Array 1 328475-327734 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYGO01000002.1 Listeria monocytogenes strain N12-0588 NODE_2_length_609818_cov_60.0264, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 328474 29 100.0 36 ............................. TCTTTAGTTGTTACTTGTTGGTTAATGAGATCTACC 328409 29 100.0 36 ............................. TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC 328344 29 100.0 35 ............................. GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA 328280 29 100.0 37 ............................. TTACCACCAAAGTCCCTACACTCAATACCACCAAAGC 328214 29 100.0 35 ............................. CGCTCTGACCTGTTCCTTGTGCAACACTCGTTACA 328150 29 100.0 34 ............................. TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA 328087 29 100.0 35 ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 328023 29 96.6 36 A............................ AAAATAGGAGGAAATAAATTATGACTATCAAATTAA 327958 29 100.0 35 ............................. TTTGTTGAATCAACGGATATAGATTTTACAATTTC 327894 29 96.6 37 ................A............ TTGGTTCCTTTGGAAAACAACAATAACGTGTAGTATT 327828 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAGCAGCAAAATAACCAAAAGTAATGACTTTC G [327804] 327762 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 12 29 95.7 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAGTGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTGGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG # Right flank : GAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATTT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 429677-431694 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYGO01000003.1 Listeria monocytogenes strain N12-0588 NODE_3_length_437109_cov_59.6788, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 429677 36 100.0 30 .................................... TCGTGATTTCTTCCTCATGCGCGCTTTTGA 429743 36 100.0 30 .................................... TTATCAGCAATTGAAACTATTAAAAATGAC 429809 36 100.0 30 .................................... CCTAGACCTAGATGCTACTAGAGTGGACGA 429875 36 100.0 30 .................................... TAATGCATCTTTATATTGATTTACCTCACC 429941 36 100.0 31 .................................... TGGAAATGAACGATTGTCGGCATTCACGAAT 430008 36 100.0 30 .................................... AGATATGGGCGAACTACCCGACGACAACAA 430074 36 100.0 30 .................................... GAAGAAGTCACTAGTTGGGTCAAGCAAGGC 430140 36 100.0 30 .................................... TAGTGCCAGTAAATTCAGTTCCTCCAAAGG 430206 36 100.0 30 .................................... TGTAAATGCGTTTAAATCGATGGGAAGCGC 430272 36 100.0 30 .................................... ACACGTGTGGAAGAAGAGGGCTCTGACGCT 430338 36 100.0 30 .................................... GTATGAAACGGTTAAATGGATCTCTATAGC 430404 36 100.0 30 .................................... TTTAATGATTTTCTTTTGCGCGCCGTTGGT 430470 36 100.0 30 .................................... GAATTTTTTTGTAAGATCGACAACTTTTTC 430536 36 100.0 30 .................................... TTGATAATGATAAGGCTGTACGGATTATTC 430602 36 100.0 30 .................................... TAACAGTGTATTTCTATTGCTCGGTGTGTT 430668 36 100.0 30 .................................... TGGAGATAACGAAGAGTAAAGCGAGGCAGC 430734 36 100.0 30 .................................... GCGTTGAACCAGAAGGTGGGAAAGAAACAC 430800 36 100.0 30 .................................... TGGTAATTTAGTATCTATTACGGCTGGGAA 430866 36 100.0 30 .................................... AGTTCATGCAGATGTTCCAACAGACTATGA 430932 36 100.0 30 .................................... AACAGCTCGGTTCACAGCCCAAACAGGCGA 430998 36 100.0 31 .................................... TAGCATCCCTTTGTTGAAAACATAGTCTGAA 431065 36 100.0 30 .................................... TTAAATTTCCCTTCTAACACTATCTATCAA 431131 36 100.0 30 .................................... ACGTGATGGTCCTTGGAAAAGGAGATTACT 431197 36 100.0 30 .................................... TAGTTATTTGCTTAGAAATGTCATCCATCA 431263 36 100.0 30 .................................... CTAGAAGCTTTGACATTAATATTACGCTTA 431329 36 100.0 30 .................................... AAATAATTTTTTTGATCATGTTGCAACAGC 431395 36 100.0 30 .................................... TGCAATATTGTCTGGATCTTTTTTCTTGTT 431461 36 100.0 30 .................................... AGTTAGATAGATAAACAAACTAAACAAAGG 431527 36 100.0 30 .................................... TAGTTTTTCTTCGTCCTCTAAACGCAAGCT 431593 36 100.0 30 .................................... TGTCTGAATGTAGTTGATATCTTTAACTTG 431659 36 72.2 0 .........A..CA.....C.....A.C.A..C.TA | ========== ====== ====== ====== ==================================== =============================== ================== 31 36 99.1 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : AGAGACAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAAACTATCTACATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAAGGACGGAGAAAAGTTTCCTCATCTCTATATATACTAGAGTGGCTTAGACTTCTTAAATCCGAATTTTGAAATGAATGTTGACCAAGATAAAGATATAAATAAATTGTTTCCCTATTCAATTCGTTTCAACTCAACTTGCAAATTTCAAGTTGCTACAAGCAAAGGGGATATACCGTTGAAAGTGGAGGAGCAAAATAATTGTTACGAGACCAAAAGTTTAAAAATTTTATATGATTATATTCTAAATGCGAGTAAAAATGGTGACACGCTTGAACTATATACTGTTTGGACAGCGAGAAAGATTTACCGTTAACGCACAAACCAGAACTGCTTTAACTATCGGAAATCTAGTTTTAAGTGACAGAGAGCTATTAATAATTAAAAGTGAGACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //