAAATGATTCAAAGTGTACGGCTGATTGACTGAGTGTGAAGGCTGAAACAGAATACTGGAAATTGAAACGCCCGCAAATGTGGGGAGGGGGCAACTGTGGCCTTAATAACCCAAAAATAGGCAGTTGTGATTCCATTTTTGATAATATTATCCATTTATTTTCCATATGATTCCAATTACCTGCATCAATCTAGTAAAGTTTTGCACTTTCTTAATTTGGGATAATATCAGTGAGTTTTTGGA # Right flank : AGGGTGATGCTAGTATAGTTTCATGGACACCCTTTAGTGAAATATAATATTAACGAAGGGATGTGTCCTGATATGGGTAACACAAGCGAAAAACGTAAAAGTTATCATGCTGAATTTAAAGAAATGGTGGTTGAGCTTTATCAAACTGGAACACCAGTAAAACAGATCTGCAGCGAATATGGCCTGTCTGAAACGACAATCTACAAATGGATCAGAAAACAAAAACCGGTTAAGCTGGATGACGGGAGCTCTTTTACCCCGGAAGAATTTCTGAACCTGCAAAAAGAATTGCACCGGCTGAAAGAGGAAAACGAAATCTTAAAAAAAGCTATGGCCATATTCGCAAAGAAGTAGATCAAACCACTGTTATATCCATGATTGACGAGATAAGAGCCAAACACCATTATGACCTTAAAACCATGTGTACGGTCCTTGGCGTGCCGAGAAGTACCTACTATCAATCCAAACAAAAAAAGAGTCAAAAACAAAACGGGAAAACC # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGTATTTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 4 2535017-2540317 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP068054.1 Weizmannia coagulans strain FDAARGOS_1160 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2535017 32 100.0 34 ................................ TAAACTATTGTTACCAGTCCACCCGCCGACATAA 2535083 32 100.0 34 ................................ CGTACGAGGAAAACACGTTCTTACTAAGTGGGGA 2535149 32 100.0 32 ................................ AGGTTACTTTTAAAGTCGTAAACTCTCCCGAC 2535213 32 100.0 34 ................................ TTTGGATACTGCTGGCGGGACTACGTCGGATAAT 2535279 32 100.0 33 ................................ TAACAGCTTGTTATCAACCGTGTTTCCTATACG 2535344 32 100.0 34 ................................ TTGCCTATGCTGTACAGACTCATAAACCGCGGCA 2535410 32 100.0 33 ................................ CTTATGATTTAATTATAGCATGAATGTATTTAC 2535475 32 100.0 33 ................................ GCCGTTCACCTTTAGTGCGAACAGCCCTTTTGC 2535540 32 100.0 33 ................................ AAGTATTTTTTTGCGTGTTGACGTGTTGGCGGT 2535605 32 100.0 34 ................................ CCTTTGTTCTTTCGCTATAATTCTATAATTATCC 2535671 32 100.0 33 ................................ CACTTAGTACTATGTTAGGCATTATGGTGACGT 2535736 32 100.0 34 ................................ TATCTTTTTCCGCGCAAATTTAGTGAACTTGAAC 2535802 32 100.0 33 ................................ TTCGCTCATCTCACTGCTTTTGTTGTAAGTGGT 2535867 32 100.0 33 ................................ TTTAACCGGTAGCAGTTGGCGTGCTTCATCATT 2535932 32 100.0 33 ................................ CTTACGAAATGGAAAGGTTTGTAAATTGAATTC 2535997 32 100.0 34 ................................ CGGCATCAAAGTAACTAAAGATGTAGCGGATCCT 2536063 32 100.0 34 ................................ TTATCCCTTATAACAATCTTTATGGATAAGTGCA 2536129 32 100.0 33 ................................ AAAGTCTGGATGTGCTGTTCTATCTTTTTCCGC 2536194 32 100.0 34 ................................ ATACTATGCAGCCTGGTATATTCCGGGTCAAAAG 2536260 32 100.0 34 ................................ CGCCACCAGTTATCCAGTTGAAAAAGGGTCGCCA 2536326 32 100.0 33 ................................ TTTACAGTGGATCTTTATGATGCAAGCTTGAAT 2536391 32 100.0 34 ................................ TAATGTCAGCGCGGTTGTAAATCCAGAGCCAACC 2536457 32 100.0 33 ................................ TTATTACAAAATATTAATCCGAACTCGAGGGAG 2536522 32 100.0 34 ................................ GTATATCTCCTTGAAGTTCCAGTCGACCTGCACA 2536588 32 100.0 34 ................................ GCTCGTGCAAATGGTGATGGCTGGCGGAATTGCT 2536654 32 100.0 34 ................................ AAAAGTAGATCTGTACACAGGATCCCATTTTTAC 2536720 32 100.0 33 ................................ TACGGTGATGAAATGAGAGATTTACTCCATAAA 2536785 32 100.0 34 ................................ CTGACTCAAGGCATATAGTTGCATGGGTATGTCT 2536851 32 100.0 34 ................................ GAACCAACGCTGAAATAATTCCGATACAGTGATA 2536917 32 100.0 34 ................................ ATCTTGCATTGCCTGTTGCTGGATCTCGATACTG 2536983 32 100.0 34 ................................ CTTGGGGGATTCCGTAGCGCGTATAGTCCCAATC 2537049 32 100.0 34 ................................ GTGCGAGCATGTGAACGCTTTATCCTCATCAATT 2537115 32 100.0 34 ................................ AAATGAAATAGCTACCGAATTGGAAACGACTTTC 2537181 32 100.0 35 ................................ GCCATCGACGACTTGCCTATGCCAGCTTTTTTGGC 2537248 32 100.0 34 ................................ ACCGCACGCTATTTCGCCTAATATTGGTACATAT 2537314 32 100.0 34 ................................ CAGGCGCTGGTACCGTCAAGTTCTGGGAGTTCGT 2537380 32 100.0 34 ................................ TTATAATTTTGTTAGCAGGCGTTCCCAATTGTCC 2537446 32 100.0 34 ................................ CAATTGCTACCGTCCCACCATTCATATACCATTA 2537512 32 100.0 34 ................................ CCGGCCACAGATACGCTGGTTAACCTGCCGAAAG 2537578 32 100.0 34 ................................ CCGGCCACAGATACGCTGGTTAACCTGCCGAAAG 2537644 32 100.0 34 ................................ CTCAGCCGGTTCATCGTCTTCCACAGCTTCTTTC 2537710 32 100.0 34 ................................ ACTCCCTCACATTAAAAACTTTTGCACAAGGCTA 2537776 32 100.0 34 ................................ TTCCATATCTTTTTCCTTCATCGGATCAACAAAT 2537842 32 100.0 33 ................................ GCCAATCCCGCCTGTAGAATTATTCCACCCGTC 2537907 32 100.0 34 ................................ CATGTACTTTTCTACATCTCGGCCAATCTTTTTT 2537973 32 100.0 34 ................................ AATTTCGCCGGCGGTCAACAGAATCGGGCGAAAA 2538039 32 100.0 35 ................................ GCCAATCCCGCCGGTAGAATTATTCCACCCGTCCC 2538106 32 96.9 34 ........................T....... ACTTGTGATTATTACTTATAACATTACTTTATAT 2538172 32 100.0 33 ................................ TTTTGATAAGCCGTATGGCGGGTCTGTTACGAC 2538237 32 100.0 34 ................................ ATAAAGGAAAGTTTGAACGATGAAGGAAAGTACC 2538303 32 100.0 35 ................................ CGATTCCTTGTATGGCTTTCTTAGTACCAGACATG 2538370 32 100.0 34 ................................ AGTAGGAGGTTTATGATGATACAAATTTTTACGG 2538436 32 100.0 32 ................................ ATTCCCTGTATATCTACTTGCAATTTCATCGC 2538500 32 100.0 34 ................................ TTTCCTCAATCTTTTTATTTTTTCTCCTGGCCTC 2538566 32 100.0 35 ................................ CAAACGTTATCTCCAATATTTTTAAGTTTGTCCCA 2538633 32 100.0 35 ................................ CAAACTGCTTGACGTTGACCAGGTCACGCGGTCAG 2538700 32 100.0 33 ................................ AAAATCCATCGCTGACTTTGTCGCCAGTCCAAG 2538765 32 100.0 36 ................................ CTTGTTTATCTTTCGAAATAAGCTCCAGAACGCAAT 2538833 32 100.0 34 ................................ TTTCAGCCAAACGTGACTGCGACCGGTGCGCTCT 2538899 32 100.0 33 ................................ AAACTTGGAAACCGTGATAGCAACCTCATCGGA 2538964 32 100.0 33 ................................ CACATCAACGCGGCTTTCGGCCGGGGCAACGAT 2539029 32 100.0 34 ................................ TGATAGTGAGGTTGCACAGAACCCACTATTTTTT 2539095 32 100.0 35 ................................ TTTTTCGGCGGGAGCCGGCCTGTCCACCCGCAGAC 2539162 32 100.0 33 ................................ CTGCATAGCCTGTTTTTCCGTGGCATGCCAGCT 2539227 32 100.0 34 ................................ CGGGTCGATCAGGTACACGTATGCCTTCGAGTTG 2539293 32 100.0 34 ................................ ACGATGCCTCACCTTCCTGGTCGCGTTCGATGAT 2539359 32 100.0 34 ................................ ACCTTCCCAATACACTGTATTATCAACTGCAAAG 2539425 32 100.0 34 ................................ CCCATCAAGTAAAAGCAGTTGAAAAGCTATCGAA 2539491 32 100.0 34 ................................ CGAAATGATAAGCAATCCCATTCTTAATGTAAAA 2539557 32 100.0 34 ................................ AATGATGCTGACTAAACGTGACCGCGCCATTATT 2539623 32 100.0 35 ................................ CTGTTGATAAAGCCATTGGCCAACAATCAGCGCAC 2539690 32 100.0 33 ................................ CACAGAAGCAAACCAAATGGCTTCCAGGCTTAA 2539755 32 100.0 35 ................................ CAACGTTTCGCCTAACACCGTCGCGCCACCTCCGG 2539822 32 96.9 35 ...T............................ CTCCTCGAAGTAGGCGACAGCTTGAATGACATAAA 2539889 32 100.0 34 ................................ AGTATTGGAAAAGTAGCCATGGGATCCGCGACAA 2539955 32 100.0 34 ................................ GGTATCAAATCCGTAATCTTCGAGAGCCTTATTT 2540021 32 100.0 34 ................................ CGACATAAGCTAATACCGCCGGAATCCCTGCCAG 2540087 32 96.9 33 ............A................... CAGCAAAAAACAAAACCGTGGGGGCCTTACCCC 2540152 32 96.9 34 ............A................... CTTTTGATAAATGCATTGCACGACCGGATGAAGT 2540218 32 93.8 34 ............A......A............ GTGAATCCAAAAGGTAGATAAAGAAACCTATGCC 2540284 32 78.1 0 ..........G.A.......A..A.A.A...C | G,A [2540287,2540299] ========== ====== ====== ====== ================================ ==================================== ================== 81 32 99.5 34 GTCGCTCCCTACGTGGGGGCGTGGATTGAAAT # Left flank : TGAGTATCCTCCTTTTCTGTGGAAGTAGGTGGAAGATTTTGCTTGTTGTCATTACTTATGATGTGAGTACTTTGACCGGAGCTGGGCAGAAAAGGCTGAGAAAAGTGGCGAAAGTTTGTCAAAACTATGGCCAGCGTGTTCAGAATTCTGTCTTTGAATGCTATGTTGATGCAACTCAATTTGCATCTTTGAAGATTGAACTGTCTAATATTATTGACCCGGACGAAGATAGCTTGAGATTTTATCAGTTGGGGAATAACTATAAAAATAAAGTAATGCATATTGGGGCAAAACCATCTTTGGATTTAGAGGACCCATTGATCTTTTAGAGTGCGAAGGTGTAGCGCACACGATTTTTCCTGTGGGTTCGCACCATAATATTAACCAATATTTTACATATATTGGTCTTGCTTGGTAAATAGTTCTTTGTTTTATCAGAGGAAATAGCGGAATTTGGTTGTTTTGAAAACACACATTCGCATTTTTTGCCAAATTCCGCT # Right flank : CAACATCCACCAAATAGAAACAATTTTTGATCTTTTCTAAAACTTAACCTTTGATGCAACGCTTGGCATTCCCGATGGAATTGAACAATTATTGCTGCCAGAAGTGCTGCCGGTAATAATTCCGGTTCCTACTGTTCCATGCAGCCTTGCATGCAGCTGCCTGGCCAGAAAGAAAAGAGCCCAAGTCCCGCCTGCAGGAATAATAAAACAGAAGCAAGCAGCCCTGCCCAAAAAAGATTTTAAAGTTTTTCCCATTGAAGGCTTGCTGAGCGAACCAGACAAAGCTTTATCTCTGGTTCGCTCAGCCGCAAAACTGGTTGATGCCGCCTTCTTTTTTCTTTAAATCCAAAAAGAGGCGCAGATCGTGCAGGCAGCAGTGACAAACCCTCTTTGTGAAATTGCCCTTGTTTTTATAGTCCCCCGAACCGGGTCCAGGGCTTTTGCTTATTCAGCAGCCCCCGATTATGTATTTCTGTCATCCTCATCGTCCAGTTCCCTGA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTACGTGGGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCCCTACGCGGGGGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //