Array 1 25944-26363 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARTU010000010.1 Listeria seeligeri strain FSL L7-1134 NODE_10_length_115691_cov_46.964416, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 25944 29 100.0 36 ............................. TTAGAGGAGAGTTACATAACTGGTAAAGAAATTGGA 26009 29 100.0 36 ............................. TTTTTTATTGGTATTTTGCTAGTTTCGCCGCAAAAG 26074 29 100.0 36 ............................. AAATAATTCGCGCTAATGGATAGGTTTTTTGCAATC 26139 29 100.0 36 ............................. TTTTTTCTTATCTTCCGTCCATTTTTTGCCCGTCAA 26204 29 100.0 36 ............................. CCGGGATTGTTTCTAGAAATAACCGCATTAGAAGTT 26269 29 100.0 37 ............................. GATGCTGCAGCGTATATAATTTAATTGAGCTAATTTT 26335 29 93.1 0 ..........T.C................ | ========== ====== ====== ====== ============================= ===================================== ================== 7 29 99.0 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : GCGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTTATTGCCTGCGCAACCCACTCGGTTATGGCCGGAAACGCAACCGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCCGACTCCATTGACCTACCAGAAGATAAACAATTTGATAAATTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAATTGGGTCTCTGCTTTTTTGTACGTTAACTTCTGTCGACCGTTAGTAGTGCAGAAAACAAGAGGGATTGACAGAACATTGGATTCCTTTGTGGGAGAATAGGTTTGGTGGGTTTTTAGTTATGAAATTAAAGTTCGGTGCTTTGATTTTAAGAGGTTTTTTGGAGATCGACAAAAATAGGCGCTTGAGGTAAGATGGGAGTAAGAGGAAAAGTGAACGA # Right flank : TGTCTCCCAGTCCACTTACTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAATCATCCAAAAAACACCAAAGCGGAGGAAACACTCATGAAAAAAGCATTTATCCCGCTTCTATTTTTACTATTCCTACTAGCTAGTTGCTCCGCGCCCAATGAAAAATTAACAAAAAACACCAAGATTTTTAAAGAAGGCGTTATTAATGCGGATTATCAGATTCCACAAAACCTAGCAGAGCTTGAATCTAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAAATGGCAAAAATAACAGCACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCGAATCAGGTGAGAAAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGGGAGTACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTCAAGAGTATCTCTTGTTTTTAAGCGGAGGACATGACGGGGATAGAGTAAGTTCTAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 32584-35206 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARTU010000010.1 Listeria seeligeri strain FSL L7-1134 NODE_10_length_115691_cov_46.964416, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 32584 29 100.0 34 ............................. CCAATTAGTTTACTCATAGCGCCGAATGCTTGCG 32647 29 100.0 35 ............................. GCAGTTATTACGGTGGCTGGTGCGGCTTTGCTTGG 32711 29 100.0 35 ............................. ACACTTACACACCACACCAAAGTTAAATGCCGTAG 32775 29 100.0 36 ............................. CTCAATAAGCTCTCTTTCTGTGAAGGTCACTTGGTG 32840 29 100.0 36 ............................. TGTAATTACACCTCCCCAGGATTGTAGATACCTACG 32905 29 100.0 34 ............................. TTGCTTTCAGAGGTGAGAAAAAACATGCAATCAA 32968 29 100.0 37 ............................. GTGGTCAACTTAAATGATGGGACACCAGTTAAATTTC 33034 29 100.0 36 ............................. GATAATTCTTGATCTAGCTCGTCCATTCTTGATTGG 33099 29 100.0 38 ............................. GCACAGATTAGACAGATTACCAATGCCAAAGTACAAGG 33166 29 100.0 35 ............................. TTGTTCATCTACAGCATAAACTAGGCGACAAGAAA 33230 29 100.0 37 ............................. CCGCTTTGTGGTAATAGCTCTTGACATTTTCAAATAC 33296 29 100.0 36 ............................. ATATGTATCTTGCGAAAAAACACGTAGATGCATTAC 33361 29 100.0 36 ............................. CGGATTAATCAATTTGGCAATCGGTGAAAACAAAAT 33426 29 100.0 35 ............................. TGCTTTTCGCGATAGTTTTCTACCGCTTCAACTAA 33490 29 100.0 35 ............................. CGCATTAGCGCGGTGTACTTTGAAGTCTAGTTATA 33554 29 100.0 36 ............................. TTTTACACATCGAGAGATGACAGGTACATCATGTTC 33619 29 100.0 35 ............................. ATTTTGCTTCTAGTGCGTCGAAACGTGACTTAACA 33683 29 100.0 37 ............................. AATCCACCGACTTTTTCACCAGCATTATTTTTGTTCA 33749 29 100.0 36 ............................. CTGGAAGAGGCGTGGCTAAAGATAGCTGAAATGAAG 33814 29 100.0 34 ............................. AAACCTCGAAACGAGAAAAATCGGCAACTTTGGC 33877 29 100.0 34 ............................. CTTGTTTTTCTTGGGGCATCTTTCTACTCCTTTC 33940 29 100.0 37 ............................. TTACCTCAAAGTGGCAGATGGTTTTATGGGGTATATC 34006 29 100.0 36 ............................. ACGAATTATTGGACGGCTGGCTGACCGTGATATGAC 34071 29 100.0 37 ............................. ATATGTATTCAACTATTATTCAGCAAAAGACTTGACA 34137 29 100.0 35 ............................. CAAGGTCACCAAAGTTCCATTTCGATAGGTCGGTA 34201 29 100.0 42 ............................. TGGTTACTGTCAGTAATTGAACCTGTTTAGTATCGACGACGT 34272 29 100.0 36 ............................. TCGTCCCAGCAATCATCAACAATTAGCGGATTTTCA 34337 29 100.0 33 ............................. AAGCTTAAATCTGAAACATTCCAAGAACCATCA 34399 29 100.0 36 ............................. ACACTATCTACGTGGTGTATTTCACCTCTGCGACCT 34464 29 100.0 37 ............................. AGACCAGACCAGTTCATCACAAACAGTCCGGTCGTCC 34530 29 100.0 35 ............................. TTCAATCACCTTCTTTCTTGTGTATCGACTTTATT 34594 29 100.0 36 ............................. CTAAATACGCCAGAAATGACCTGCCAGATGCCTTTT 34659 29 100.0 35 ............................. CTATGATATCTTCAAGGGCATATCTACATGTATCA 34723 29 100.0 35 ............................. ATTAGTTGTACTTCATTCATTTTCATGATAATTCC 34787 29 100.0 36 ............................. ACTAATCAGCCCTATAATGATATCCCGACGACTATC 34852 29 100.0 36 ............................. TGACATCACCCGTTAAACCCACCACAACATGTCCCC 34917 29 100.0 37 ............................. AAGTTTTTCCGGTTTTCAGCAACGATGACTACGAAGA 34983 29 100.0 38 ............................. AACTTTTTCTGCTGCCTCATTTGTCATTTTGCACCTTC 35050 29 100.0 35 ............................. ACGACTAAATACGAATCAGCTAGGCATCAAATGAA 35114 29 100.0 34 ............................. AATATTTTATTCGCTTGAATAGAGTAGGGTTCTC 35177 29 86.2 0 ........C....C..A...........G | T [35203] ========== ====== ====== ====== ============================= ========================================== ================== 41 29 99.7 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : AAAAAGTCACCGTTCCATCTTTTTTCTCTTTTGTCTCTGCTTTGCTCGTCGTTGAATCATTCCCACAGCCCGCAATCAGTAGTAAAGTACAAAACACCACCATCAACTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATATAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATGATTTTAGCACAGATGGTAAGCGTTTACAAGTTTGCGTATTTTCTGTCGATGTGTGGTAGCGTGGAAAGTACTGGAGACCGACAGATTTGTGGGATGCGTTGGGAGAGAATGAGAGTGGGGGGATTTGGGTTTTGAATAGTAATTTTAGGAAGTTAAAAAGCCAATTTTGAGATAGGTCGACAAAAATAGCCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : GCCTTTCAATCATGCTAGTAAAGCTGCAGAAATAATTATTTCGAATTATAAATTCATCCAGCAACAAAAACATAGCTAGTAGCACTATCATAAATTTTCCAGTCAAAAAAATTAAAATCAAATTCTTTACTAGTTTTAAGGTATAAATCTTTTTAACAAAAAGTGAAAAATTTCAATAAATTATATAGCAAATGTTAAACAAAACACTAGTATTTTCAGTGTTTTTTTTTCGCTAGCATTCACTCTTTTTTTATGTTAAATTAAACACAAACAACAGAGGGGGTGACAAAAATGAGACTAAAAATAAATTGTGATTTCGACTCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTCAGTTTATTCAAAACTGGAATTGAGAAATCTAGTCCCGAAAGATATGAAGATTTATTCGGGGGTAATAAGCGGAAAAATTACACCTTTTCGATATACTTGCCTAAACCTAAAAATAATAAAAATGAAATTTATCTTGAAGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 43805-45514 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARTU010000010.1 Listeria seeligeri strain FSL L7-1134 NODE_10_length_115691_cov_46.964416, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 43805 29 100.0 35 ............................. TGTCTACCAACTCCAAGAAAGTACACCCGTCTTCC 43869 29 100.0 36 ............................. GAAATTAAGACAACAATAGCAGTAGAAGTTATATCT 43934 29 100.0 36 ............................. AAAACAGAGCCTCCGCCGTCCCAGCCGGTAAGAAGA 43999 29 100.0 37 ............................. TTAATAAACCTAACAGTAAAAATAGCGGTTGAAAAAC 44065 29 100.0 34 ............................. TTGCTTTCGGCAGGTACAAAAGCACTATCGAACG 44128 29 100.0 35 ............................. ACTAAAATTGGTGCGACAATTAATGAGAAAATCGC 44192 29 100.0 38 ............................. AGAAAAGATATTTTATGTATTGATGTGAAGTCCTTTTT 44259 29 100.0 36 ............................. TGCTCTCTCAAGTCGTCAGCAACCATCACGATGTCA 44324 29 100.0 35 ............................. TAACCACCTTGTTCAGCATAACGCCCCTGATGATA 44388 29 100.0 34 ............................. TTTGTTTGGGGGCGGAGCGGCTCTTATTCGCTTG 44451 29 100.0 36 ............................. ATCATTGCGCGTCCGAAAGGGCTAGAAGTGTCAAGC 44516 29 100.0 36 ............................. ATATGCACCACTGTCGTATTGACGTGATGTTTTCTT 44581 29 100.0 35 ............................. TTATTCCCGTTATTTGATGCCGCGGCACAATATTC 44645 29 100.0 35 ............................. CAACTAATCGAAGCGGCTATAACGATTGTCATGGC 44709 29 100.0 36 ............................. GTTATTGAAAAGAATATGCAAATATATATAAATAAT 44774 29 100.0 35 ............................. TTTTCACTTGCATATTTTGATAAGATGTTTTCTTC 44838 29 96.6 34 .......C..................... ACCATCCCGTCTGCTGTAAAATATATTCAAGCGC 44901 29 96.6 37 .......C..................... CATGGTATATTTATCATATACTGCCTTAGGTTTTAAT 44967 29 96.6 35 .......C..................... CTCCGTATACTTTCAAATAGAATTTACTAAGTTGA 45031 29 96.6 36 .......C..................... AAAAACACGCGCGATCTGACACCGCTTTGCAACTTC 45096 29 96.6 37 .......C..................... AATTTTTCGATGGTGTCTAAGCCGTCGACCACAATAC 45162 29 96.6 35 .......C..................... AATATGCACCAAATGAGCTATTGCAAATCATGGAT 45226 29 100.0 36 ............................. ACCGGTATTTTCATAGATTTAAGTTTCGCTGGATCA 45291 29 96.6 36 .......C..................... AAAAAAGAAATGCGCAAATGGTTTATGCACGTTATC 45356 29 96.6 36 .......G..................... TCAGGAGTGGTAATGTCTTCTGTTGCTACCACATCA 45421 29 82.8 36 ..A....C....C........TC...... GTGGTCAAAGCCTTCTTATTGCCAGCAGGTGAGCCC 45486 29 75.9 0 .......C.......CA.....CA...CC | ========== ====== ====== ====== ============================= ====================================== ================== 27 29 97.5 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CTTCAAGATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCTGTGGAAAACGGTGGGGCAAAGGTATGGCGCAATGTGTTTAAGATTTGTAAGCGATATTTAACACATGTCCAAAAGTCTGTATTTGAAGGTGAAATAACGCCTGCTCTTTTAGCGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGTAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGGCTGATGAAAAAACGTCGAATTTTTTCTGAATAAATATTTCTGTCGACCTCCAGTAGTGCAAAAAACACTGGAGGTCGACAGAAACGTGGGAAGCCTTGGGGGAGAATGGTTTTTGGTGGATTTTCTTGTTTGAGGTGAGAAAATAAAATAGGTTTTACCTGCTTTTTACAGCGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGAATTTGGCGG # Right flank : CCCACCCACCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTTATTCAAAAAACCACACCCCCAACCTCCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGGGTGAAGCTCTATAACTATAATGAACGTAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGAAGAAATAGAAAACGGAAAAATGGGAATATTTAATTATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTATTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACGGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGAGGCGTTGGGTTTAAAACAGTGGGGTACACAGATGTGACTTCATATGAGACAGCGGTGCAACAGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //