Array 1 15633-16987 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLOE010000001.1 Lactobacillus johnsonii strain N16 No16_ctg001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 15633 36 100.0 30 .................................... GAACCTGTATATGCTGGTACAATATCAACT 15699 36 100.0 30 .................................... GTGTTAATGTTTCTGGAGATATATCAATAT 15765 36 100.0 30 .................................... TTTTCAGAAAAATCTACTCCTGTTTCTTGT 15831 36 100.0 30 .................................... GAGCTGTATAACTATCTATTAAGGATTGCG 15897 36 100.0 30 .................................... ACTGAAACTAAAGATGATAGTGAAGTGCTA 15963 36 100.0 30 .................................... ATGCTACACGTTCACGCATTGAATAATTGT 16029 36 100.0 30 .................................... CCTAATGTTCCGAGCCAATTTATGGAGCAG 16095 36 100.0 30 .................................... AACTTTAAAAGCAATGTCATACCCGTTTAA 16161 36 100.0 30 .................................... TGGAATAGTGAGACAGGTGCTCCAAGATGA 16227 36 100.0 30 .................................... GTAAATTCAAATTTCATAGTTCTCCTACTA 16293 36 97.2 30 ..........................T......... TAACATGCTCGCTGCTATCAACTACGCCAA 16359 36 100.0 30 .................................... AGGACAACAGAAAATGGAGCTTTGAATATG 16425 36 100.0 30 .................................... TGCTATTAATTGATGGGGTCGACAATATTA 16491 36 100.0 30 .................................... GTTCAAGCTTTCAGTTCTTCTGTTAGCGCC 16557 36 100.0 30 .................................... CTGGTAAACATAAATATTTGATGCCATTAA 16623 36 100.0 30 .................................... AAATTATTGAAATTTGAAAGTCAAAATAGA 16689 36 100.0 30 .................................... TTATGTGAAGCAACCGATATCCTCTCTCAG 16755 36 100.0 30 .................................... GAAATAGACAGAGAAATGAACTAGGACAAC 16821 36 100.0 30 .................................... ATTTCAACAAGAAAGATAATGAATACACTA 16887 36 100.0 30 .................................... AGCTTTGGTACGTTTCAAAATCTCATCTTT 16953 35 80.6 0 .......................-..TA....CTCT | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 98.9 30 GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC # Left flank : CTAAAAATATTTTAGATAAATATATGCTTCTGATTATAAAAAAATATATCGAAAATTTAGATGAAGATAATCGAAATAAGATAGTAAAAGCATATTATAATTTAGAATCTTTAGTTCAGGATTCATTATTTTTAGAAGATTTACCGCTAGAACTTGATTTTAGTGAGGATCTAAAGAAGTTTCTAAAATTAGAGAATTTGCATTTAGATTCTAAGTTTTTAAAAGAGCCCTATGCTATAATTGAATCGATCTTAAGAATCCATCAAACATGTAATTTGAAGACTGTGCCAGTTGTTTGTAATGTCGCTCATTATTTAGATAGTACACAGTTAAACATGTTGAACAATTTGCTAAAGTCAATGAAATTGAAAATGATTTTAATAGAATTCACATCTAATGATATTCTGGTTTATCCCAAAGATGCTGATTACTTCTACATTGATCAGGACCTTGTTGATTGGTACTGACAGCTATTATTAAAAGATAATTATAAATTGTCG # Right flank : TTTATAAAAATCATTAGTATTAATTAAAAAGATTGATATTAATGGCTTTTTGTTTTGTTGAATTTGGGGATCTTATCTAAATTACCATTTTCTTTTGCTTCTAAGTAATTAAAATATTCTTCAGAGAACTTACCGCCTGTTAGCCAAACCATGTTATCGTTCCTTTTGGTTTTATTTTTTGTCAAAATACACACCTTTAATAATTTAAATATTATTAATTAAAATCTCTAGTTTTAAAAGGACAATAGAACAGAAAAAATGAGAAATCTAAGATTTAAAAAGGCTGATTTTCTATTCATTAGAACAACATATCCTAGTTTATTTATTAAATTTAAGAATAGTTATGAAGAAAATGGAATTGTTAATGTCCCTATGCAAAATGAAAGGGATTATGATTATTACTTTGATGTAGTTGGGGATTATATAGCTACCTCATTGAATGAAACGGGGGAGTTAAATGAGGACGGTCTAAGACTTGAGGCTGCGTGGGATTATGCAGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //