Array 1 20231-17042 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNGY01000023.1 Streptococcus equi subsp. zooepidemicus strain ISU9714 contig023, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ========================================== ================== 20230 26 100.0 39 .......................... CCCATAACTCTAGACAACCAATCCCCTTCATTGGTCTCG 20165 26 100.0 39 .......................... TTATGAATAAAGTTACGTCACTTATGAAGTAAGGTCTCG 20100 26 100.0 41 .......................... TTTAAAATTTTAAAAACCAAAGACAGAAATAAGAGGTCTCG 20033 26 100.0 41 .......................... GCAAGTACGGAGCTGGCAATATCATTATCTATGTCGTCTCG 19966 26 100.0 39 .......................... TTTATAATTTTCACCTAGATCTTCAACTTTTACGTCTCG 19901 26 100.0 41 .......................... CGCATAATCAATAGCAAATGCTGATTTTAGAGAATGTCTCG 19834 26 100.0 39 .......................... TTTGTCAGGGTACTCTGCATAAAGTAGTGCAAAGTCTCG 19769 26 100.0 42 .......................... TTCGTTTAACAAATCTAAATCCCAAGTTGCAATCTCGTCTCG 19701 26 100.0 42 .......................... ATCTTTTTTGATGCCATAGATAAAGGCTGGGATAACGTCTCG 19633 26 100.0 39 .......................... TTAAGATTGGTCACTTGTTCAAACAAGCGTTCTGTCTCG 19568 26 100.0 40 .......................... TCGATTTTGGACGACACTGTAATCGCCTAGCGTAGTCTCG 19502 26 100.0 40 .......................... TTGTGTTTATATGTATCATAAACATAAAATATTAGTCTCG 19436 26 100.0 39 .......................... AGTTTTTGATAATCATCCAGACCATAAAAATAAGTCTCG 19371 26 100.0 40 .......................... TTAGATAACCAGACACTCTTAAAGTGGGGATTTAGTCTCG 19305 26 100.0 41 .......................... CTGTTGTCGGATTAAGTATCAACACTTCCTCATCTGTCTCG 19238 26 100.0 39 .......................... TAGCGAATTTGGTGCAGATGCTTTTGTGGTTGTGTCTCG 19173 26 100.0 40 .......................... AATCATGGTGACTCCTTGCATGGCGGCCATAAAGGTCTCG 19107 26 100.0 40 .......................... CTTGTAAAAATGATTTTTCTTGCTCTGATATTTTGTCTCG 19041 26 100.0 41 .......................... AAGCCTCAAAGCTATTTGCTTATCGTTAGGATTCGGTCTCG 18974 26 100.0 39 .......................... GTATGCGTTGTAAGGATTGCGGTTGTAGCTGCCGTCTCG 18909 26 100.0 39 .......................... ACAACCATGTCCGTAAATTCAATTTGCTTATTTGTCTCG 18844 26 100.0 40 .......................... AAAATCATCGATGTAATCTTGGACATATCCAATCGTCTCG 18778 26 100.0 40 .......................... TACCACAAGACGGAATGGAGAAAGCTTAGACAAGGTCTCG 18712 26 100.0 39 .......................... TTCGTAGTTAGTGTTAGCAGTAACTGGGATTCCGTCTCG 18647 26 100.0 39 .......................... ATTTAGCAATCCTCCGTTATTTGCCTAACTTAAGTCTCG 18582 26 100.0 39 .......................... ACAACCATGTCCGTAAATTCAATTTGCTTATTTGTCTCG 18517 26 100.0 39 .......................... TTGGTGGTGTTGGTATTGACAGTGATCGAGATTGTCTCG 18452 26 100.0 41 .......................... AGGAACAACCACCACCACAACAACGCAAAAACCGTGTCTCG 18385 26 100.0 41 .......................... AGGAACAACCACCACCACAACAACGCAAAAACCGTGTCTCG 18318 26 100.0 40 .......................... CTGAAGCAATAGCTAACAATCCCGCTTTACAATTGTCTCG 18252 26 100.0 40 .......................... TTTAAGACTGTTGATAATATTTTGCTTACGCTCCGTCTCG 18186 26 100.0 40 .......................... AAAATCATCGATGTAATCTTGGACATATCCAATCGTCTCG 18120 26 100.0 40 .......................... TAATTCGTAGTTAAAAGGGCGTCTAATGATGTCTGTCTCG 18054 26 100.0 40 .......................... ATCACAAACAAAAAAATATGGCTCTAAACCATAGGTCTCG 17988 26 100.0 40 .......................... TAATGGTGAAACATTGATGTATAACAACCATGATGTCTCG 17922 26 100.0 40 .......................... CAATCGTTATTGGCACAGGGGAGATTTTACTATCGTCTCG 17856 26 100.0 39 .......................... AGCATAGATTGTTTTAACAATAATAGCCTCTGCGTCTCG 17791 26 100.0 39 .......................... AAAAACAACAGGAGATGCAATTGCTTTAATGTTGTCTCG 17726 26 100.0 39 .......................... CAGTATGTCGACATACTCCGACATCACACGTCTGTCTCG 17661 26 100.0 41 .......................... AGTCAACTCAAGCTCCACTAAGTCAATCAATGCATGTCTCG 17594 26 100.0 40 .......................... TATTCGTTTAGCTTCATCTTTGCGTTGATTTTCCGTCTCG 17528 26 76.9 40 ..TTTC.T.......C.......... TTTGGCATATCCGAGGTCCTTTATAGCATTTGCTGTCTCG 17462 26 76.9 40 ..TTTC.T.......C.......... CCTCAGAGGGAGCTCGAGAGCTGATAGCATAGGGGTCTCG 17396 26 73.1 39 ..TTTC.T...T...C.......... GAAGTTGAAATTGTCGAAAGGTACTTGAATCTCGTCTCG 17331 26 76.9 41 ..TTTC.T.......C.......... GATTGCTTTTGGAGTAAAACCGATCGGCTTAGCTTGTCTCG 17264 26 80.8 41 ..TTTC.T.................. GTTTGAATCAGAAACACGTGATACAAAGCTTGGACGTCTCG 17197 26 80.8 40 ...TTC.T.......C.......... ATCCGATAGGTGATTTTACGGTGCTGACTCTCCAGTCTCG 17131 26 100.0 37 .......................... GCGATACGTGACTTTACGATGTTGCGACTCCGTCTCG T [17107] 17067 26 61.5 0 ...TT.GT...T.C....T.C.T.T. | ========== ====== ====== ====== ========================== ========================================== ================== 49 26 96.5 40 CCCCATACGGGCGAGTGGATTGAAAT # Left flank : TATTCGAGGGGATATTGATAGCTACCCACCTTTTATGATTTAGGAGATTACTGATGATGGTATTGGTTACCTATGATGTGAATACAGAAACAGCATCAGGGCGAAAACGGCTACGTCAGGTAGCAAAATTGTGTGTTGATTATGGCCAGCGCGTGCAGCATTCGGTCTTCGAATGCTCGGTAACACCTGCTGAATTTGTTGAGATCAAGCATAAGCTGACGACGATTATTGATACGGAAGTGGATAGTATTCGTTTTTACTTGTTAGGAAAGCACTGGCAAAATCGTGTCGAGACGCTAGGGCGTTCTGATAGCTATGATCCTGATATAGGTGTCCTACTTCTGTAAAAGGAGTGAGTGCGAGCCTGAGTCACTCATAAAATGCTAGGAGACTCGCGCTAAAATAAGCTAAAAAATAAAGAAATGGGAGGTTATAGCTAAATATGTTATTAGCTAGCCTGTGTCATTTCTCTATAAACTGTGCTATACTGCGCAGTCTCG # Right flank : CTTTGTTTTTCATGAAGGGGTAAATCATATTGTATTCATCAAGCTGATTTATGCTTTTTATGGTGCTATGTCAAATAGATAAAAACCAATCTGAGGTTGTTGAACAGGATTGGTTTTTTCTTGTGATTGCAGATCAGACTTTTCAAAAGAACAAGCACATTATCTCAGCTAGACTGGTGCTTGATAGCTCCTGAGCCCTTGTTTGCTGTAGCTGATAGGACTTTGCTGATGGCCTAGTCAGGCATATCGTATCAAATTCAAGTTTTTTCATGTCACTGTCTATAGTTTGTCTGCCTTACTTTAGGTAGAATAGAGGTAACTTAAGAGAGGAGTTTATTATGGAATTAACGATGCTTTTGATGGTTTCAGTTTTCATTGCAGGGCTGTTATCATTCTTTTCCCCTTGTATCTTTCCAGTTCTGCCGGTGTATTTAGGCATTTTGTTAGATTCTGATGATTCTAGGTCTATTACTATTTTTGGCAAGAAACTATATTGGTAC # Questionable array : NO Score: 9.08 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCATACGGGCGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCCCATACGGGCGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [34-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //