Array 1 416095-418625 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIRCC010000002.1 Salmonella enterica subsp. enterica serovar Mississippi strain FSL R6-0384 scaffold2.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 416095 29 100.0 32 ............................. CTACAGGATCTAATTTTGATGGATCGGCATAC 416156 29 100.0 32 ............................. ATAGAGGATATAGACTATAATTTAGTTGTTAA 416217 29 100.0 32 ............................. CAGGTGCTTGGGATGGATGAAGTTGACGGGAT 416278 29 100.0 32 ............................. CGATCGGGGAAGCGCTCCGGGTCAGCAAATCA 416339 29 100.0 32 ............................. GCCGGGACCGCCGAGTCAGCGATCACGGTGAC 416400 29 100.0 32 ............................. TTCATTGCGAGATTCAACAAATCGCTCCGGGT 416461 29 100.0 32 ............................. CCTGCCGGAAACGTTTTTGACGCAACAACGGT 416522 29 100.0 32 ............................. TAACGGTGTGTGGGTCGGAGATGCCTCTGATG 416583 29 100.0 32 ............................. TTTATTATTTACGGCAGGGGCTAAGAGTACCA 416644 29 96.6 32 ............................C ATAATTTCATTATATACAGTATCTCCCGATAC 416705 29 100.0 32 ............................. ATAATAAAACTTTCATGATACCACCTAATCAT 416766 29 100.0 32 ............................. GTGGTACAATCGGAGGTGAAGGGGGTGTAAAA 416827 29 100.0 32 ............................. GATTAATATATGGCAGATACAATCGTTATTCC 416888 29 100.0 32 ............................. TAATATGAGTGAAAATAACAATTCATATTTGA 416949 29 100.0 33 ............................. GTAAATCAACTACTAATAGATTTTTATTAGTAC 417011 29 100.0 33 ............................. GTAAATCAACTACTAATAGATTTTTATTAGTAC 417073 29 100.0 32 ............................. GTAAATCAACTACTAATAGATTTTTATTAGTA 417134 29 100.0 32 ............................. CGACCAGGAGCTGCTCACGGAGAGCTCGCTGG 417195 29 100.0 32 ............................. CTATCATTAATAGATAATGTAATAGAGGCTAA 417256 29 100.0 32 ............................. TGATTGAGCTACATTATAAACGAATGATGAAT 417317 29 100.0 32 ............................. AACTGCAATTATTTATAGTAAATTATCCAGAA 417378 29 100.0 32 ............................. AATTTGCTCTCACGCCTGGCGACCCGTCTCGA 417439 29 100.0 32 ............................. TAATAGAGGCTAATATGTTTAAACATAAATTA 417500 29 100.0 32 ............................. CCAGTACCAATTGTCAAATAACCGCATTTAGC 417561 29 100.0 32 ............................. ACGGGGGCGTCATCCTCAACAGTGCAGGCGAT 417622 29 100.0 32 ............................. CCGGGGCCGCTTACGTGCTGATCCTGACGCTC 417683 29 100.0 32 ............................. ATGGACGAGAGAGAGCGGAAACATCATGTTGA 417744 29 100.0 32 ............................. TGTGATCTGATCGCCTCTGGCGTCACTGTACG 417805 29 100.0 32 ............................. GAGTATAGTTCTATGGGCCTGGAAAAACAGAA 417866 29 100.0 32 ............................. ATGGACGAGAGAGAGCGGAAACATCATGTTGA 417927 29 100.0 32 ............................. TGTGATCTGATCGCCTCTGGCGTCACTGTACG 417988 29 100.0 32 ............................. GAGTATAGTTCTATGGGCCTGGAAAAACAGAA 418049 29 100.0 32 ............................. GCAACCAAAAAGGCCGCGAAATCGCAGCGCCG 418110 29 100.0 32 ............................. GGTGTAATAATAATTGGGATAAATTCGTAAGT 418171 29 100.0 32 ............................. TGAATAATATTACTCCCTTTTAAGGGAGTTGG 418232 29 100.0 32 ............................. TGCTTCTTCTGGATTTTCTTTAGGTTTCTCAT 418293 29 100.0 32 ............................. TGACTGTATCAGCCGCAGCAAACGCACACTCC 418354 29 100.0 32 ............................. TTGCCAACCCACAGCAGTCCGTCAGTAAAATC 418415 29 100.0 32 ............................. GTTATTCTCAAAACACCGCTACGCCGGGGTGA 418476 29 100.0 32 ............................. ACCATTTATTGCAGAGATCGTAACATCTAACC 418537 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 418598 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGTTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCTGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 435184-438386 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIRCC010000002.1 Salmonella enterica subsp. enterica serovar Mississippi strain FSL R6-0384 scaffold2.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 435184 29 100.0 32 ............................. CATTTTTAGTTAAACTAGCTAATAATATAATA 435245 29 100.0 32 ............................. TGTGGCTTATATGAAATTTCCTATTAACATGT 435306 29 100.0 32 ............................. GTTGGGTAACTGAATATGTTTCTAATAATAAT 435367 29 100.0 32 ............................. AGAAGCGGGTGCGTATGCCGGCAGCAAAAATC 435428 29 100.0 32 ............................. ATGTCCGTAATCATTTTGGTCAGCCAGTATCA 435489 29 100.0 32 ............................. TTTCAGGCAATTTTTTCCGGCAACGGAACGAA 435550 29 100.0 32 ............................. CCACATTGAAATGCTCGAGGACGCCGCAGACC 435611 29 100.0 32 ............................. GCCGAATGCAAAACCCCCGCAAACAGCAGCAA 435672 29 100.0 32 ............................. TTTTATGTATGTATCTTTCAATATCAAAATAT 435733 29 100.0 32 ............................. AATTCCCGACCCCATCAGCAACATTAACTCCG 435794 29 100.0 32 ............................. ATTAACCCTCAAATGTGGTTATTTGCGCAGGC 435855 29 100.0 32 ............................. ATAGATTCTCTTAAATCATTCATTAATTTAAA 435916 29 100.0 32 ............................. CTGAATTGCTGCATCCAGGCGATCCGACCATG 435977 29 100.0 32 ............................. GATTAGTTTTACTGTAAGCCTTGTATGAATCT 436038 29 100.0 32 ............................. CCCCATATGGTATGGGGCCAGAGTAATCAGGT 436099 29 100.0 32 ............................. ATGCTGGATCAGCCACCACAACCATTTACCGG 436160 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 436221 29 100.0 32 ............................. GCCGCTTTTGTGGCTGTTTCCGCGAACTTAGC 436282 29 100.0 32 ............................. GGGATAAAGGGGACAAAGGCGATCAGGGTGTA 436343 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 436404 29 100.0 32 ............................. GGGTACCGGACAGGCCGATCACCTTTGTCTGC 436465 29 100.0 32 ............................. GTGAACATGATGCCTGGAGCACTATTTACAGT 436526 29 100.0 32 ............................. TCCCATTTATCAGGTGGCAGCGGCATTGATTT 436587 29 100.0 32 ............................. CCAGTGATAAAACCGCTGAAAAACGCCTTAAT 436648 29 100.0 32 ............................. GGATCAAACGGGTTACAATGCCGTCACTGAGT 436709 29 100.0 32 ............................. CGGTACCGAAAAAGAGTCCGTATTAAACGCAA 436770 29 100.0 32 ............................. AATGCAGTTTCACGCACACCTCGCCGGCAACG 436831 29 100.0 32 ............................. AACTCGCCAAATGGGAAGCGCGCGTTGAGAGC 436892 29 100.0 32 ............................. CCAATGGAGAGGACGCGCAAAAAACTTCTCGT 436953 29 100.0 32 ............................. TTCCGTCCGGGCTGTCTGCGCCAATCGTAATC 437014 29 100.0 32 ............................. TTCGATTACAGTAAAATTTATGTTTATTCAAT 437075 29 100.0 32 ............................. AGAAGATATTAAACCCCATATAAACCCCACTC 437136 29 100.0 32 ............................. TGTGCCCGCTGACAATACCGTGGGTGTAGGCC 437197 29 100.0 32 ............................. GGCCGTATGGCTGCGCTACTGGATGAATTGAT 437258 29 100.0 32 ............................. ATCGCCTTAACTAAGTGCTCCGCTTCTGGTAG 437319 29 100.0 32 ............................. ATCCGATCCACATCAGCAGCCAGCTCTTTAAA 437380 29 100.0 32 ............................. GCGATGTCGTGTCTGCTACTCCCCATAATGGC 437441 29 100.0 32 ............................. CCCCGGTCATTTCCTCTGATATCAACGAGTTT 437502 29 100.0 32 ............................. GGATCTTCATCGGATTAGACAAAGAGAAAACC 437563 29 96.6 32 ............T................ GTCAACGAGGGATTGAATTGGTGGTGTATTGG 437624 29 100.0 32 ............................. ATACATTCCTTACTCCTCGCACATTCACGAAT 437685 29 100.0 32 ............................. GAGCTGTATACAAACGGGAATATTCCGCTATT 437746 29 100.0 32 ............................. GTAATTACCGCACAGCGCATGATTTTAGTACG 437807 29 100.0 32 ............................. CCACAGCGCGAAAGAGGTCTATTCCTGGCTGT 437868 29 100.0 33 ............................. CTACAATGTCAAAATGATGCCAGTTATCCTGGT 437930 29 100.0 32 ............................. AAAGAAGAAAATACAATGCTTGTAATGATGAA 437991 29 100.0 32 ............................. GTTTTTTCTCAGCGGCTGGCAGACCTGATCGC 438052 29 100.0 32 ............................. CGAGAAATGAGTGCCATTTAAACCCCGCCCGT 438113 29 100.0 32 ............................. TGCCGACGATACCCTGCAAAATCTGCGGCGGT 438174 29 100.0 32 ............................. TTCGCCGTCGTGAAAGCGGGTGAGCATTCCAG 438235 29 100.0 32 ............................. GCTGATAGCCAACCTGTAAGTGATCGTGATGA 438296 29 100.0 32 ............................. CTTTCTTCAGACATTTCTCCAACCCGGCAACC 438357 29 100.0 0 ............................. | A [438384] ========== ====== ====== ====== ============================= ================================= ================== 53 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGTACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //