Array 1 14644-10524 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTO010000038.1 Aphanizomenon flos-aquae FACHB-1287 contig38, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================================== ================== 14643 37 100.0 37 ..................................... CCTGCTTGGAAAAATAAATTTCCTTTTGATATGATTT 14569 37 100.0 35 ..................................... AAAAAAGGAATTCTCGATAATCAGAAGCTAAAAGC 14497 37 100.0 35 ..................................... ACAATATGGTGGCATGTCTTCCATTTGTTGTGCAG 14425 37 100.0 35 ..................................... TGTCCACAAAACCCCACAAATTCTTCAATCCCAAA 14353 37 100.0 35 ..................................... TACAGCCAAATTATTTGTTAGAACTGCATAATGGA 14281 37 100.0 33 ..................................... TATTAAAGTCAACAGCAGATAACAAAGAAATTT 14211 37 100.0 36 ..................................... GGAGGCTAAGATGCACTGCCAAGCACTAAACAGGAA 14138 37 100.0 33 ..................................... ACTTGATGGACTCTGAGAAATTTAGAATAGGAT 14068 37 100.0 37 ..................................... TAATTAAGGATGCGATCGCCTCTATCCAAGAGGCTTT 13994 37 100.0 36 ..................................... ATTTCTTTAGAATTTATGGTACAGGATTAGCTAATA 13921 37 100.0 35 ..................................... CGAAAAACCAGCTAAGTACAGGGTCAAGCAGGGGA 13849 37 100.0 38 ..................................... AATTGACTGAACTTTGTAGCTTTCTGAATTTTCAGCAG 13774 37 100.0 40 ..................................... GGCCGAAAATTATAGCAGATATTAGAAGAATGAATAAAAA 13697 37 100.0 34 ..................................... GTCCCGTGAGCAATTCCCGCGTCTTTTGAGAGTA 13626 37 100.0 40 ..................................... CAAAGCTTCATTTAAATTCCTTAGGCTTTGCTCACCGCAA 13549 37 100.0 36 ..................................... TTGCTACAGGCTTCCTTATGTTGGGTGTGGTTCTTT 13476 37 100.0 33 ..................................... CTTATTTAAGTAATGAGTATATTGGCCATTTTT 13406 37 100.0 31 ..................................... ACAGGTAAGTCTGCACCACCTTCTGGTGGGA 13338 37 100.0 35 ..................................... GCAATATTATCCAGAGATCCAGCAAGAAATGAAAA 13266 37 100.0 40 ..................................... ATCAAAAATCAAATCCAAGCTTGCTTACGGGCGATTGCAA 13189 37 100.0 31 ..................................... GGCAAACCTAATAATTTATGCGGGTAAAAAC 13121 37 100.0 34 ..................................... ATAGTCCCTATTAGAGAGGATTGGGAGATGTATA 13050 37 100.0 34 ..................................... GGTAGCATAAATTTCTAGACCTCTATAAGAACCA 12979 37 100.0 37 ..................................... AGAGAACAAAACGATATTATGAAAGCAGCGAAGGAAT 12905 37 100.0 36 ..................................... CTACGGTGAATTTTTGGGGTAAAGACAGAGAGATTT 12832 37 100.0 36 ..................................... CGACATATGAAAAGTATTTTACTTTGCATATCTCAA 12759 37 100.0 36 ..................................... TCGAACAAGATAAATATGCTTCTTGGATTTCAAATC 12686 37 100.0 33 ..................................... TTACTTTTTTTTCTAATTCTGCTGCATTCGCCT 12616 37 100.0 38 ..................................... ACAAGAAAATGTAAAGGAGAAAAGCGATTCTGTTGTTG 12541 37 100.0 35 ..................................... TAAACTGCCTGAAAATACTTATCATTTTAGTAGGC 12469 37 100.0 35 ..................................... CTGCTATTTTTGTTGCTTCTAAGGCTGAAGATAAA 12397 37 100.0 35 ..................................... TTACCAGAGATTGGGAAGAAAACTTCTGATTTAAG 12325 37 100.0 35 ..................................... AGTGCGGAGATTAACGCTACCATGACCCGGCTGGG 12253 37 100.0 35 ..................................... GGGATACACCCTTATTAGGAGCGCTTACCACTGGG 12181 37 100.0 34 ..................................... GGCATTTAGACCTGAAGAAATGACAGAAGAACAT 12110 37 100.0 32 ..................................... CAAATCTGAAAATTTTCAGGGGTGAAAAAATA 12041 37 100.0 36 ..................................... TTTTCTCGAAAAGATGGTAAAAGAATGAAAATGGAA 11968 37 100.0 34 ..................................... AAGAGGGTGGCAAGATGGCATGGATACCTGCAAA 11897 37 100.0 34 ..................................... GAATAAAGTTCGAGGGCAAGGTTAGAGCCCAAAG 11826 37 100.0 40 ..................................... GAAAAATGAGATTTACTACTACCAGGTTTACCGTATACTG 11749 37 100.0 37 ..................................... CAATATACCGACAGACTAAATTTTTAGAGAGCCAATC 11675 37 100.0 34 ..................................... GTTAAATACGCGATCGCTAATTATGACTCTGAAA 11604 37 100.0 36 ..................................... AGATTGTGATTGAACAAATTACCGCAGATGTTTCTA 11531 37 100.0 39 ..................................... TTGAATTTCGCTACTGAAGCTATTAACAAACATTTTGGT 11455 37 100.0 37 ..................................... GTAATTATCTTTTTTCTGTTTATATTTTTGTACCATT 11381 37 100.0 36 ..................................... CGGCATCGAAAGCAATATCTTATTTGTGTGGCGCAA 11308 37 100.0 41 ..................................... TTCCGTCACCGTCAAAGTCGCCACCGCAGTCCTGAGAACCA 11230 37 100.0 38 ..................................... TTAATTCTTCTACGCAAGAGCGATCGCGCATTAACCAG 11155 37 100.0 34 ..................................... AATTCAAAGGATGATCTAATTTCTGGCAAAAGGC 11084 37 100.0 35 ..................................... GAAAGATGGACCAGCTTCGCTGCCGGGATCTTTAA 11012 37 100.0 38 ..................................... TTTTTGTTTCTTTTTACCATTTTAAATCTTTTCTTCCG 10937 37 100.0 35 ..................................... TTCTACTAATCCAGAAGAAAATAAAATGTTCCGCG 10865 37 100.0 34 ..................................... AAGTAAATCAAGTTTTTTAAGTTTAGGAGTAATT 10794 37 100.0 31 ..................................... AACTTGTTATGCTAACCGATATGCCACTTTT 10726 37 100.0 33 ..................................... ATAGTTTTTATGATATTATGGAAAAAATCCCAA 10656 37 100.0 59 ..................................... ATTGAGGATTTAAATATTGAGGATTGAAACGAATTACAATAAATCAAATCAAGCAGATT 10560 37 91.9 0 .............A.....A............C.... | ========== ====== ====== ====== ===================================== =========================================================== ================== 57 37 99.9 36 GTGACAATTACTATTTAAGGTAATTGAGGATTGAAAC # Left flank : GTGTGACTGAACGTGATTTAGAATTGTTTTGGGAAGCTTTAATTAAGGCTTGGGAGTTTGACCGCTCTTCTGCACGGGGTTTTATGGCTTGTCGTGGATTATATGTATTTAGTCATGCCAGTAAATATGGTAATGCTCCTGTACATAAGTTGTTTGATAAGCTGCAAATTAAGTCTAATGTTGATGTACCCCGTAGTTTTGCTGATTATCAGGTGGTGCTTGATGATGAATTTAAACTACCTGATGGTGTGATTTTGACAAGGTTGGATTAAAAATGCGCGGATGGTTAGGTGTTAAGTCGGAATGAGTATGATTAAGCTGGAAACTCTTGCAATGTATGGATTTCAGGACATGGGTAATTTAAAATGCCCGCGCACCTTATGCTGTAAGGGTTACAGCGTTTTTTGCTCTTGCTCTTGGGACTGGAATGGGGTATTATCTGAACACCCGCGCAAATCATTCTGGAAATCTCCTATTTCCAAGGGTTTCCCCGGCCCGCT # Right flank : AAAATCATGTTTTATCTAAATACCCCCGTCCCTGACAATGATCATACCCCACCAACTCGACGGGGAAAGCATAAAATATTCATTGGAATGGCTCCCGGAGTCGGGAAAACATACAGAATGCTAGAAGAAGCACACCAACTTAAACAAGAAGGTATTGATATTGTAATTGGTGTTTTAGAAACCCATGGACGTAAAGGTACGGCCACAAAAGCCATAGGATTAGAGATAATTCCTAAAAAAACCATTGTTCACAAAAATATCAACCTTCAAGAAATGGACACCGAAGGAATTTTAAAACGCTCCCCTCAACTGGTTTTAATTGATGAATTAGCCCATACAAATACCCCCGGTTCACTTAGAGAAAAACGCTATCAAGATGTAGAATTAATTTTAGCAGCCAGTATAGATGTTTACTCTACAGTCAACATTCAACATTTAGAAAGTTTGAACGATTTAGTAGCAGGAATTACAGGTATCGTAGTCCGAGAACGAATTCCAGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGACAATTACTATTTAAGGTAATTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 161740-155419 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTO010000004.1 Aphanizomenon flos-aquae FACHB-1287 contig4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 161739 37 94.6 41 ...................................TG TGGCTATTTGTGGGGTGAAAAACCCAATATTTCTGCACTAA 161661 37 94.6 37 ...................................TG TTCCTTATGCCTTCTGATTTTTCTTAACTAATGAAGA 161587 37 94.6 34 ...................................TA AAAATTCTCCGGATCTAGGTTCTCCAGATTCATA 161516 37 94.6 35 ...................................TT GGGATAACAGGCGCGGGTTATGCACCAGCCTGGGA 161444 37 94.6 39 ...................................TT TGATGTGATGTATTCCACCCCGCGGCATACATATCAAGA 161368 37 100.0 36 ..................................... TTCTGATACTTGCGGATTTGGTGAGGCGATCGCAAA 161295 37 100.0 38 ..................................... ATTAAACAAATAAAGTAAATCTAGATTAGATTTCAAGA 161220 37 100.0 36 ..................................... CCCTGAGTCGTAACCAGCGCCGAATTGGTTCGCCAA 161147 37 100.0 43 ..................................... TACTTTTACATTTCTATATTCGACTACGGTGTTGACGGTGGTA 161067 37 100.0 40 ..................................... AGCCATTTGTTGTTCTTCTATGGCATGAAGTTGATCAAGA 160990 37 100.0 40 ..................................... GGGTATGGCGGTGAACGATGCCAGGGAGAGCGATCGCACA 160913 37 100.0 35 ..................................... ATTCATGCTTATCAATCAGTGGGTAAAGTCGTAGA 160841 37 100.0 35 ..................................... AAAATGGGCGAAACTCGAGTGATAGGGGAAATGGA 160769 37 100.0 40 ..................................... CAATTAGGGTGGATCTTTTTTACCCAGTCCAAGGCGTTAA 160692 37 100.0 33 ..................................... CCTATCAATGAAATAATCGTCAATGCAGTCTTA 160622 37 100.0 37 ..................................... ATCCCCAGTCGGAAAAGCAAATTCTTTCCCACTGATA 160548 37 100.0 43 ..................................... TTCAATCAAGATGACCTAGAAAGTCCGCGGACTGAAAGGGGAA 160468 37 100.0 36 ..................................... AAAAAATCTCTCCTACCAGAGCCGCGATGACAGGTA 160395 37 100.0 40 ..................................... AACCCGCTTAATGGGCTGGTATGTGCAGATAAGATATATA 160318 37 100.0 35 ..................................... CTCCGAAGGATGGGTAACTTCTGCTACGCAAAGCA 160246 37 100.0 35 ..................................... CAAAAATATCTCGATCAACATGATCTTTTAATTCA 160174 37 100.0 38 ..................................... TTATGCTTCTGAATCTGAGGTCGCTCCTGACATAGAAA 160099 37 100.0 35 ..................................... GGCAAATTTAGTGCTGACAATTTCCAAGTGATCTA 160027 37 100.0 37 ..................................... CAGCATTGCCGATGCTAAATTCGTTTGGTTTAACGGA 159953 37 100.0 44 ..................................... CAATTATTTCGCCATCCTGAATCTTGATGTAATCACGGCGCAAA 159872 37 100.0 36 ..................................... TTCCCCATTTTACTCAAGAGAGATAGAGCATTTATA 159799 37 100.0 36 ..................................... TTCGGGTCTGTCCCCTACCATCAAAACTTCCTCTAA 159726 37 100.0 33 ..................................... GAATCAATGAAAATGGATATCAATGGACTAGAA 159656 37 100.0 37 ..................................... TTCTTCTTTGATGTGATTGAGTCAGGGGGTAAACTCA 159582 37 100.0 35 ..................................... AAATAAATAATTTCATCACCAACTAAGGCACAATA 159510 37 100.0 37 ..................................... TCCTTCGCAATCCCTACCTCTAGCAGTACAACACTAA 159436 37 100.0 37 ..................................... TGATAATTAATGATTCATCACACTGAAATCTTAAAGA 159362 37 100.0 36 ..................................... ATGATATAAATGTGAGGCAAGGGAGGAAAGCCCAAA 159289 37 100.0 43 ..................................... GAGTTGGGAGAAGGAACTAAAACCTCAGCGAGAGTAGTAGGAA 159209 37 100.0 36 ..................................... ATAGAGAGCTCTTGACTCTGGAGAGCCAAAGAACGA 159136 37 100.0 36 ..................................... AATGGTGAGTTCTGGACTGGTAAAAATTGGGGGAAA 159063 37 100.0 37 ..................................... GAAAATTGACGTAAAACTGGAGAGTAAAAGTAAAAAA 158989 37 100.0 38 ..................................... AGTAAACGGTTTTAAGTGGCTGCAACTAGACCGCGCAA 158914 37 100.0 38 ..................................... AAAAAGTAAAAAGTAAGTAAGGAAAGGCAAGGAAGATA 158839 37 100.0 39 ..................................... AGTGCTAAGGGGAAGGCTTTAAATTCCCAACTTTCCTCA 158763 37 100.0 36 ..................................... TAAAAGCTTTTGGCAAGAGAGGTTAAGAGCTTACGA 158690 37 100.0 35 ..................................... TAGCCGGGAGTTATAGAGGGATGGAAATTTACGCA 158618 37 100.0 36 ..................................... TACTAGACTATAAATATAGGGTAAAGCAAAGGAAAA 158545 37 100.0 36 ..................................... AGACGCTTTTTCCAGAACTTCTAATCGTGTTGTAAA 158472 37 100.0 38 ..................................... TTCTCAAGATTGTATCTTGTCGCGCTTGATATATTTAA 158397 37 100.0 41 ..................................... TTCAGTATTTCTGTTTCGATGTGGGCTAATTCCTTCTCAGA 158319 37 100.0 38 ..................................... GAATACTTCAATATCCCCTAACTCAGTTTCTATTGTTA 158244 37 100.0 35 ..................................... ACTGCCAAGGAACTTTTAATTAAAAAATTAGAAGA 158172 37 100.0 37 ..................................... ACTAAACTCATTATCGTATTGTGGAAAGCCTAAACTA 158098 37 100.0 36 ..................................... AAATGGGAATTAACTAAATCCAAAAAAATAGAAAGA 158025 37 100.0 37 ..................................... CCCTTGAAATAACCCAAAGCCTTAAATAACTTTTCTA 157951 37 100.0 40 ..................................... CCAAGAGCCGCCCCAGCAACACATTCCAGTAAAATCTCAA 157874 37 100.0 34 ..................................... AAGAATAAAGTGTCCTTATATTTTTACAAAAAAA 157803 37 100.0 34 ..................................... TACAATCTATTAATGATTTAAAATCCAATTTAGT 157732 37 100.0 39 ..................................... CAGGTATTGTAGAATCTATGCAAGCAGCTAAATGATTGA 157656 37 100.0 38 ..................................... TTTGTGGCTGCCAAGGCCGAAGAAAAAGACGGTGATAA 157581 37 100.0 36 ..................................... AGAGATAGTAGCCCGTAATTCATTGACGGGACAATT 157508 37 100.0 37 ..................................... AAAGAGATTGTTACTGATGTTCCCTCACCATCATAAG 157434 37 100.0 35 ..................................... TATGCCAACATATTCTGATATTTTCGATAACAACA 157362 37 100.0 38 ..................................... ATAGATAAAATTCTGTTAGTTGAGGAATAAGATGCAGA 157287 37 100.0 36 ..................................... TTCACATGGCAGAAGTTCCCGATCTAACAAAAGCCG 157214 37 100.0 37 ..................................... CAGTATTTTTTATAGACCCCAAGGATGATCCCAAAGA 157140 37 100.0 41 ..................................... ACTTCCCTGACATCTACATTTACACTTTAACAAGTTCACAG 157062 37 100.0 35 ..................................... CAATCAGCAAGCTCAAACTGATCTAAAACTAAAAA 156990 37 100.0 33 ..................................... TATTTAGTTGCCCAAGAAGTTTCAATAGCGGGG 156920 37 100.0 33 ..................................... TAATAATTTGTGAGGTAATCCCCACAAGATTTC 156850 37 100.0 38 ..................................... TTAGAAAATTACGACAATAACCCAGACTTACTGGAGAA 156775 37 100.0 33 ..................................... CCTGCTTTACCTCTAATTTTTCTAACTGCGCTT 156705 37 100.0 35 ..................................... TAAAATCCTTAAACTTAAGTTGCGATCGCAAGATA 156633 37 100.0 38 ..................................... TTAATTACTTAAAGTAGCTTAAAAACCTTTCAACACTT 156558 37 100.0 36 ..................................... ATCGGGAAAGCTTACCGACTCAAACCCCATATTAAA 156485 37 100.0 35 ..................................... GTACAAGTCCCGTTACCATTAGGCTTATCATAATT 156413 37 100.0 40 ..................................... CGTGGATATGGTGATTTGAGAAAAGTTGCCACTTGGAAAA 156336 37 100.0 34 ..................................... ACTCCTGTCCAGCAGCAGAGTTTTTTCAGCTCTG 156265 37 100.0 34 ..................................... ACTATTAAGTTAGTCAGCAAAAATGACAAGTTTA 156194 37 100.0 39 ..................................... TGAATATCAACAGTATTAAAGATGCGATCGCTCCAAATA 156118 37 97.3 37 ........................A............ TAGCCTGAATCACTTTAAATACCTGTTGAATAAAGTC 156044 37 100.0 40 ..................................... CGTGGATATGGTGATTTGAGAAAAGTTGCCACTTGGAAAA 155967 37 100.0 37 ..................................... TACCTATTGGAGATTGTAGAAATTTTTGGGAGTGGGT 155893 37 100.0 36 ..................................... AATTTGATTACGTTTTAGCACGTTGTAAATATTTGC 155820 37 100.0 41 ..................................... TCACAAAAAGTATTCTGAACATCCGCCACAAATAAAGGCAC 155742 37 100.0 37 ..................................... GAAGCGGCTATGAATTTGTTAATGGGTGAAGGTTATG 155668 37 100.0 34 ..................................... AATTCAGTAATTCATCAAGATTTTTACTCATGTT 155597 37 100.0 34 ..................................... AGCGCAAATAATCTGACCTGACAACGGATAACTT 155526 37 100.0 34 ..................................... ATTTTTATGAAACTACACCTGGCCACCAAAATGA 155455 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 86 37 99.7 37 ATTGCAATTTCTCTTACTCCCTATTAGGGATTGAAAC # Left flank : TGAATGTTGTTGTTTCTTACGATATTTCTGAGGACAAACGCCGGACGAAAATCCATAGTATTCTCAAGTCCTATGGTCAATGGGTGCAGTATAGTATTTTTGAATGTGAGTTAACTGATACTCAATATGCTAAACTAAGATCGCGTCTTAATAAGCTGATTAAACCGGAAACTGACAGTGTTCGCTTTTATTTCCTTTGTGCTTGCTGTTTTGGTAAGATAGAAAGGGTCGGCGGTGAACAACCCCGTGATCAGACGATTTTCTTTGCTTGATGCGCGGATGGGTGGGTGTAAAATATCTAGGTCTGGAAAAAATGTCTGAAATCATCTCTGTACAAGACTTTGAGCAATTTATGGCGGTTCACCCACCCGCGCCCTTTGCCCAGTATGGGTTTCACGGATTTTACCCCTTGACACTTTTTCGGAAATGGTTTATTATGAGTTCATCCGCGCAACTGAACCTTGAAAACTACATATATATAGGCTTTCGAGTCCCCGCCA # Right flank : AAAATTAATTTTTACCCAGATAGATTAAACCCTGTGCTATTAAGTCTCCTAAATTAGTTAGCTTTTATTGTAGTTTTAGTTGCTATATATGTCGCTAAATCTGCTCAAAAATCTGAATCGCAAAAATAATTGCCTAATTGCCAAATCCAGATGAAATATTAATAAATTGCCAAGAACCTTATGTAGTCTTAAAATTCCTTTAGGGACAGAAAAGAAGTCTTGGGAGATTTTACCTTTTATTACTTATCTTCCTGCATACTCCTGACAATTTTTGTGACCATTTTTCTAGGAATAAACCGCACACATTTTGACATAATCTTATTCATAAACCCAGGAATAACAATTATTTTTCCCTGAATTAGGGCATTATAACCAATTTGGGCAACAGTTTCGGCATCCATCATATTTTTACCTTTCAGCATTTTAGAATCAGCCATTCCTGTTCTTTCATGAAATGCTGATGCTGTAGAACCTGGACAAAGAACTGTGACGGTGACACC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCTCTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA // Array 1 2935-1691 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTO010000013.1 Aphanizomenon flos-aquae FACHB-1287 contig13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 2934 36 100.0 38 .................................... CAGCTATCAGCCGCTCGGCTACCTCTCCATTAATCTGA 2860 36 100.0 37 .................................... ATACCTTGCTCAAAGGCACGACCATCAGCATAGTTGT 2787 36 100.0 41 .................................... TTGGTAAGCACTAAATGACATACTCAACGGGTTACGATTAC 2710 36 100.0 41 .................................... TTCCCAATCTATGCCTAATTCCATTAAGCATTTGAATTTAA 2633 36 100.0 40 .................................... GATTTAATACTAGATGAATTAATCAACCAATCAATGATAC 2557 36 100.0 37 .................................... GTTACAGGAAGTAATGGTACTAACTTAGGGGGGTTAG 2484 36 100.0 40 .................................... AAATGGGTTTTGTTGGCGGTAAGGTTTTAGAGCCTAGTTG 2408 36 100.0 42 .................................... CAACAGATAACTATCAGTGCCTCAACAGATAACTTTTATTTT 2330 36 100.0 42 .................................... TTTCGTTGACTTATCGGACAATAATTATCCGTCGCTATAACT 2252 36 100.0 34 .................................... TATACTCCAGGTATTCATGATCTTTAAGCATCCA 2182 36 100.0 40 .................................... TTGAGTGAAAAAAGATGTTAATTTTACCGTTAACTGCTTC 2106 36 100.0 36 .................................... ATAACTAATGTTCTATCAAACGTATATTCAATTAAA 2034 36 100.0 42 .................................... TCTAACAGGAACTAAATCAAGGACGTATTTCCTACCACCCAA 1956 36 100.0 41 .................................... GTATATCCGCCGAAACTATAACGGGGTTAAGTTCTAATACC 1879 36 100.0 46 .................................... GATCTAATGTATTTCATGGTTGTCCTCTAATAGAATAAGTAATTAG 1797 36 100.0 35 .................................... CTAAGAATAGACTGAATATTGTTTTCATGTTTACA 1726 36 97.2 0 ..............................A..... | ========== ====== ====== ====== ==================================== ============================================== ================== 17 36 99.8 40 GTCCCCACTCGCTGGGGACATTAATTGAATGGAAAC # Left flank : TAAAGAGATTGGTAGGGTTGTAACTTTGGAGGAGGGTTGTTTAATGGGTGGTTTTGGTTCTGCTGTGGCGGAAGCTTTACTTGATGCTGATATTGTTGTACCTGTGAAGCGGATTGGTGTTCCTGATATTTTGGTAGATCATGCTACACCGGATCAATCTTTTGCTGCATTAGGTTTAAGTAGTCCTCAAATTGCCGAAACTGTTTTACAGGCTTTCTTTAGAAAACAGGTTGCTGCTATGGTGTAGTTTTTGTCTGAATGAGGATTTGCAGCGATACAGGATTTAATTATTTTGTATATGTTTGCTGGTCTTGTTTATTTTCCGAAGTTCAGGTAAAATGGCTGTAATATTGATTTTTTCGTTGGGAACTTCGGTCGCTTGCTGGGTAAGGGTTTTGGGAGTTTTTTTCTTGCTGTCGGTTGGTGGTTTTACTACTTTTTTCCTGACCCTCGGAAACTGTCTCTGGACACCTTGCTGGGTAAGGGTTTAAAATTGAGGG # Right flank : AAAAGCACAGATAGTATATTTCCCTGGTCTAATCAAGTACATACCAACTTGTTTCCTGTTCCCTAAAACTAAAAAACCTTATACCTCAAGAACATGAACCAAAAAACCCTTAAAAATCAACAAACCCACAATACCTAGCCACCAAACCAGCTAAAACTTGCAAATCTATCGGTTTAGAAATATACTCATTAACACCAGCAGCCAAACAAATTTCTCGATCTTCCTTCATCGCCCTTGCAGTTTGAGCAATAATCCCTATATGCTGATATTTAGGGTTTTCTCGTAATTGCTGCACCAAAATTAAACCATTAATATCAGGTAAACTCACATCCATTAAAATCACTCTTGGTTCTATTTCCCGCAGACTATTCCACATTTCCACCCCATTTTTTACCCAAATTACCTGATACCCCAATCTTCTTAAATAAATCCCCATTAATTCCCCATTTGCTAAGTCATCTTCCACTAGTAAAACTACTGGTGATAAAGTCATATTATAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCCACTCGCTGGGGACATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //