Array 1 93624-93290 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMSZ010000002.1 Escherichia coli strain 7E1-13 contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 93623 29 100.0 32 ............................. GGCGTCATCATCAAACAGGGCGTCTAACAGCG 93562 29 100.0 32 ............................. ACTATATATTTCCTCAACGAGTAATTTTGAAT 93501 29 100.0 32 ............................. GTTTACCGCCCCGCAGAGGCGCTGGCAGATCC 93440 29 100.0 32 ............................. GGATGACCTGTCGCTAAAACTCGCCGCGTACA 93379 29 100.0 32 ............................. TCCGTTTGGTCCACCAAATGTTTGATGCTTCA 93318 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 120878-119324 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMSZ010000002.1 Escherichia coli strain 7E1-13 contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 120877 29 100.0 32 ............................. GCTATCGCAGCAACACCCCAGCAGGAGCACAC 120816 29 96.6 32 ............................T CCCACTTCCCGCGCTCCATATCGATGATATAC 120755 29 100.0 32 ............................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 120694 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 120633 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 120572 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 120511 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 120450 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 120389 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 120328 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 120267 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 120206 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 120145 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 120084 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 120023 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 119962 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 119901 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 119840 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 119779 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 119718 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 119657 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 119596 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 119535 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 119474 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 119413 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 119352 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //